Mercurial > repos > ebi-gxa > scanpy_plot_trajectory

comparison scanpy-plot-trajectory.xml @ 26:cb1992d1804b draft default tip

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:43:29 +0000
parents 9d746af31fe8
children
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25:9d746af31fe8 26:cb1992d1804b
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@"> 2 <tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
3 <description>visualise cell trajectories</description> 3 <description>visualise cell trajectories</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
98 <tests> 98 <tests>
99 <test> 99 <test>
100 <param name="input_obj_file" value="paga.h5"/> 100 <param name="input_obj_file" value="paga.h5"/>
101 <param name="input_format" value="anndata"/> 101 <param name="input_format" value="anndata"/>
102 <param name="output_format" value="anndata"/> 102 <param name="output_format" value="anndata"/>
103 <output name="output_h5" file="plotted_paga.h5" ftype="h5" compare="sim_size"/> 103 <output name="output_h5" ftype="h5">
104 <output name="output_png" file="paga_compare.png" ftype="png" compare="sim_size"/> 104 <assert_contents>
105 <has_h5_keys keys="uns/louvain_colors"/>
106 </assert_contents>
107 </output>
108 <output name="output_png" file="paga_compare.png" ftype="png" compare="sim_size" delta_frac="0.1"/>
105 </test> 109 </test>
106 </tests> 110 </tests>
107 111
108 <help><![CDATA[ 112 <help><![CDATA[
109 =============================================================== 113 ===============================================================