Mercurial > repos > ebi-gxa > scmap_preprocess_sce
comparison scmap_preprocess_sce.xml @ 0:a74497e18277 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
| author | ebi-gxa |
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| date | Wed, 29 Apr 2020 12:39:06 -0400 |
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| -1:000000000000 | 0:a74497e18277 |
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| 1 <tool id="scmap_preprocess_sce" name="Scmap pre-process" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> | |
| 2 <description>Pre-process SCE object before running downstream analysis</description> | |
| 3 <macros> | |
| 4 <import>scmap_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 scmap-preprocess-sce.R --input-object "${input_single_cell_experiment}" --output-sce-object "${output_single_cell_experiment}" | |
| 9 ]]></command> | |
| 10 <inputs> | |
| 11 <param type="data" name="input_single_cell_experiment" label="Input SCE object" format="rdata" help="SCE object to be pre-processed" /> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data name="output_single_cell_experiment" format="rdata" /> | |
| 15 </outputs> | |
| 16 <help><![CDATA[ | |
| 17 @HELP@ | |
| 18 | |
| 19 @VERSION_HISTORY@ | |
| 20 ]]></help> | |
| 21 <expand macro="citations" /> | |
| 22 </tool> |