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comparison test-data/Caenorhabditis_elegans.WBcel235.cds.all.shortened.fa @ 0:28879ca33b5f draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit 651fae48371f845578753052c6fe173e3bb35670
author earlhaminst
date Wed, 15 Mar 2017 20:18:57 -0400
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comparison
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-1:000000000000 0:28879ca33b5f
1 >Y74C9A.3 cds chromosome:WBcel235:I:4119:10230:-1 gene:WBGene00022277 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:homt-1 description:Alpha N-terminal protein methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9N4D9]
2 ATGAGCTCTTCATCATCTTCTAGAATTCACAATGGTGAAGATGTTTATGAAAAGGCGGAG
3 GAATACTGGAGCCGCGCGAGCCAGGACGTCAACGGAATGCTCGGCGGATTCGAAGCGCTT
4 CACGCGCCCGACATATCGGCGTCGAAACGATTTATTGAAGGACTGAAGAAAAAGAATCTA
5 TTCGGCTACTTTGACTATGCACTGGACTGCGGAGCGGGTATCGGACGTGTTACAAAGCAT
6 CTCTTAATGCCATTCTTCTCGAAAGTTGATATGGAAGACGTCGTCGAGGAGTTGATCACG
7 AAAAGTGATCAATATATTGGAAAACATCCACGAATTGGAGATAAATTCGTCGAAGGACTG
8 CAGACGTTTGCACCGCCCGAACGACGTTATGATTTGATATGGATTCAATGGGTTTCAGGG
9 CATTTGGTTGATGAGGATTTGGTTGATTTCTTTAAAAGATGTGCGAAAGGACTGAAACCT
10 GGTGGATGTATTGTGCTCAAGGATAATGTGACAAATCACGAGAAACGGTTATTCGACGAT
11 GATGATCATAGTTGGACGAGAACAGAGCCCGAGCTTCTTAAAGCGTTCGCCGATTCTCAA
12 CTGGACATGGTCTCGAAAGCACTGCAAACCGGATTCCCAAAGGAGATTTATCCAGTAAAA
13 ATGTATGCATTGAAGCCTCAACACACCGGATTCACCAATAATTGA
14 >Y74C9A.2a.1 cds chromosome:WBcel235:I:11618:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_001293206]
15 ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
16 GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
17 AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
18 GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
19 GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
20 GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
21 CAATTCCAATAA
22 >Y74C9A.2a.2 cds chromosome:WBcel235:I:10413:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_001293206]
23 ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
24 GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
25 AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
26 GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
27 GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
28 GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
29 CAATTCCAATAA
30 >Y74C9A.2a.3 cds chromosome:WBcel235:I:11505:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_001293206]
31 ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
32 GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
33 AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
34 GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
35 GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
