Mercurial > repos > ebi-gxa > scanpy_integrate_mnn

comparison scanpy-integrate-mnn.xml @ 6:5bb009f95e03 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ebe77c8718ec65277f4dc0d71fa5f4c5677df62d-dirty"
author ebi-gxa
date Wed, 05 May 2021 12:11:10 +0000
parents b202e078a83f
children 3ba9371733a2
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5:b202e078a83f 6:5bb009f95e03
40 #end if 40 #end if
41 #if $settings.svd_mode 41 #if $settings.svd_mode
42 --svd-mode '${settings.svd_mode}' 42 --svd-mode '${settings.svd_mode}'
43 #end if 43 #end if
44 #end if 44 #end if
45 @SAVE_MATRIX_OPTS@
45 #end if 46 #end if
46 @INPUT_OPTS@ 47 @INPUT_OPTS@
47 @OUTPUT_OPTS@ 48 @OUTPUT_OPTS@
48 #else 49 #else
49 echo "No batch variables passed, simply passing original input as output unchanged." && cp '${input_obj_file}' output.h5 50 echo "No batch variables passed, simply passing original input as output unchanged." && cp '${input_obj_file}' output.h5
51 ]]></command> 52 ]]></command>
52 53
53 <inputs> 54 <inputs>
54 <expand macro="input_object_params"/> 55 <expand macro="input_object_params"/>
55 <expand macro="output_object_params"/> 56 <expand macro="output_object_params"/>
57 <expand macro="save_matrix_params"/>
56 <param name="batch_key" type="text" argument="--batch-key" label="The name of the column in adata.obs that differentiates among experiments/batches."> 58 <param name="batch_key" type="text" argument="--batch-key" label="The name of the column in adata.obs that differentiates among experiments/batches.">
57 <sanitizer> 59 <sanitizer>
58 <valid initial="string.printable"/> 60 <valid initial="string.printable"/>
59 </sanitizer> 61 </sanitizer>
60 </param> 62 </param>