Mercurial > repos > ebi-gxa > scmap_index_cell

annotate scmap_macros.xml @ 11:dd0b44bd359a draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:43:08 +0000
parents 7c3f9606ed0a
children d9f79a39b39d
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628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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1 <macros>
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dd0b44bd359a "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
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2 <token name="@TOOL_VERSION@">1.6.3</token>
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3 <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token>
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4 <token name="@PROFILE@">18.01</token>
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5 <xml name="requirements">
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6 <requirements>
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7 <requirement type="package" version="0.0.11">scmap-cli</requirement>
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8 <yield/>
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9 </requirements>
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10 </xml>
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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11 <xml name="version">
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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12 <version_command><![CDATA[
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13 echo $(R --version | grep version | grep -v GNU)", scmap version" $(R --vanilla --slave -e "library(scmap); cat(sessionInfo()\$otherPkgs\$scmap\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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14 ]]></version_command>
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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15 </xml>
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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16 <token name="@VERSION_HISTORY@"><![CDATA[
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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17 **Version history**
11
dd0b44bd359a "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
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18 1.6.3+galaxy0: Update scmap-cli to 0.0.11
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19 1.6.2+galaxy0: Update scmap-cli to 0.0.10
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11b4b9b85b9c "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit f1d792b2db8e09e441cc75629d34a13e4fb19153"
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20 1.6.1+galaxy0: Update scmap-cli to 0.0.9.
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21 1.6.0+galaxy0: Initial contribution. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
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22 ]]></token>
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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23 <xml name="citations">
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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24 <citations>
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25 <citation type="bibtex">
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26 @Article{,
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27 title = {scmap - A tool for unsupervised projection of single cell RNA-seq data},
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28 author = {Vladimir Yu. Kiselev and Martin Hemberg},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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29 year = {2017},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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30 journal = {bioRxiv},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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31 url = {http://doi.org/10.1101/150292},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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32 }
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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33 </citation>
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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34 <citation type="bibtex">
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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35 @misc{githubscmap-cli.git,
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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36 author = {Jonathan Manning, EBI Gene Expression Team},
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37 year = {2018},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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38 title = {scmap-cli: command line interface for scmap},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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39 publisher = {GitHub},
628a433819c6 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 815e36252846236124957052433572f1c1247114"
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40 journal = {GitHub repository},
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41 url = {https://github.com/ebi-gene-expression-group/scmap-cli.git},
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42 }
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43 </citation>
3
5593b0744de9 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
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44 <citation type="doi">10.1101/2020.04.08.032698</citation>
0
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45 <yield />
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46 </citations>
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47 </xml>
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48 </macros>