Mercurial > repos > ebi-gxa > scmap_preprocess_sce

annotate scmap_macros.xml @ 1:559b9d22f264 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 2f718294665c9d01702ad765904972f463154cd6"
author ebi-gxa
date Fri, 01 May 2020 09:53:59 -0400
parents a74497e18277
children 72a7d8593afc
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
1 <macros>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
2 <token name="@TOOL_VERSION@">1.6.0</token>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
3 <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
4 <token name="@PROFILE@">18.01</token>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
5 <xml name="requirements">
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
6 <requirements>
1
559b9d22f264 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 2f718294665c9d01702ad765904972f463154cd6"
ebi-gxa
parents: 0
diff changeset
7 <requirement type="package" version="0.0.9">scmap-cli</requirement>
0
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
8 <yield/>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
9 </requirements>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
10 </xml>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
11 <xml name="version">
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
12 <version_command><![CDATA[
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
13 echo $(R --version | grep version | grep -v GNU)", scmap version" $(R --vanilla --slave -e "library(scmap); cat(sessionInfo()\$otherPkgs\$scmap\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
14 ]]></version_command>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
15 </xml>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
16 <token name="@VERSION_HISTORY@"><![CDATA[
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
17 **Version history**
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
18 1.6.0+galaxy0: Initial contribution. Jonathan Manning, Expression Atlas team https://www.ebi.ac.uk/gxa/home at EMBL-EBI https://www.ebi.ac.uk/.
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
19 ]]></token>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
20 <xml name="citations">
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
21 <citations>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
22 <citation type="bibtex">
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
23 @Article{,
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
24 title = {scmap - A tool for unsupervised projection of single cell RNA-seq data},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
25 author = {Vladimir Yu. Kiselev and Martin Hemberg},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
26 year = {2017},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
27 journal = {bioRxiv},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
28 url = {http://doi.org/10.1101/150292},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
29 }
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
30 </citation>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
31 <citation type="bibtex">
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
32 @misc{githubscmap-cli.git,
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
33 author = {Jonathan Manning, EBI Gene Expression Team},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
34 year = {2018},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
35 title = {scmap-cli: command line interface for scmap},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
36 publisher = {GitHub},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
37 journal = {GitHub repository},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
38 url = {https://github.com/ebi-gene-expression-group/scmap-cli.git},
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
39 }
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
40 </citation>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
41 <citation type="doi">10.1101/2020.04.08.032698</citation>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
42 <yield />
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
43 </citations>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
44 </xml>
a74497e18277 "planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
ebi-gxa
parents:
diff changeset
45 </macros>