36 GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
37 CAATTCCAATAA
38 >Y74C9A.2b.1 cds chromosome:WBcel235:I:11499:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_001293206]
39 ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
40 CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
41 AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
42 >Y74C9A.2b.2 cds chromosome:WBcel235:I:11495:16793:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_001293206]
43 ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
44 CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
45 AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
46 >Y74C9A.2b.3 cds chromosome:WBcel235:I:11623:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_001293206]
47 ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
48 CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
49 AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
50 >Y74C9A.2b.4 cds chromosome:WBcel235:I:11499:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein [Source:RefSeq peptide;Acc:NP_001293206]
51 ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
52 CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
53 AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
54 >Y74C9A.4a cds chromosome:WBcel235:I:17483:26781:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide;Acc:NP_001293207]
55 ATGGATTCGTACACGTCATCTGACGAAGACGCCTCTCGAAAAGAAAACGAAGGCTTGAAT
56 ATGTTGAATGCATCGCCGGAGCCAATGGAGGAAGATGATCCAGAGGAGCAGGCGGAACAA
57 GAAGAAGAAACCAGCAGAATGGCTCGTCCTATAAGATCCATGAGAAAACGCGAAACAACG
58 TCTGGGGAATCAATGGGCGATGAGGATGAAGATTTGGAGGATGAAGAGGACGAAGATGAA
59 GAAGCTGAAGCTCGTGAGCATCATGAAAGTGGTGCTCATGACACATCTTTCTCAAATCCA
60 CTTTCCAACGTCGACAATCTAATCCACGTGGGAACCGAATATCAGGCGATTATACAGCCA
61 ACTGCAGAGCAATTGGAAAAAGAACCGTGCAGAGATCAACAAATTTGGGCGTTTCCAGAC
62 GAAATGAACGAGAATCGGCTTACAGAATACATTTCAGAAGCTACTGGACGATATCAATTA
63 CCTATAGATAGGGCTCTGTTCATTCTGAACAAACAGTCAAATGATTTCGACGCTGCGATG
64 GTTCAAGCGATGAGAAGAAAAGAAATTCATGATGATTGGACGGCAGAAGAAATTAGTCTT
65 TTCTCCACTTGCTTCTTTCATTTCGGAAAACGGTTCAAGAAGATTCATGCGGCTATGCCC
66 CAACGCTCGCTTTCTTCCATTATCCAATACTATTACAACACGAAAAAAGTGCAAAACTAT
67 AAAACAATGATTAATGTGCATTTGAATGAAACCGACACTTATGATGAACTATTCAAAGAG
68 GTCAATCATTTGGAGAGGGTTCCGTCGGGATATTGTGAGAATTGCAATGCAAAAAGTGAT
69 CTGTTGATTCTAAATCGTGTAATGTCGCGTCACGAATGTAAACCGTGTATCCTTTATTTC
70 CGTTTGATGCGTGTTCCACGTCCGGCAAGCCTCCGTGCACTGACAAAACGACGGCAACGA
71 GTTTTATGTCCAGAATACATGAAAATTTATGTATACGGATATCTTGAGCTCATGGAGCCA
72 GCCAACGGAAAAGCGATCAAACGGCTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGAT
73 ATTATGGTGGTCGACGACTGCCTTCTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAA
74 TCGATTGAAGCTGATCCAATCGATGAGAATACGTGCAGAATGACACGGTGCTTCGATACA
75 CCGGCTGCACTGGCATTAATTGATAATATCAAGAGAAAACATCATATGTGTGTTCCACTT
76 GTTTGGAGAGTTAAACAAACGAAATGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCC
