Mercurial > repos > drosofff > package_ged_oases
view tool_dependencies.xml @ 1:76e8c94ea259 draft default tip
planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author | drosofff |
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date | Mon, 22 Jun 2015 10:38:03 -0400 |
parents | 853ebf512cc7 |
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<?xml version="1.0"?> <tool_dependency> <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3"> <repository changeset_revision="517ddcce2fa4" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123"> <install version="1.0"> <actions> <action type="shell_command">git clone git://github.com/dzerbino/oases.git</action> <action type="shell_command">git reset --hard 7a32460a60929b510037952ae815bb6e29b68123</action> <action type="shell_command">sed -i -e "32s/cleanobj//" Makefile</action> <action type="shell_command">sed -i -e "32s/doc//" Makefile</action> <action type="set_environment_for_install"> <repository changeset_revision="517ddcce2fa4" name="package_ged_velvet" owner="drosofff" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3" /> </repository> </action> <action type="shell_command">make VELVET_DIR=$VELVET_DIR MAXKMERLENGTH=70</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$ENV[VELVET_DIR]:$INSTALL_DIR</environment_variable> </action> </actions> </install> </package> </tool_dependency>