Mercurial > repos > ebi-gxa > scanpy_run_pca
diff scanpy-run-pca.xml @ 5:242cf7e1fd0c draft
planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 400799f99ee36ad12b990b1ccabf4be16a26c003
author | ebi-gxa |
---|---|
date | Mon, 25 Nov 2019 14:36:39 -0500 |
parents | 7798c318e7d7 |
children | c9fb2c0598cd |
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--- a/scanpy-run-pca.xml Wed Nov 20 05:11:38 2019 -0500 +++ b/scanpy-run-pca.xml Mon Nov 25 14:36:39 2019 -0500 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy0"> +<tool id="scanpy_run_pca" name="Scanpy RunPCA" version="@TOOL_VERSION@+galaxy6"> <description>for dimensionality reduction</description> <macros> <import>scanpy_macros2.xml</import> @@ -55,7 +55,7 @@ </inputs> <outputs> - <data name="output_h5" format="h5" from_work_dir="output.h5" label="${tool.name} on ${on_string}: PCA object"/> + <expand macro="output_data_obj" description="PCA object"/> <data name="output_embed" format="tsv" from_work_dir="embeddings.tsv" label="${tool.name} on ${on_string}: PCA embeddings"> <filter>extra_outputs and 'embeddings' in extra_outputs.split(',')</filter> </data>