Mercurial > repos > dlalgroup > simtext_app
changeset 2:d7b190591e63 draft default tip
"planemo upload for repository https://github.com/dlal-group/simtext commit fd3f5b7b0506fbc460f2a281f694cb57f1c90a3c-dirty"
| author | dlalgroup |
|---|---|
| date | Thu, 24 Sep 2020 05:44:58 +0000 |
| parents | 429b1df6b7a9 |
| children | |
| files | simtext_app.xml |
| diffstat | 1 files changed, 7 insertions(+), 10 deletions(-) [+] |
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--- a/simtext_app.xml Thu Sep 24 04:32:14 2020 +0000 +++ b/simtext_app.xml Thu Sep 24 05:44:58 2020 +0000 @@ -32,16 +32,13 @@ </test>--> </tests> <help><![CDATA[ - -The tool enables the exploration of data generated by ‘text_to_wordmatrix’ or ‘pmids_to_pubtator_matrix’ tools in a Shiny local instance. The following features can be generated: 1) word clouds for each initial search query, 2) dimension reduction and hierarchical clustering of binary matrices, and 3) tables with words and their frequency in the search queries. + The tool enables the exploration of data generated by ‘text_to_wordmatrix’ or ‘pmids_to_pubtator_matrix’ tools in a Shiny local instance. The following features can be generated: 1) word clouds for each initial search query, 2) dimension reduction and hierarchical clustering of binary matrices, and 3) tables with words and their frequency in the search queries. -Input 1, a table with: - - A column with initial search queries starting with "ID\_" (e.g., "ID_gene" if initial search queries were genes). - - Column(s) with grouping factor(s) to compare pre-existing categories of the initial search queries with the grouping based on text. The column names should start with "GROUPING\_". If the column name is "GROUPING_disorder", "disorder" will be shown as a grouping variable in the app. -Input 2: - The output of 'text_to_wordmatrix' or 'pmids_to_pubtator_matrix' tools, or a binary matrix. - - - ]]></help> + Input 1, a table with: + - A column with initial search queries starting with "ID\_" (e.g., "ID_gene" if initial search queries were genes). + - Column(s) with grouping factor(s) to compare pre-existing categories of the initial search queries with the grouping based on text. The column names should start with "GROUPING\_". If the column name is "GROUPING_disorder", "disorder" will be shown as a grouping variable in the app. + Input 2: + The output of 'text_to_wordmatrix' or 'pmids_to_pubtator_matrix' tools, or a binary matrix.]]> + </help> <expand macro="citations"/> </tool> \ No newline at end of file