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annotate test-data/lineage-compress.txt @ 12:dc32007a6b36 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit c568584f1eaa1366603b89db7e52994812f5d387
author earlhaminst
date Tue, 07 Jun 2022 08:58:05 +0000
parents f1eca1158f21
children
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6
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
earlhaminst
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1 # query kingdom phylum class order family genus species
2
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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2 Latimeria chalumnae Eukaryota Chordata NA Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
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3 Xenopus tropicalis Eukaryota Chordata Amphibia Batrachia Pipoidea Xenopus Xenopus tropicalis
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4 Ornithorhynchus anatinus Eukaryota Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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5 Macropus eugenii Eukaryota Chordata Mammalia Diprotodontia Macropodidae Notamacropus Notamacropus eugenii
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6 Sarcophilus harrisii Eukaryota Chordata Mammalia Dasyuromorphia Dasyuridae Sarcophilus Sarcophilus harrisii
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7 Monodelphis domestica Eukaryota Chordata Mammalia Didelphimorphia Didelphidae Monodelphis Monodelphis domestica
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8 Echinops telfairi Eukaryota Chordata Mammalia Afrotheria Tenrecidae Echinops Echinops telfairi
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9 Procavia capensis Eukaryota Chordata Mammalia Afrotheria Procaviidae Procavia Procavia capensis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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10 Loxodonta africana Eukaryota Chordata Mammalia Afrotheria Elephantidae Loxodonta Loxodonta africana
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11 Dasypus novemcinctus Eukaryota Chordata Mammalia Xenarthra Dasypodidae Dasypus Dasypus novemcinctus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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12 Choloepus hoffmanni Eukaryota Chordata Mammalia Xenarthra Megalonychidae Choloepus Choloepus hoffmanni
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13 Ochotona princeps Eukaryota Chordata Mammalia Euarchontoglires Ochotonidae Ochotona Ochotona princeps
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14 Oryctolagus cuniculus Eukaryota Chordata Mammalia Euarchontoglires Leporidae Oryctolagus Oryctolagus cuniculus
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15 Cavia porcellus Eukaryota Chordata Mammalia Euarchontoglires Caviidae Cavia Cavia porcellus
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16 Ictidomys tridecemlineatus Eukaryota Chordata Mammalia Euarchontoglires Sciuridae Ictidomys Ictidomys tridecemlineatus
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17 Dipodomys ordii Eukaryota Chordata Mammalia Euarchontoglires Heteromyidae Dipodomys Dipodomys ordii
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18 Rattus norvegicus Eukaryota Chordata Mammalia Euarchontoglires Muridae Rattus Rattus norvegicus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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19 Mus musculus Eukaryota Chordata Mammalia Euarchontoglires Muridae Mus Mus musculus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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20 Tupaia belangeri Eukaryota Chordata Mammalia Euarchontoglires Tupaiidae Tupaia Tupaia belangeri
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21 Otolemur garnettii Eukaryota Chordata Mammalia Euarchontoglires Galagidae Otolemur Otolemur garnettii
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22 Microcebus murinus Eukaryota Chordata Mammalia Euarchontoglires Cheirogaleidae Microcebus Microcebus murinus
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23 Tarsius syrichta Eukaryota Chordata Mammalia Euarchontoglires Tarsiidae Carlito Carlito syrichta
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24 Callithrix jacchus Eukaryota Chordata Mammalia Euarchontoglires Cebidae Callithrix Callithrix jacchus
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25 Chlorocebus sabaeus Eukaryota Chordata Mammalia Euarchontoglires Cercopithecoidea Chlorocebus Chlorocebus sabaeus
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26 Papio anubis Eukaryota Chordata Mammalia Euarchontoglires Cercopithecoidea Papio Papio anubis
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27 Macaca mulatta Eukaryota Chordata Mammalia Euarchontoglires Cercopithecoidea Macaca Macaca mulatta
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28 Nomascus leucogenys Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Nomascus Nomascus leucogenys
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29 Pongo abelii Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Pongo Pongo abelii
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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30 Gorilla gorilla gorilla Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Gorilla Gorilla gorilla
