changeset 6:0618e3bd5138 draft

"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit 17c65045b726d0695814bfe761e534f6521786f1"
author earlhaminst
date Tue, 20 Oct 2020 15:06:37 +0000
parents 675fd774314e
children 515e7181d5e9
files get_feature_info.py get_genetree.py get_genetree.xml get_sequences.py
diffstat 4 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/get_feature_info.py	Thu Oct 31 07:49:30 2019 -0400
+++ b/get_feature_info.py	Tue Oct 20 15:06:37 2020 +0000
@@ -23,7 +23,7 @@
     raise Exception('-i option must be specified')
 
 
-server = 'http://rest.ensembl.org'
+server = 'https://rest.ensembl.org'
 ext = 'lookup/id'
 
 headers = {'Content-Type': 'application/json', 'Accept': 'application/json'}
@@ -42,7 +42,7 @@
             print(",")
         data = {'ids': ids}
         r = requests.post(urljoin(server, ext), params=params, headers=headers,
-                          data=json.dumps(data))
+                          data=json.dumps(data), allow_redirects=False)
 
         if not r.ok:
             r.raise_for_status()
--- a/get_genetree.py	Thu Oct 31 07:49:30 2019 -0400
+++ b/get_genetree.py	Tue Oct 20 15:06:37 2020 +0000
@@ -31,7 +31,7 @@
 if options.input is None:
     raise Exception('-i option must be specified')
 
-server = 'http://rest.ensembl.org'
+server = 'https://rest.ensembl.org'
 
 if options.id_type == 'gene_id':
     ext = 'genetree/member/id'
--- a/get_genetree.xml	Thu Oct 31 07:49:30 2019 -0400
+++ b/get_genetree.xml	Tue Oct 20 15:06:37 2020 +0000
@@ -166,8 +166,8 @@
 
 Uses the `"GET genetree/id"`_ and `"GET genetree/member/id"`_ API endpoint.
 
-.. _"GET genetree/id": http://rest.ensembl.org/documentation/info/genetree
-.. _"GET genetree/member/id": http://rest.ensembl.org/documentation/info/genetree_member_id
+.. _"GET genetree/id": https://rest.ensembl.org/documentation/info/genetree
+.. _"GET genetree/member/id": https://rest.ensembl.org/documentation/info/genetree_member_id
 ]]>
     </help>
     <citations>
--- a/get_sequences.py	Thu Oct 31 07:49:30 2019 -0400
+++ b/get_sequences.py	Tue Oct 20 15:06:37 2020 +0000
@@ -23,7 +23,7 @@
 if options.input is None:
     raise Exception('-i option must be specified')
 
-server = 'http://rest.ensembl.org'
+server = 'https://rest.ensembl.org'
 ext = 'sequence/id'
 
 headers = {'Content-Type': 'text/x-fasta', 'Accept': 'text/x-fasta'}
@@ -36,7 +36,7 @@
             break
         data = {'ids': ids}
         r = requests.post(urljoin(server, ext), params=params, headers=headers,
-                          data=json.dumps(data))
+                          data=json.dumps(data), allow_redirects=False)
 
         if not r.ok:
             r.raise_for_status()