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annotate test-data/lineage-wid.txt @ 14:d40b9a7debe5 draft default tip

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 71b9c1035f713be174bfcf5ecb20804495f39258
author earlhaminst
date Thu, 07 Mar 2024 19:39:30 +0000
parents f1eca1158f21
children
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f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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1 # query taxid kingdom phylum class order family genus species
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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2 Latimeria chalumnae 7897 Eukaryota Chordata NA Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
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3 Xenopus tropicalis 8364 Eukaryota Chordata Amphibia Batrachia Pipoidea Xenopus Xenopus tropicalis
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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4 Ornithorhynchus anatinus 9258 Eukaryota Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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5 Macropus eugenii 9315 Eukaryota Chordata Mammalia Diprotodontia Macropodidae Notamacropus Notamacropus eugenii
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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6 Sarcophilus harrisii 9305 Eukaryota Chordata Mammalia Dasyuromorphia Dasyuridae Sarcophilus Sarcophilus harrisii
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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7 Monodelphis domestica 13616 Eukaryota Chordata Mammalia Didelphimorphia Didelphidae Monodelphis Monodelphis domestica
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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8 Echinops telfairi 9371 Eukaryota Chordata Mammalia Afrotheria Tenrecidae Echinops Echinops telfairi
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9 Procavia capensis 9813 Eukaryota Chordata Mammalia Afrotheria Procaviidae Procavia Procavia capensis
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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10 Loxodonta africana 9785 Eukaryota Chordata Mammalia Afrotheria Elephantidae Loxodonta Loxodonta africana
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11 Dasypus novemcinctus 9361 Eukaryota Chordata Mammalia Xenarthra Dasypodidae Dasypus Dasypus novemcinctus
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12 Choloepus hoffmanni 9358 Eukaryota Chordata Mammalia Xenarthra Megalonychidae Choloepus Choloepus hoffmanni
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13 Ochotona princeps 9978 Eukaryota Chordata Mammalia Euarchontoglires Ochotonidae Ochotona Ochotona princeps
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14 Oryctolagus cuniculus 9986 Eukaryota Chordata Mammalia Euarchontoglires Leporidae Oryctolagus Oryctolagus cuniculus
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15 Cavia porcellus 10141 Eukaryota Chordata Mammalia Euarchontoglires Caviidae Cavia Cavia porcellus
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16 Ictidomys tridecemlineatus 43179 Eukaryota Chordata Mammalia Euarchontoglires Sciuridae Ictidomys Ictidomys tridecemlineatus
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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17 Dipodomys ordii 10020 Eukaryota Chordata Mammalia Euarchontoglires Heteromyidae Dipodomys Dipodomys ordii
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18 Rattus norvegicus 10116 Eukaryota Chordata Mammalia Euarchontoglires Muridae Rattus Rattus norvegicus
f1eca1158f21 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 133bb57feca9672734d664e6b34e428488cf2e73
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19 Mus musculus 10090 Eukaryota Chordata Mammalia Euarchontoglires Muridae Mus Mus musculus
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20 Tupaia belangeri 37347 Eukaryota Chordata Mammalia Euarchontoglires Tupaiidae Tupaia Tupaia belangeri
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21 Otolemur garnettii 30611 Eukaryota Chordata Mammalia Euarchontoglires Galagidae Otolemur Otolemur garnettii
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22 Microcebus murinus 30608 Eukaryota Chordata Mammalia Euarchontoglires Cheirogaleidae Microcebus Microcebus murinus
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23 Tarsius syrichta 1868482 Eukaryota Chordata Mammalia Euarchontoglires Tarsiidae Carlito Carlito syrichta
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24 Callithrix jacchus 9483 Eukaryota Chordata Mammalia Euarchontoglires Cebidae Callithrix Callithrix jacchus
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25 Chlorocebus sabaeus 60711 Eukaryota Chordata Mammalia Euarchontoglires Cercopithecoidea Chlorocebus Chlorocebus sabaeus
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26 Papio anubis 9555 Eukaryota Chordata Mammalia Euarchontoglires Cercopithecoidea Papio Papio anubis
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27 Macaca mulatta 9544 Eukaryota Chordata Mammalia Euarchontoglires Cercopithecoidea Macaca Macaca mulatta
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28 Nomascus leucogenys 61853 Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Nomascus Nomascus leucogenys
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29 Pongo abelii 9601 Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Pongo Pongo abelii
