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comparison scanpy-run-diffmap.xml @ 24:e2ca1846080f draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 6c9d530aa653101e9e21804393ec11f38cddf027-dirty
author ebi-gxa
date Thu, 16 Feb 2023 13:29:55 +0000
parents 26e1a99e3c0f
children afec1d52b87d
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23:7abe27a3866e 24:e2ca1846080f
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_run_diffmap" name="Scanpy DiffusionMap" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> 2 <tool id="scanpy_run_diffmap" name="Scanpy DiffusionMap" version="@TOOL_VERSION@+galaxy9" profile="@PROFILE@">
3 <description>calculate diffusion components</description> 3 <description>calculate diffusion components</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
45 <tests> 45 <tests>
46 <test> 46 <test>
47 <param name="input_obj_file" value="find_cluster.h5"/> 47 <param name="input_obj_file" value="find_cluster.h5"/>
48 <param name="input_format" value="anndata"/> 48 <param name="input_format" value="anndata"/>
49 <param name="output_format" value="anndata"/> 49 <param name="output_format" value="anndata"/>
50 <param name="n_dcs" value="10"/>
51 <param name="root_attr" value="louvain"/>
52 <param name="root_value" value="1"/>
53 <param name="use_graph" value="neighbors"/> 50 <param name="use_graph" value="neighbors"/>
54 <output name="output_h5" file="diffmap.h5" ftype="h5" compare="sim_size"/> 51 <output name="output_h5" file="diffmap.h5" ftype="h5" compare="sim_size"/>
55 </test> 52 </test>
56 </tests> 53 </tests>
57 54