annotate ct_macros.xml @ 1:dc68e75e8ae3 draft

"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
author ebi-gxa
date Fri, 24 Apr 2020 11:19:44 -0400
parents 7c7d1ef36bf6
children 44b6219cba2d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
1 <macros>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
2 <token name="@TOOL_VERSION@">1.0.0</token>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
3 <token name="@HELP@">More information can be found at https://github.com/ebi-gene-expression-group/cell-types-analysis</token>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
4 <token name="@PROFILE@">18.01</token>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
5 <xml name="requirements">
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
6 <requirements>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
7 <requirement type="package" version="0.0.8">cell-types-analysis</requirement>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
8 <yield/>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
9 </requirements>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
10 </xml>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
11 <xml name="version">
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
12 <version_command><![CDATA[
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
13 conda list | grep cell-types-analysis | egrep -o [0-9]\.[0-9]\.[0-9]
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
14 ]]></version_command>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
15 </xml>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
16 <token name="@VERSION_HISTORY@"><![CDATA[
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
17 **Version history**
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
18 0.0.5+galaxy0: Initial contribution. Andrey Solovyev, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
19 ]]></token>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
20 <xml name="citations">
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
21 <citations>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
22 <citation type="bibtex">
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
23 @misc{github-cell-types-analysis.git,
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
24 author = {Andrey Solovyev, EBI Gene Expression Team},
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
25 year = {2020},
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
26 title = {Suite of scripts for analysis of scRNA-seq cell type classification tool outputs},
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
27 publisher = {GitHub},
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
28 journal = {GitHub repository},
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
29 url = {https://github.com/ebi-gene-expression-group/cell-types-analysis.git},
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
30 }
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
31 </citation>
1
dc68e75e8ae3 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
ebi-gxa
parents: 0
diff changeset
32 <citation type="doi">10.1101/2020.04.08.032698</citation>
0
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
33 <yield />
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
34 </citations>
7c7d1ef36bf6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 941a94360593f8dfb7804834f29fb2642ddd53a2"
ebi-gxa
parents:
diff changeset
35 </xml>
1
dc68e75e8ae3 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
ebi-gxa
parents: 0
diff changeset
36 </macros>