Mercurial > repos > drosofff > repenrich

comparison repenrich.xml @ 6:77807fc5d609 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit e9282183531bacbb4bbe2d6e53258f6e0ad0bc34
author drosofff
date Wed, 31 May 2017 13:09:15 -0400
parents ea5bba2c569f
children 6df84986c146
comparison
equal deleted inserted replaced
5:ea5bba2c569f 6:77807fc5d609
1 <tool id="repenrich" name="RepEnrich" version="1.2.0"> 1 <tool id="repenrich" name="RepEnrich" version="1.3.0">
2 <description>Repeat Element Profiling</description> 2 <description>Repeat Element Profiling</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.2.0">bowtie</requirement> 4 <requirement type="package" version="1.2.0">bowtie</requirement>
5 <requirement type="package" version="0.1.19">samtools</requirement> 5 <requirement type="package" version="0.1.19">samtools</requirement>
6 <requirement type="package" version="2.20.1">bedtools</requirement> 6 <requirement type="package" version="2.20.1">bedtools</requirement>
84 <output name="bowtie_alignments" file="aligned_reads.tab" ftype="tabular"/> 84 <output name="bowtie_alignments" file="aligned_reads.tab" ftype="tabular"/>
85 <output name="class_fraction_counts" file="Samp_class_fraction_counts.tabular" ftype="tabular"/> 85 <output name="class_fraction_counts" file="Samp_class_fraction_counts.tabular" ftype="tabular"/>
86 <output name="family_fraction_counts" file="Samp_family_fraction_counts.tabular" ftype="tabular"/> 86 <output name="family_fraction_counts" file="Samp_family_fraction_counts.tabular" ftype="tabular"/>
87 <output name="fraction_counts" file="Samp_fraction_counts.tabular" ftype="tabular"/> 87 <output name="fraction_counts" file="Samp_fraction_counts.tabular" ftype="tabular"/>
88 </test> 88 </test>
89 </tests> 89 <test>
90 <param name="seq_method_list" value="paired-end"/>
91 <param name="input_fastq" value="Samp_L.fastq" ftype="fastq"/>
92 <param name="input2_fastq" value="Samp_R.fastq" ftype="fastq"/>
93 <param name="genome" value="chrM.fa" ftype="fasta"/>
94 <param name="repeatmasker" value="chrM_repeatmasker.txt" ftype="txt"/>
95 <output name="bowtie_alignments" file="paired-aligned_reads.tab" ftype="tabular"/>
96 <output name="class_fraction_counts" file="Samp-paired_class_fraction_counts.tab" ftype="tabular"/>
97 <output name="family_fraction_counts" file="Samp-paired_family_fraction_counts.tab" ftype="tabular"/>
98 <output name="fraction_counts" file="Samp-paired_fraction_counts.tab" ftype="tabular"/>
99 </test>
100 </tests>
90 101
91 <help> 102 <help>
92 103
93 **What it does** 104 **What it does**
94 105