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30 Gorilla gorilla gorilla 9595 Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Gorilla Gorilla gorilla
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31 Pan troglodytes 9598 Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Pan Pan troglodytes
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32 Homo sapiens 9606 Eukaryota Chordata Mammalia Euarchontoglires Hominoidea Homo Homo sapiens
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33 Sorex araneus 42254 Eukaryota Chordata Mammalia Laurasiatheria Soricidae Sorex Sorex araneus
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34 Erinaceus europaeus 9365 Eukaryota Chordata Mammalia Laurasiatheria Erinaceidae Erinaceus Erinaceus europaeus
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35 Pteropus vampyrus 132908 Eukaryota Chordata Mammalia Laurasiatheria Pteropodidae Pteropus Pteropus vampyrus
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36 Myotis lucifugus 59463 Eukaryota Chordata Mammalia Laurasiatheria Vespertilionidae Myotis Myotis lucifugus
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37 Felis catus 9685 Eukaryota Chordata Mammalia Laurasiatheria Felidae Felis Felis catus
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38 Canis lupus familiaris 9615 Eukaryota Chordata Mammalia Laurasiatheria Canidae Canis Canis lupus
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39 Mustela putorius furo 9669 Eukaryota Chordata Mammalia Laurasiatheria Mustelidae Mustela Mustela putorius
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40 Ailuropoda melanoleuca 9646 Eukaryota Chordata Mammalia Laurasiatheria Ursidae Ailuropoda Ailuropoda melanoleuca
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41 Equus caballus 9796 Eukaryota Chordata Mammalia Laurasiatheria Equidae Equus Equus caballus
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42 Vicugna pacos 30538 Eukaryota Chordata Mammalia Laurasiatheria Camelidae Vicugna Vicugna pacos
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43 Sus scrofa 9823 Eukaryota Chordata Mammalia Laurasiatheria Suidae Sus Sus scrofa
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44 Tursiops truncatus 9739 Eukaryota Chordata Mammalia Laurasiatheria Delphinidae Tursiops Tursiops truncatus
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45 Ovis aries 9940 Eukaryota Chordata Mammalia Laurasiatheria Bovidae Ovis Ovis aries
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46 Bos taurus 9913 Eukaryota Chordata Mammalia Laurasiatheria Bovidae Bos Bos taurus
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47 Anolis carolinensis 28377 Eukaryota Chordata NA Lepidosauria Dactyloidae Anolis Anolis carolinensis
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48 Pelodiscus sinensis 13735 Eukaryota Chordata NA Testudines Trionychidae Pelodiscus Pelodiscus sinensis
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49 Taeniopygia guttata 59729 Eukaryota Chordata Aves Neognathae Passeroidea Taeniopygia Taeniopygia guttata
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50 Ficedula albicollis 59894 Eukaryota Chordata Aves Neognathae Muscicapidae Ficedula Ficedula albicollis
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51 Anas platyrhynchos 8839 Eukaryota Chordata Aves Neognathae Anatidae Anas Anas platyrhynchos
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52 Meleagris gallopavo 9103 Eukaryota Chordata Aves Neognathae Phasianidae Meleagris Meleagris gallopavo
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53 Gallus gallus 9031 Eukaryota Chordata Aves Neognathae Phasianidae Gallus Gallus gallus
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54 Lepisosteus oculatus 7918 Eukaryota Chordata Actinopterygii Semionotiformes Lepisosteidae Lepisosteus Lepisosteus oculatus
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55 Danio rerio 7955 Eukaryota Chordata Actinopterygii Cypriniphysae Cyprinoidea Danio Danio rerio
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56 Astyanax mexicanus 7994 Eukaryota Chordata Actinopterygii Characiphysae Characidae Astyanax Astyanax mexicanus
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57 Gadus morhua 8049 Eukaryota Chordata Actinopterygii Gadiformes Gadidae Gadus Gadus morhua
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58 Oreochromis niloticus 8128 Eukaryota Chordata Actinopterygii Cichlomorphae Cichlidae Oreochromis Oreochromis niloticus
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59 Poecilia formosa 48698 Eukaryota Chordata Actinopterygii Atherinomorphae Poeciliidae Poecilia Poecilia formosa
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60 Xiphophorus maculatus 8083 Eukaryota Chordata Actinopterygii Atherinomorphae Poeciliidae Xiphophorus Xiphophorus maculatus
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61 Gasterosteus aculeatus 69293 Eukaryota Chordata Actinopterygii Perciformes Gasterosteidae Gasterosteus Gasterosteus aculeatus
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62 Tetraodon nigroviridis 99883 Eukaryota Chordata Actinopterygii Tetraodontiformes Tetradontoidea Tetraodon Tetraodon nigroviridis
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63 Takifugu rubripes 31033 Eukaryota Chordata Actinopterygii Tetraodontiformes Tetradontoidea Takifugu Takifugu rubripes