Mercurial > repos > dlalgroup > simtext_app

comparison simtext_app.xml @ 2:d7b190591e63 draft default tip

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"planemo upload for repository https://github.com/dlal-group/simtext commit fd3f5b7b0506fbc460f2a281f694cb57f1c90a3c-dirty"
author dlalgroup
date Thu, 24 Sep 2020 05:44:58 +0000
parents 34ed44f3f85c
children
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1:429b1df6b7a9 2:d7b190591e63
30 <param name="input" value="test_data" ftype="tabular"/> 30 <param name="input" value="test_data" ftype="tabular"/>
31 <param name="matrix" value="text_to_wordmatrix_output"/> 31 <param name="matrix" value="text_to_wordmatrix_output"/>
32 </test>--> 32 </test>-->
33 </tests> 33 </tests>
34 <help><![CDATA[ 34 <help><![CDATA[
35 The tool enables the exploration of data generated by ‘text_to_wordmatrix’ or ‘pmids_to_pubtator_matrix’ tools in a Shiny local instance. The following features can be generated: 1) word clouds for each initial search query, 2) dimension reduction and hierarchical clustering of binary matrices, and 3) tables with words and their frequency in the search queries.
35 36
36 The tool enables the exploration of data generated by ‘text_to_wordmatrix’ or ‘pmids_to_pubtator_matrix’ tools in a Shiny local instance. The following features can be generated: 1) word clouds for each initial search query, 2) dimension reduction and hierarchical clustering of binary matrices, and 3) tables with words and their frequency in the search queries. 37 Input 1, a table with:
37 38 - A column with initial search queries starting with "ID\_" (e.g., "ID_gene" if initial search queries were genes).
38 Input 1, a table with: 39 - Column(s) with grouping factor(s) to compare pre-existing categories of the initial search queries with the grouping based on text. The column names should start with "GROUPING\_". If the column name is "GROUPING_disorder", "disorder" will be shown as a grouping variable in the app.
39 - A column with initial search queries starting with "ID\_" (e.g., "ID_gene" if initial search queries were genes). 40 Input 2:
40 - Column(s) with grouping factor(s) to compare pre-existing categories of the initial search queries with the grouping based on text. The column names should start with "GROUPING\_". If the column name is "GROUPING_disorder", "disorder" will be shown as a grouping variable in the app. 41 The output of 'text_to_wordmatrix' or 'pmids_to_pubtator_matrix' tools, or a binary matrix.]]>
41 Input 2: 42 </help>
42 The output of 'text_to_wordmatrix' or 'pmids_to_pubtator_matrix' tools, or a binary matrix.
43
44
45 ]]></help>
46 <expand macro="citations"/> 43 <expand macro="citations"/>
47 </tool> 44 </tool>