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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31 Pan troglodytes Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Pan Pan troglodytes
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32 Homo sapiens Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Homo Homo sapiens
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33 Sorex araneus Eukaryota Chordata Mammalia Laurasiatheria Soricidae Sorex Sorex araneus
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34 Erinaceus europaeus Eukaryota Chordata Mammalia Laurasiatheria Erinaceidae Erinaceus Erinaceus europaeus
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35 Pteropus vampyrus Eukaryota Chordata Mammalia Laurasiatheria Pteropodidae Pteropus Pteropus vampyrus
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36 Myotis lucifugus Eukaryota Chordata Mammalia Laurasiatheria Vespertilionidae Myotis Myotis lucifugus
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37 Felis catus Eukaryota Chordata Mammalia Laurasiatheria Felidae Felis Felis catus
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38 Canis lupus familiaris Eukaryota Chordata Mammalia Laurasiatheria Canidae Canis Canis lupus
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39 Mustela putorius furo Eukaryota Chordata Mammalia Laurasiatheria Mustelidae Mustela Mustela putorius
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40 Ailuropoda melanoleuca Eukaryota Chordata Mammalia Laurasiatheria Ursidae Ailuropoda Ailuropoda melanoleuca
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41 Equus caballus Eukaryota Chordata Mammalia Laurasiatheria Equidae Equus Equus caballus
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42 Vicugna pacos Eukaryota Chordata Mammalia Laurasiatheria Camelidae Vicugna Vicugna pacos
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43 Sus scrofa Eukaryota Chordata Mammalia Laurasiatheria Suidae Sus Sus scrofa
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44 Tursiops truncatus Eukaryota Chordata Mammalia Laurasiatheria Delphinidae Tursiops Tursiops truncatus
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45 Ovis aries Eukaryota Chordata Mammalia Laurasiatheria Bovidae Ovis Ovis aries
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46 Bos taurus Eukaryota Chordata Mammalia Laurasiatheria Bovidae Bos Bos taurus
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47 Anolis carolinensis Eukaryota Chordata NA Lepidosauria Dactyloidae Anolis Anolis carolinensis
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48 Pelodiscus sinensis Eukaryota Chordata NA Testudines Trionychidae Pelodiscus Pelodiscus sinensis
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49 Taeniopygia guttata Eukaryota Chordata Aves Neognathae Passeroidea Taeniopygia Taeniopygia guttata
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50 Ficedula albicollis Eukaryota Chordata Aves Neognathae Muscicapidae Ficedula Ficedula albicollis
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51 Anas platyrhynchos Eukaryota Chordata Aves Neognathae Anatidae Anas Anas platyrhynchos
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52 Meleagris gallopavo Eukaryota Chordata Aves Neognathae Phasianidae Meleagris Meleagris gallopavo
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53 Gallus gallus Eukaryota Chordata Aves Neognathae Phasianidae Gallus Gallus gallus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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54 Lepisosteus oculatus Eukaryota Chordata Actinopterygii Semionotiformes Lepisosteidae Lepisosteus Lepisosteus oculatus
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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55 Danio rerio Eukaryota Chordata Actinopterygii Cypriniphysae Cyprinoidea Danio Danio rerio
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56 Astyanax mexicanus Eukaryota Chordata Actinopterygii Characiphysae Characidae Astyanax Astyanax mexicanus
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57 Gadus morhua Eukaryota Chordata Actinopterygii Gadiformes Gadidae Gadus Gadus morhua
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58 Oreochromis niloticus Eukaryota Chordata Actinopterygii Cichlomorphae Cichlidae Oreochromis Oreochromis niloticus
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59 Poecilia formosa Eukaryota Chordata Actinopterygii Atherinomorphae Poeciliidae Poecilia Poecilia formosa
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60 Xiphophorus maculatus Eukaryota Chordata Actinopterygii Atherinomorphae Poeciliidae Xiphophorus Xiphophorus maculatus
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61 Gasterosteus aculeatus Eukaryota Chordata Actinopterygii Perciformes Gasterosteidae Gasterosteus Gasterosteus aculeatus
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62 Tetraodon nigroviridis Eukaryota Chordata Actinopterygii Tetraodontiformes Tetradontoidea Tetraodon Tetraodon nigroviridis
03c10736e497 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 91b634b8f9b131045bbbbf43cc8edbea59ac686b-dirty
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63 Takifugu rubripes Eukaryota Chordata Actinopterygii Tetraodontiformes Tetradontoidea Takifugu Takifugu rubripes