Mercurial > repos > ebi-gxa > scanpy_run_pca

comparison scanpy-run-pca.xml @ 5:242cf7e1fd0c draft

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planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author ebi-gxa
date Mon, 25 Nov 2019 14:36:39 -0500
parents 7798c318e7d7
children c9fb2c0598cd
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4:c990e40fbd46 5:242cf7e1fd0c
1 <?xml version="1.0" encoding="utf-8"?> 1 <?xml version="1.0" encoding="utf-8"?>
2 <tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy0"> 2 <tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy6">
3 <description>for dimensionality reduction</description> 3 <description>for dimensionality reduction</description>
4 <macros> 4 <macros>
5 <import>scanpy_macros2.xml</import> 5 <import>scanpy_macros2.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
53 </param> 53 </param>
54 54
55 </inputs> 55 </inputs>
56 56
57 <outputs> 57 <outputs>
58 <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: PCA object"/> 58 <expand macro="output_data_obj" description="PCA object"/>
59 <data name="output_embed" format="tsv" from_work_dir="embeddings.tsv" label="${tool.name} on ${on_string}: PCA embeddings"> 59 <data name="output_embed" format="tsv" from_work_dir="embeddings.tsv" label="${tool.name} on ${on_string}: PCA embeddings">
60 <filter>extra_outputs and 'embeddings' in extra_outputs.split(',')</filter> 60 <filter>extra_outputs and 'embeddings' in extra_outputs.split(',')</filter>
61 </data> 61 </data>
62 </outputs> 62 </outputs>
63 63