Mercurial > repos > ebi-gxa > scanpy_run_fdg

diff scanpy-run-fdg.xml @ 16:a6190ae4fe16 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 045c1232e9d8cdc7bc084e089900e9bd17fc47e1-dirty"
author ebi-gxa
date Tue, 23 Mar 2021 16:32:40 +0000
parents dd27b39c5c12
children 14866357fbec
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--- a/scanpy-run-fdg.xml	Wed Nov 25 16:21:23 2020 +0000
+++ b/scanpy-run-fdg.xml	Tue Mar 23 16:32:40 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+<tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
   <description>visualise cell clusters using force-directed graph</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -47,9 +47,7 @@
         <param name="neighbors_key" argument="--neighbors-key" value="neighbors" type="text"
                label="Name of the slot that holds the KNN graph"/>
         <param name="obsp" type="boolean" checked="false" label="Use .obsp[obsp] as adjacency" help="You can’t specify both obsp and neighbors-key at the same time."/>
-        <param name="init_pos" argument="--init-pos" type="text" label="Method to initialise embedding, any key for adata.obsm or choose from the preset methods">
-          <option value="paga">paga</option>
-        </param>
+        <param name="init_pos" argument="--init-pos" type="text" label="Method to initialise embedding, any key for adata.obsm or choose from the preset methods"/>
         <param name="layout" argument="--layout" type="select" label="Graph layout">
           <option value="fa">fa</option>
           <option value="fr" selected="true">fr</option>