Mercurial > repos > ebi-gxa > scanpy_run_fdg

diff scanpy-run-fdg.xml @ 4:5fb11df8f217 draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:38:32 -0500
parents 96af0059b974
children 6f84e4382fb2
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--- a/scanpy-run-fdg.xml	Wed Nov 20 05:16:04 2019 -0500
+++ b/scanpy-run-fdg.xml	Mon Nov 25 14:38:32 2019 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy0">
+<tool id="scanpy_run_fdg" name="Scanpy RunFDG" version="@TOOL_VERSION@+galaxy6">
   <description>visualise cell clusters using force-directed graph</description>
   <macros>
     <import>scanpy_macros2.xml</import>
@@ -52,7 +52,7 @@
   </inputs>
 
   <outputs>
-    <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: FDG object"/>
+    <expand macro="output_data_obj" description="FDG object"/>
     <data name="output_embed" format="csv" from_work_dir="embeddings.csv" label="${tool.name} on ${on_string}: FDG embeddings">
       <filter>embeddings</filter>
     </data>