Mercurial > repos > ebi-gxa > scanpy_plot_trajectory

diff scanpy-plot-trajectory.xml @ 26:cb1992d1804b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit ee197a80b2d591c393e1662854bc119b2ecab11e-dirty
author ebi-gxa
date Tue, 27 Feb 2024 16:43:29 +0000
parents 9d746af31fe8
children
line wrap: on
line diff
--- a/scanpy-plot-trajectory.xml	Fri Oct 13 14:09:14 2023 +0000
+++ b/scanpy-plot-trajectory.xml	Tue Feb 27 16:43:29 2024 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy93" profile="@PROFILE@">
+<tool id="scanpy_plot_trajectory" name="Scanpy PlotTrajectory" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
   <description>visualise cell trajectories</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -100,8 +100,12 @@
       <param name="input_obj_file" value="paga.h5"/>
       <param name="input_format" value="anndata"/>
       <param name="output_format" value="anndata"/>
-      <output name="output_h5" file="plotted_paga.h5" ftype="h5" compare="sim_size"/>
-      <output name="output_png" file="paga_compare.png" ftype="png" compare="sim_size"/>
+      <output name="output_h5" ftype="h5">
+        <assert_contents>
+          <has_h5_keys keys="uns/louvain_colors"/>
+        </assert_contents>
+      </output>
+      <output name="output_png" file="paga_compare.png" ftype="png" compare="sim_size" delta_frac="0.1"/>
     </test>
   </tests>