Mercurial > repos > earlhaminst > lotus2
changeset 7:692832801d70 draft
"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/lotus2 commit 81334bedc488edc36581c015b5a4c06926ec236c"
| author | earlhaminst |
|---|---|
| date | Sun, 06 Jun 2021 17:55:32 +0000 |
| parents | fc78d02657a9 |
| children | 0fddee8b1f7e |
| files | lotus2.xml |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/lotus2.xml Sat Jun 05 09:49:25 2021 +0000 +++ b/lotus2.xml Sun Jun 06 17:55:32 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="lotus2" name="LotuS2" version="@VERSION@" profile="20.01"> +<tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy1" profile="20.01"> <description>fast OTU processing pipeline</description> <macros> <token name="@VERSION@">2.07</token> @@ -179,7 +179,7 @@ ; EXIT_VALUE=\$? ; -tar -cvzf output.tar.gz output/ +zip -8 -r -v output.zip output/ && exit \$EXIT_VALUE ]]></command> @@ -329,13 +329,12 @@ </inputs> <outputs> + <data name="outputs" format="zip" label="${tool.name} on ${on_string}: Complete LotuS2 output" from_work_dir="output.zip" /> <data name="otu" format="tabular" label="${tool.name} on ${on_string}: OTU abundance matrix" from_work_dir="output/OTU.txt" /> - <data name="otu_biom" format="biom1" label="${tool.name} on ${on_string}: biom-formatted OTU abundance matrix" from_work_dir="output/OTU.biom" /> <data name="otu_fna" format="fasta" label="${tool.name} on ${on_string}: FASTA-formatted extended OTU seed sequences" from_work_dir="output/OTU.fna" /> <data name="OTUphylo_nwk" format="newick" label="${tool.name} on ${on_string}: Newick-formatted phylogenetic tree between sequences" from_work_dir="output/OTUphylo.nwk" /> <data name="mapping" format="tabular" label="${tool.name} on ${on_string}: mapping file" from_work_dir="output/primary/in.map" /> <data name="runlog" format="txt" label="${tool.name} on ${on_string}: main log file" from_work_dir="output/LotuSLogS/LotuS_run.log" /> - <data name="outputs" format="tar" label="${tool.name} on ${on_string}: All output files" from_work_dir="output.tar.gz" /> </outputs> <tests>