Mercurial > repos > ebi-gxa > scmap_scmap_cell

comparison scmap_scmap_cell.xml @ 2:2b85cec412c3 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 542b6e6848acedbbedb6fa2d4b44c8d476597cdd"
author ebi-gxa
date Fri, 03 Apr 2020 06:36:32 -0400
parents cb6b70d45519
children 19f2fc7a8920
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1:c2ca3bc40523 2:2b85cec412c3
1 <tool id="scmap_scmap_cell" name="scmap cell projection" version="@TOOL_VERSION@+galaxy0" python_template_version="3.5"> 1 <tool id="scmap_scmap_cell" name="scmap cell projection" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
2 <description>searches each cell in a query dataset for the nearest neighbours by cosine distance within a collection of reference datasets.</description> 2 <description>searches each cell in a query dataset for the nearest neighbours by cosine distance within a collection of reference datasets.</description>
3 <macros> 3 <macros>
4 <import>scmap_macros.xml</import> 4 <import>scmap_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
43 <tests> 43 <tests>
44 <test> 44 <test>
45 <param name="index_single_cell_experiment" value="index_cell.rds" ftype="rdata"/> 45 <param name="index_single_cell_experiment" value="index_cell.rds" ftype="rdata"/>
46 <param name="project_single_cell_experiment" value="test_sce.rds" ftype="rdata"/> 46 <param name="project_single_cell_experiment" value="test_sce.rds" ftype="rdata"/>
47 <param name="cluster_projection" value="true" ftype="rdata"/> 47 <param name="cluster_projection" value="true" ftype="rdata"/>
48 <output name="output_single_cell_experiment" file="closest_cells_clusters.rds"/> 48 <output name="output_single_cell_experiment" file="closest_cells_clusters.rds" compare="sim_size"/>
49 <output name="closest_cells_clusters_csv" file="closest_cells_clusters.csv" /> 49 <output name="closest_cells_clusters_csv" file="closest_cells_clusters.csv" compare="sim_size" />
50 <output name="closest_cells_text_file" file="closest_cells.csv"/> 50 <output name="closest_cells_text_file" file="closest_cells.csv" compare="sim_size"/>
51 <output name="closest_cells_similarities_text_file" file="closest_cells_similarities.csv"/> 51 <output name="closest_cells_similarities_text_file" file="closest_cells_similarities.csv" compare="sim_size"/>
52 </test> 52 </test>
53 </tests> 53 </tests>
54 <help><![CDATA[ 54 <help><![CDATA[
55 @HELP@ 55 @HELP@
56 56