Mercurial > repos > ebi-gxa > scanpy_run_fdg

comparison scanpy-run-fdg.xml @ 16:a6190ae4fe16 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 045c1232e9d8cdc7bc084e089900e9bd17fc47e1-dirty"
author ebi-gxa
date Tue, 23 Mar 2021 16:32:40 +0000
parents dd27b39c5c12
children 14866357fbec
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15:5d2c8acd2ae4 16:a6190ae4fe16
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> 2 <tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
3 <description>visualise cell clusters using force-directed graph</description> 3 <description>visualise cell clusters using force-directed graph</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
45 <when value="true"/> 45 <when value="true"/>
46 <when value="false"> 46 <when value="false">
47 <param name="neighbors_key" argument="--neighbors-key" value="neighbors" type="text" 47 <param name="neighbors_key" argument="--neighbors-key" value="neighbors" type="text"
48 label="Name of the slot that holds the KNN graph"/> 48 label="Name of the slot that holds the KNN graph"/>
49 <param name="obsp" type="boolean" checked="false" label="Use .obsp[obsp] as adjacency" help="You can’t specify both obsp and neighbors-key at the same time."/> 49 <param name="obsp" type="boolean" checked="false" label="Use .obsp[obsp] as adjacency" help="You can’t specify both obsp and neighbors-key at the same time."/>
50 <param name="init_pos" argument="--init-pos" type="text" label="Method to initialise embedding, any key for adata.obsm or choose from the preset methods"> 50 <param name="init_pos" argument="--init-pos" type="text" label="Method to initialise embedding, any key for adata.obsm or choose from the preset methods"/>
51 <option value="paga">paga</option>
52 </param>
53 <param name="layout" argument="--layout" type="select" label="Graph layout"> 51 <param name="layout" argument="--layout" type="select" label="Graph layout">
54 <option value="fa">fa</option> 52 <option value="fa">fa</option>
55 <option value="fr" selected="true">fr</option> 53 <option value="fr" selected="true">fr</option>
56 <option value="grid_fr">grid fr</option> 54 <option value="grid_fr">grid fr</option>
57 <option value="kk">kk</option> 55 <option value="kk">kk</option>