Mercurial > repos > earlhaminst > gstf_preparation

comparison test-data/Mus_pahari.PAHARI_EIJ_v1.1.cds.all.shortened.fa @ 10:e8e75a79de59 draft

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"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit 9c8611fee927883f50bc6955771aa69df1ce8457"
author earlhaminst
date Thu, 31 Oct 2019 08:16:51 -0400
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9:f4acbfe8d6fe 10:e8e75a79de59
1 >MGP_PahariEiJ_T0009933.1 cds chromosome:PAHARI_EIJ_v1.1:13:62596741:62626623:1 gene:MGP_PahariEiJ_G0008413.1 gene_biotype:polymorphic_pseudogene transcript_biotype:protein_coding gene_symbol:Atp10d description:ATPase, class V, type 10D [Source:MGI Symbol;Acc:MGI:2450125]
2 AAGACAAATGGCTGGCTTGGAAGCGTAACTCTCACCGCCCTTTGGATCCCTGCTCGCTTC
3 TCTTTTGGCACTTTGGGATCCGAGGTAACCATGCGGTGATGAGCGGCCCGGGAGGGACAG
4 ATCACCTGAACCAGCCGGGTCTCCCTGCGTCTTGGACATGACTGAGCTTCTGCAGTGGGC
5 CAGACATCACTGGCGTCGGCTGAGCCATGGGAGAACCCAGGGTGAAGATGAGAGGCCGTA
6 CAACTACGCCTCCCTGCTGGCCTGTGGGGGCAAGTCCCCCCGGACCCCCAGGCCTGCAGG
7 AAAGCACCGTGTCGTTATTCCTCACCTTCAGTGCTTCAGGGATGAGTACGAGAGGTTTTC
8 TGGAACCTACGTGAATAACCGGATACGGACGACCAAGTACACACTCCTGAACTTTGTGCC
9 AAGGAACTTATTTGAACAGTTTCACAGGGCTGCCAATTTATATTTCCTGTTCCTCGTGGT
10 CCTGAACTGGGTGCCTTTGGTAGAAGCCTTCCAAAAGGAAATCACCATGCTGCCTCTGGT
11 GGTGGTCCTCACAATTATTGCAATTAAAGATGGCTTGGAAGACTACCGGAAGTACAAAAT
12 TGACAAGCAGATCAACAACTTAATAACCAAGGTTTACAGTAGG
13 >MGP_PahariEiJ_T0009934.1 cds chromosome:PAHARI_EIJ_v1.1:13:62596741:62686932:1 gene:MGP_PahariEiJ_G0008413.1 gene_biotype:polymorphic_pseudogene transcript_biotype:polymorphic_pseudogene gene_symbol:Atp10d description:ATPase, class V, type 10D [Source:MGI Symbol;Acc:MGI:2450125]
14 AAGACAAATGGCTGGCTTGGAAGCGTAACTCTCACCGCCCTTTGGATCCCTGCTCGCTTC
15 TCTTTTGGCACTTTGGGATCCGAGGTAACCATGCGGTGATGAGCGGCCCGGGAGGGACAG
16 ATCACCTGAACCAGCCGGGTCTCCCTGCGTCTTGGACATGACTGAGCTTCTGCAGTGGGC
17 CAGACATCACTGGCGTCGGCTGAGCCATGGGAGAACCCAGGGTGAAGATGAGAGGCCGTA
18 CAACTACGCCTCCCTGCTGGCCTGTGGGGGCAAGTCCCCCCGGACCCCCAGGCCTGCAGG
19 AAAGCACCGTGTCGTTATTCCTCACCTTCAGTGCTTCAGGGATGAGTACGAGAGGTTTTC
20 TGGAACCTACGTGAATAACCGGATACGGACGACCAAGTACACACTCCTGAACTTTGTGCC
21 AAGGAACTTATTTGAACAGTTTCACAGGGCTGCCAATTTATATTTCCTGTTCCTCGTGGT
22 CCTGAACTGGGTGCCTTTGGTAGAAGCCTTCCAAAAGGAAATCACCATGCTGCCTCTGGT
23 GGTGGTCCTCACAATTATTGCAATTAAAGATGGCTTGGAAGACTACCGGAAGTACAAAAT
24 TGACAAGCAGATCAACAACTTAATAACCAAGGTTTACAGTAGGACTCTGAAGTTGATCCT
25 GAGAAGTTCTCCAGTAGGATAGAATGTGAAAGCCCAAACAATGACCTCAGCAGATTCCGA
