Mercurial > repos > earlhaminst > blast_parser

diff blast_parser.xml @ 2:376ed15e0d27 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/blast_parser commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2
author earlhaminst
date Fri, 24 Mar 2017 12:14:47 -0400
parents fd11653657f9
children 70df762b48a8
line wrap: on
line diff
--- a/blast_parser.xml	Mon Dec 12 07:22:09 2016 -0500
+++ b/blast_parser.xml	Fri Mar 24 12:14:47 2017 -0400
@@ -3,11 +3,11 @@
         Convert 12- or 24-column BLAST output into 3-column hcluster_sg input
     </description>
 
-    <command>
+    <command detect_errors="exit_code">
 <![CDATA[
-perl $__tool_directory__/blast_parser.pl
-$input
-> $output
+perl '$__tool_directory__/blast_parser.pl'
+'$input'
+> '$output'
 ]]>
     </command>