Mercurial > repos > drosofff > msp_sr_readmap_and_size_histograms

changeset 15:ee1e4c892e9d draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit 170951554bb5674a7b2b7a13a03a3422a91af38d
author drosofff
date Wed, 20 Dec 2017 18:41:56 -0500
parents acc5e710dc19
children 1b8108a02da3
files readmap.xml
diffstat 1 files changed, 6 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/readmap.xml	Wed Dec 20 11:58:16 2017 -0500
+++ b/readmap.xml	Wed Dec 20 18:41:56 2017 -0500
@@ -1,15 +1,14 @@
-<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.5">
+<tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.6">
     <description>from sRbowtie aligment</description>
-    <requirements>
-        <requirement type="package" version="1.2.0=py27_0">bowtie</requirement>
+  <requirements>
+        <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
         <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement>
-        <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
         <requirement type="package" version="0.6_28=r3.3.2_0">r-latticeextra</requirement>
         <requirement type="package" version="2.2.1=r3.3.2_0">r-gridextra</requirement>
-
-    </requirements>
-    <command><![CDATA[
+        <requirement type="package" version="1.4.2=r3.3.2_0">r-reshape2</requirement>
+  </requirements>
+  <command><![CDATA[
         python2 $__tool_directory__/readmap.py
         #if $refGenomeSource.genomeSource == "history":
             --reference_fasta