26 GGTTTCCTGGAACATGCCAATAAAGACCGTGTGGGCCTCAGCAAAGAGAATTTATTGCTC
27 CGCGGGTGCACCATCAGAAACACAGAGGCTGTGGTGGGCATTGTGGTCTATGCAGGTCAT
28 GAAACCAAAGCAATGCTGAACAACAGTGGGCCACGGTATAAGCGCAGTAAGTTAGAGAGA
29 AGAGCAAATACAGACGTCCTCTGGTGTGTCCTGCTTCTGATCGTCATGTGCTTAACTGGT
30 GCACTGGGTCACGGCATATGGCTGAGCAGGTATGAGAACATGCTCTTTTTTAACATCCCT
31 GAGCCGGACGGACGTGTCCTATCACCTGTGCTGACTGGGTTCTATGTGTTCTGGACCATG
32 ATCATCTTGCTGCAGGTCCTGATCCCCATTTCTCTCTACGTGTCCATTGAGATCGTGAAG
33 CTGGGACAGATCTATTTCATCCAGAGCGATGTAGATTTCTACAACGAGAAAATGGATTCG
34 ACCATTCAGTGCCGAGCCCTAAACATCACTGAGGACCTTGGGCAGATTCAATACCTCTTT
35 TCTGATAAGACAGGAACCCTCACAGAGAATAAGATGGTGTTTCGGAGGTGCAGTGTAGCA
36 GGGTTTGACTACTGCCATGAAGAAAACGCCAGGAGGCTCGAGTCCTATCAGGAAGCTGTC
37 TCTGAAGAGGAGGAACGCGCAGACACTCTCGGCGGCTCCCTCAGCAACGTGGCGAGACCC
38 AGAGCCCAGGGCTGCAGGACAGTTCACAGTGGGCTTCCGGGAAAACCCCCGGCTCACCTC
39 TCCGGGAGCACCTCTGCTGTAGGAGACGCAGAAGGATCCGGGGAAGTGCCTCATTCCAGA
40 CAGGCTGCCTTCAGTAGTCCCATGGAAACAGACGTGGTACCAGATACCAGACTTTTAGAC
41 AAATTTAGCCAGATTACCCCTCAGCTGCTCACTGGACTGGATGGGACCTTGCAGAGCTCA
42 TCACTGGAGACCTTGTACATCATGGACTTCTTTATTGCACTGGCAATTTGCAACACGGTG
43 GTGGTTTCTGCCCCAAACCAACCTCGGCAAAAGATTGGGCTCTCCTCACTGGGTGGAATG
44 CCCATCAAGTCCTTGGACGAGATTAAAAACATCTTCCAGAAATTGTCTGTCCGGAGATCA
45 AGTTCACCATCCCTTGCCAGCGGGAAGGATTCATCCTCTGGGACTCCCTGTGCCTTTGTG
46 AGCAGAATCTCTTTCTTTAGTCGACCAAAACTGTCACCTCCTATGGAGGACGAGTCTTCC
47 CAAATGGATGAAATCCCCCAGGCCAGTAACTCAGCTTGCTGTACAGAAACGGAGGCACAA
48 AACAGTGCCTTAGGACTCAGCGTCGGCTCCGCGGAAGCCCTAAATGGACCACCGCCCTTG
49 GCTTCCAACCTGTGTTATGAGGCGGAGAGTCCAGATGAAGCAGCCTTGGTGTATGCCGCC
50 AGAGCTTATCATTGCACTTTACAGTCTCGGACCCCAGAGCAGGTCATGGTGGAGTTTGCA
51 GCTTTGGGCTCATTAACATTTCAACTCCTACACATCCTGCCCTTTGACTCAGTAAGGAAA
52 AGAATGTCGGTGGTGGTCCGGCACCCTCTTTCCAAACAAGTCGTGGTGTATACAAAAGGC
53 GCTGATTCCGTGATCATGGAGCTGCTGTCTATGGCTTCCTCGGATGGAACAAATCTGGAA
54 GAACAACAGATGATAATAAGGGAGAGAACGCAGAGGCACCTGGACGAGTATGCCAGACGA
55 GGGCTGCGCACTCTGTGTGTTGCAAAGAAGGTCATGAGTGACACGGAATATGCAGAGTGG
56 CTGAGGAATCACTTCCTAGCTGAAACCAGCATTGACAACAGGGAGGAGCTGCTAGTTGAG
57 TCTGCCATGAGACTAGAAAACAAACTCACGTTACTTGGTGCTACTGGCATTGAAGATCGT
58 CTGCAGGAGGGGGTCCCTGAGTCTATAGAAGCCCTTCACCAAGCTGGCATCAAGATCTGG
59 ATGCTGACAGGGGACAAGCAGGAGACAGCTGTCAACATAGCTTATGCATGCAGACTCCTG
60 GAACCAGATGACAAGCTCTTCATCCTCAATACACAAAGTGAGGATGCCTGTGGGATGCTG
61 ATGAGTGCAATTTTGGAAGAACTTCAGAAGAGAGCTCAGGTGTCTCCGGAGCTGGCATCA
62 CCAAGAAAGAACTTTCCTCAGCCCCCTGACCCTCAGGGCCAGGGACGTGCGGGACTTGTT
63 ATCACTGGGAAGAGCCTGGAGTTTGCCCTGCAGGAGAGTCTACAAAGACAGTTCCTTGAG
