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comparison blastx_to_scaffold.xml @ 1:940c0c669e96 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/blastx_to_scaffold commit b6de14061c479f0418cd89e26d6f5ac26e565a07
author drosofff
date Wed, 09 Nov 2016 11:39:20 -0500
parents a2e034f1638e
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0:a2e034f1638e 1:940c0c669e96
28 28
29 <help> 29 <help>
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31 31
32 **What it Does** 32 **What it Does**
33 This tool start from DNA contigs that aligned to a subject protein sequence through blastx. 33 This tool starts from DNA contigs that aligned to a subject protein sequence through blastx.
34 The contigs must be provided in fasta format. The blastx output must be tabular, the 12 standard column plus column 13 with the length of the blastx subject. 34 The contigs must be provided in fasta format. The blastx output must be tabular, the 12 standard column plus column 13 with the length of the blastx subject.
35 The final scaffold is a DNA sequence. 35 The final scaffold is a DNA sequence.
36 Sequences of the subject protein which were not aligned to the contigs are replaced by Ns in this scaffold. 36 Sequences of the subject protein which were not aligned to the contigs are replaced by Ns in this scaffold.
37 37
38 **Attribution** 38 **Attribution**