77 CGTCAACAAATGTTCCGTGCAACAATGACATACAGCCGTGTACCAAAAGGAGAAATTGCA
78 AATTGGAAGAAAGATATGATGGCGTTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTA
79 GATACTACTGCAACAAATGGCAATCGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGT
80 CCTGAGGAAAAGAAGAATGCTATTAGATGTTTCCACTGGTACAAGGACAATTTCGAGTTG
81 ATCGCCGAGTTGATGGCCACAAAAACTGTGGAACAAATCAAAAAGTTCTATATGGACAAT
82 GAAAAGCTAATTTTGGAGTCAATCGACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGC
83 AAATAA
84 >Y74C9A.4b cds chromosome:WBcel235:I:17483:26778:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide;Acc:NP_001293207]
85 ATGGATTCGTACACGTCATCTGACGAAGACGCCTCTCGAAAAGAAAATATTTCAGACGAA
86 GGCTTGAATATGTTGAATGCATCGCCGGAGCCAATGGAGGAAGATGATCCAGAGGAGCAG
87 GCGGAACAAGAAGAAGAAACCAGCAGAATGGCTCGTCCTATAAGATCCATGAGAAAACGC
88 GAAACAACGTCTGGGGAATCAATGGGCGATGAGGATGAAGATTTGGAGGATGAAGAGGAC
89 GAAGATGAAGAAGCTGAAGCTCGTGAGCATCATGAAAGTGGTGCTCATGACACATCTTTC
90 TCAAATCCACTTTCCAACGTCGACAATCTAATCCACGTGGGAACCGAATATCAGGCGATT
91 ATACAGCCAACTGCAGAGCAATTGGAAAAAGAACCGTGCAGAGATCAACAAATTTGGGCG
92 TTTCCAGACGAAATGAACGAGAATCGGCTTACAGAATACATTTCAGAAGCTACTGGACGA
93 TATCAATTACCTATAGATAGGGCTCTGTTCATTCTGAACAAACAGTCAAATGATTTCGAC
94 GCTGCGATGGTTCAAGCGATGAGAAGAAAAGAAATTCATGATGATTGGACGGCAGAAGAA
95 ATTAGTCTTTTCTCCACTTGCTTCTTTCATTTCGGAAAACGGTTCAAGAAGATTCATGCG
96 GCTATGCCCCAACGCTCGCTTTCTTCCATTATCCAATACTATTACAACACGAAAAAAGTG
97 CAAAACTATAAAACAATGATTAATGTGCATTTGAATGAAACCGACACTTATGATGAACTA
98 TTCAAAGAGGTCAATCATTTGGAGAGGGTTCCGTCGGGATATTGTGAGAATTGCAATGCA
99 AAAAGTGATCTGTTGATTCTAAATCGTGTAATGTCGCGTCACGAATGTAAACCGTGTATC
100 CTTTATTTCCGTTTGATGCGTGTTCCACGTCCGGCAAGCCTCCGTGCACTGACAAAACGA
101 CGGCAACGAGTTTTATGTCCAGAATACATGAAAATTTATGTATACGGATATCTTGAGCTC
102 ATGGAGCCAGCCAACGGAAAAGCGATCAAACGGCTTGGAATTGGAAAAGAAAAAGAAGAA
103 GACGATGATATTATGGTGGTCGACGACTGCCTTCTCCGTAAACCATCAGGCCCCTACATT
104 GTGGAGCAATCGATTGAAGCTGATCCAATCGATGAGAATACGTGCAGAATGACACGGTGC
105 TTCGATACACCGGCTGCACTGGCATTAATTGATAATATCAAGAGAAAACATCATATGTGT
106 GTTCCACTTGTTTGGAGAGTTAAACAAACGAAATGTATGGAGGAGAACGAAATTCTGAAT
107 GAAGAAGCCCGTCAACAAATGTTCCGTGCAACAATGACATACAGCCGTGTACCAAAAGGA
108 GAAATTGCAAATTGGAAGAAAGATATGATGGCGTTGAAGGGAAGATTCGAGAGATTTACT
109 CCTGAACTAGATACTACTGCAACAAATGGCAATCGATCTGGAAAAGTCAGGATAAATTAT
110 GGTTGGAGTCCTGAGGAAAAGAAGAATGCTATTAGATGTTTCCACTGGTACAAGGACAAT
111 TTCGAGTTGATCGCCGAGTTGATGGCCACAAAAACTGTGGAACAAATCAAAAAGTTCTAT
112 ATGGACAATGAAAAGCTAATTTTGGAGTCAATCGACACGTATCGCGCCGAGCTCAAGTCA
113 AAACTCGGCAAATAA
114 >Y74C9A.4c cds chromosome:WBcel235:I:17483:26643:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide;Acc:NP_001293207]
115 ATGGAGGAAGATGATCCAGAGGAGCAGGCGGAACAAGAAGAAGAAACCAGCAGAATGGCT
116 CGTCCTATAAGATCCATGAGAAAACGCGAAACAACGTCTGGGGAATCAATGGGCGATGAG
117 GATGAAGATTTGGAGGATGAAGAGGACGAAGATGAAGAAGCTGAAGCTCGTGAGCATCAT