64 CTGACTGCATGGTGCCAAGCTGTGATCTGCTGCCGAGCCACCCCCCTTCAAAAGAGTGAG
65 GTGGTGAAATTGGTTCGAAACCATCTCCATGTGATGACCCTAGCCATTGGTGACGGTGCC
66 AATGATGTTAGCATGATACAAGTGGCTGACATTGGGATCGGTGTCTCAGGTCAAGAAGGC
67 ATGCAGGCTGTGATGGCCAGTGACTTCGCCATCTCTCAGTTCAGACATCTCAGCAAGCTT
68 CTCCTCGTGCACGGGCACTGGTGTTACACCCGGCTCTCCAACATGATTCTCTATTTTTTC
69 TACAAGAATGTGGCCTATGTGAATCTCCTTTTCTGGTACCAGTTCTTTTGTGGGTTTTCA
70 GGAACATCGATGACTGACTACTGGGTGCTGATCTTCTTCAACCTCCTCTTCACATCTGTC
71 CCCCCCATCATTTATGGCGTTTTGGAGAAAGATGTGTCAGCAGAGACCCTCCTGCAGCTG
72 CCTGAACTTTACCGGAGTGGTCAGCGATCAGAGGAATACTTGCCCGTCACTTTCTGGATC
73 ACCTTGTTGGATGCCTTTTATCAAAGCCTGGTCTGCTTCTTTGTGCCTTACTTTACCTAC
74 CAGGGCTCTGACATTGACATCTTTACCTTTGGGAATCCCCTGAACACGGCGGCTCTGTTC
75 ATCATTCTCCTCCACCTGGTGATCGAAAGCAAGAGTTTGACTTGGATCCACATGCTGGTC
76 ATTGTTGGGAGCATCTTGTCCTACTTTTTCTTTGCCTTGGCTTTTGGAGCCTTATGTGTC
77 ACTTGCAACCCACCCTCCAACCCCTACGGGATCATGCAGAAGCACATGCTAGACCCTGTG
78 TTCTACTTAGTTTGTGTTCTTACAACCTTCGTAGCACTCCTGCCCAGGTTTGCCTACCGA
79 GTTCTTCAGGGATCCATGTTTCCATCTCCAGTTCTCAGAGCCAAGTACTTTGACCGACTA
80 CCTCCAGAGGAGAGAGCTGAAGCTCTCAAGAGGTGGAGAGGGACTGCAAAGATCAATCAC
81 GTGGCATCTCAGCATGCCAGCCAATCAGCTGCTAAGTCAGGAAGACCCACGCCTGGGTCT
82 TCTGCTGTCCTTGCAATGAAGACAGCAACAGTGCGTACTGTTGAGCAGAGCACATGTGAA
83 ACTGCGCTAGACCATGGCTGCTCTGAACCTGGGGCCTCCAGGACGACTGGACCCTCAGCA
84 AGT
85 >MGP_PahariEiJ_T0009938.1 cds chromosome:PAHARI_EIJ_v1.1:13:62671962:62686918:1 gene:MGP_PahariEiJ_G0008413.1 gene_biotype:polymorphic_pseudogene transcript_biotype:protein_coding gene_symbol:Atp10d description:ATPase, class V, type 10D [Source:MGI Symbol;Acc:MGI:2450125]
86 ATGACTGACTACTGGGTGCTGATCTTCTTCAACCTCCTCTTCACATCTGTCCCCCCCATC
87 ATTTATGGCGTTTTGGAGAAAGATGTGTCAGCAGAGACCCTCCTGCAGCTGCCTGAACTT
88 TACCGGAGTGGTCAGCGATCAGAGGAATACTTGCCCGTCACTTTCTGGATCACCTTGTTG
89 GATGCCTTTTATCAAAGCCTGGTCTGCTTCTTTGTGCCTTACTTTACCTACCAGGGCTCT
90 GACATTGACATCTTTACCTTTGGGAATCCCCTGAACACGGCGGCTCTGTTCATCATTCTC
91 CTCCACCTGGTGATCGAAAGCAAGAGTTTGACTTGGATCCACATGCTGGTCATTGTTGGG
92 AGCATCTTGTCCTACTTTTTCTTTGCCTTGGCTTTTGGAGCCTTATGTGTCACTTGCAAC
93 CCACCCTCCAACCCCTACGGGATCATGCAGAAGCACATGCTAGACCCTGTGTTCTACTTA
94 GTTTGTGTTCTTACAACCTTCGTAGCACTCCTGCCCAGGTTTGCCTACCGAGTTCTTCAG
95 GGATCCATGTTTCCATCTCCAGTTCTCAGAGCCAAGTACTTTGACCGACTACCTCCAGAG
96 GAGAGAGCTGAAGCTCTCAAGAGGTGGAGAGGGACTGCAAAGATCAATCACGTGGCATCT
97 CAGCATGCCAGCCAATCAGCTGCTAAGTCAGGAAGACCCACGCCTGGGTCTTCTGCTGTC
98 CTTGCAATGAAGACAGCAACAGTGCGTACTGTTGAGCAGAGCACATGTGAAACTGCGCTA
99 GACCATGGCTGCTCTGAACCTGGGGCCTCCAGGACGACTGGACCCTCAGCAAGT