Mercurial > repos > ebi-gxa > scanpy_find_variable_genes

comparison scanpy-find-variable-genes.xml @ 27:2bc42a6f092b draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:27 +0000
parents 273faaa2bd69
children 64dd8bb151e1
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26:273faaa2bd69 27:2bc42a6f092b
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_find_variable_genes" name="Scanpy FindVariableGenes" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_find_variable_genes" name="Scanpy FindVariableGenes" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>based on normalised dispersion of expression</description> 3 <description>based on normalised dispersion of expression</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
69 <param name="n_bin" value="20"/> 69 <param name="n_bin" value="20"/>
70 <param name="min_mean" value="0.0125"/> 70 <param name="min_mean" value="0.0125"/>
71 <param name="max_mean" value="3"/> 71 <param name="max_mean" value="3"/>
72 <param name="min_disp" value="0.5"/> 72 <param name="min_disp" value="0.5"/>
73 <param name="max_disp" value="1e9"/> 73 <param name="max_disp" value="1e9"/>
74 <output name="output_h5" file="find_variable_genes.h5" ftype="h5" compare="sim_size"/> 74 <output name="output_h5" ftype="h5">
75 <assert_contents>
76 <has_h5_keys keys="uns/hvg"/>
77 </assert_contents>
78 </output>
75 </test> 79 </test>
76 </tests> 80 </tests>
77 81
78 <help><![CDATA[ 82 <help><![CDATA[
79 ============================================================== 83 ==============================================================