Mercurial > repos > earlhaminst > export_to_cluster

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/export_to_cluster/ commit d96cd7ee9c686c185b6734aa08ab5a891cc44149-dirty
author earlhaminst
date Mon, 03 Mar 2025 17:49:27 +0000
parents 9838eed606ad
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8b8466d30d50 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/export_to_cluster/ commit d96cd7ee9c686c185b6734aa08ab5a891cc44149-dirty
earlhaminst
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1 <tool id="export_to_cluster" name="Export datasets to cluster" version="0.1.0">
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0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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2 <requirements>
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8b8466d30d50 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/export_to_cluster/ commit d96cd7ee9c686c185b6734aa08ab5a891cc44149-dirty
earlhaminst
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3 <requirement type="package" version="3.13">python</requirement>
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0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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4 <requirement type="set_environment">EXPORT_DIR_PREFIX</requirement>
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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5 </requirements>
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9838eed606ad planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit 68b62fd9a9d5586ccd539779873af17124b7dbb5
earlhaminst
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6 <command detect_errors="aggressive"><![CDATA[
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8b8466d30d50 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/export_to_cluster/ commit d96cd7ee9c686c185b6734aa08ab5a891cc44149-dirty
earlhaminst
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7 python3 '$__tool_directory__/export_to_cluster.py' -d '$export_dir' -p "\$EXPORT_DIR_PREFIX"
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0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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8 #for $d in $datasets
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9838eed606ad planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit 68b62fd9a9d5586ccd539779873af17124b7dbb5
earlhaminst
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9 '${d}' '${d.hid}: ${d.element_identifier}' '${d.ext}'
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0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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10 #end for
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earlhaminst
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11 > '$log'
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9838eed606ad planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit 68b62fd9a9d5586ccd539779873af17124b7dbb5
earlhaminst
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12 ]]></command>
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0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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13 <inputs>
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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14 <param name="datasets" type="data" format="data" multiple="true" label="Datasets to export" />
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
parents:
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15 <param name="export_dir" type="text" value="" label="Directory where to export the datasets" help="Must be writable by the Galaxy user">
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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16 <validator type="empty_field" />
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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17 <sanitizer sanitize="false" />
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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18 </param>
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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19 </inputs>
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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20 <outputs>
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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21 <data name="log" format="txt" />
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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22 </outputs>
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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23 <tests>
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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24 </tests>
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9838eed606ad planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit 68b62fd9a9d5586ccd539779873af17124b7dbb5
earlhaminst
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25 <help><![CDATA[
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0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
earlhaminst
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26 Simple tool to copy datasets to a directory on the cluster.
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9838eed606ad planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit 68b62fd9a9d5586ccd539779873af17124b7dbb5
earlhaminst
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27 ]]></help>
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0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
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28 <citations/>
0dbe46f58158 planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit e80af91bced56efdb4fbf62ac03232655a22f25d-dirty
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29 </tool>