118 GAAAGTGGTGCTCATGACACATCTTTCTCAAATCCACTTTCCAACGTCGACAATCTAATC
119 CACGTGGGAACCGAATATCAGGCGATTATACAGCCAACTGCAGAGCAATTGGAAAAAGAA
120 CCGTGCAGAGATCAACAAATTTGGGCGTTTCCAGACGAAATGAACGAGAATCGGCTTACA
121 GAATACATTTCAGAAGCTACTGGACGATATCAATTACCTATAGATAGGGCTCTGTTCATT
122 CTGAACAAACAGTCAAATGATTTCGACGCTGCGATGGTTCAAGCGATGAGAAGAAAAGAA
123 ATTCATGATGATTGGACGGCAGAAGAAATTAGTCTTTTCTCCACTTGCTTCTTTCATTTC
124 GGAAAACGGTTCAAGAAGATTCATGCGGCTATGCCCCAACGCTCGCTTTCTTCCATTATC
125 CAATACTATTACAACACGAAAAAAGTGCAAAACTATAAAACAATGATTAATGTGCATTTG
126 AATGAAACCGACACTTATGATGAACTATTCAAAGAGGTCAATCATTTGGAGAGGGTTCCG
127 TCGGGATATTGTGAGAATTGCAATGCAAAAAGTGATCTGTTGATTCTAAATCGTGTAATG
128 TCGCGTCACGAATGTAAACCGTGTATCCTTTATTTCCGTTTGATGCGTGTTCCACGTCCG
129 GCAAGCCTCCGTGCACTGACAAAACGACGGCAACGAGTTTTATGTCCAGAATACATGAAA
130 ATTTATGTATACGGATATCTTGAGCTCATGGAGCCAGCCAACGGAAAAGCGATCAAACGG
131 CTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGATATTATGGTGGTCGACGACTGCCTT
132 CTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAATCGATTGAAGCTGATCCAATCGAT
133 GAGAATACGTGCAGAATGACACGGTGCTTCGATACACCGGCTGCACTGGCATTAATTGAT
134 AATATCAAGAGAAAACATCATATGTGTGTTCCACTTGTTTGGAGAGTTAAACAAACGAAA
135 TGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCCCGTCAACAAATGTTCCGTGCAACA
136 ATGACATACAGCCGTGTACCAAAAGGAGAAATTGCAAATTGGAAGAAAGATATGATGGCG
137 TTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTAGATACTACTGCAACAAATGGCAAT
138 CGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGTCCTGAGGAAAAGAAGAATGCTATT
139 AGATGTTTCCACTGGTACAAGGACAATTTCGAGTTGATCGCCGAGTTGATGGCCACAAAA
140 ACTGTGGAACAAATCAAAAAGTTCTATATGGACAATGAAAAGCTAATTTTGGAGTCAATC
141 GACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGCAAATAA
142 >Y74C9A.4d cds chromosome:WBcel235:I:17483:24796:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide;Acc:NP_001293207]
143 ATGTCGCGTCACGAATGTAAACCGTGTATCCTTTATTTCCGTTTGATGCGTGTTCCACGT
144 CCGGCAAGCCTCCGTGCACTGACAAAACGACGGCAACGAGTTTTATGTCCAGAATACATG
145 AAAATTTATGTATACGGATATCTTGAGCTCATGGAGCCAGCCAACGGAAAAGCGATCAAA
146 CGGCTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGATATTATGGTGGTCGACGACTGC
147 CTTCTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAATCGATTGAAGCTGATCCAATC
148 GATGAGAATACGTGCAGAATGACACGGTGCTTCGATACACCGGCTGCACTGGCATTAATT
149 GATAATATCAAGAGAAAACATCATATGTGTGTTCCACTTGTTTGGAGAGTTAAACAAACG
150 AAATGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCCCGTCAACAAATGTTCCGTGCA
151 ACAATGACATACAGCCGTGTACCAAAAGGAGAAATTGCAAATTGGAAGAAAGATATGATG
152 GCGTTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTAGATACTACTGCAACAAATGGC
153 AATCGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGTCCTGAGGAAAAGAAGAATGCT
154 ATTAGATGTTTCCACTGGTACAAGGACAATTTCGAGTTGATCGCCGAGTTGATGGCCACA
155 AAAACTGTGGAACAAATCAAAAAGTTCTATATGGACAATGAAAAGCTAATTTTGGAGTCA
156 ATCGACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGCAAATAA