Mercurial > repos > ebi-gxa > scanpy_find_variable_genes

diff scanpy-find-variable-genes.xml @ 27:2bc42a6f092b draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:42:27 +0000
parents 273faaa2bd69
children 64dd8bb151e1
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line diff
--- a/scanpy-find-variable-genes.xml	Fri Oct 13 14:07:47 2023 +0000
+++ b/scanpy-find-variable-genes.xml	Tue Feb 27 16:42:27 2024 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_find_variable_genes" name="Scanpy FindVariableGenes" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
+<tool id="scanpy_find_variable_genes" name="Scanpy FindVariableGenes" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>based on normalised dispersion of expression</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -71,7 +71,11 @@
       <param name="max_mean" value="3"/>
       <param name="min_disp" value="0.5"/>
       <param name="max_disp" value="1e9"/>
-      <output name="output_h5" file="find_variable_genes.h5" ftype="h5" compare="sim_size"/>
+      <output name="output_h5" ftype="h5">
+         <assert_contents>
+           <has_h5_keys keys="uns/hvg"/>
+         </assert_contents>
+      </output>
     </test>
   </tests>