Mercurial > repos > ebi-gxa > scmap_scmap_cell
diff scmap_scmap_cell.xml @ 2:2b85cec412c3 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 542b6e6848acedbbedb6fa2d4b44c8d476597cdd"
| author | ebi-gxa |
|---|---|
| date | Fri, 03 Apr 2020 06:36:32 -0400 |
| parents | cb6b70d45519 |
| children | 19f2fc7a8920 |
line wrap: on
line diff
--- a/scmap_scmap_cell.xml Fri Oct 25 08:45:31 2019 -0400 +++ b/scmap_scmap_cell.xml Fri Apr 03 06:36:32 2020 -0400 @@ -1,4 +1,4 @@ -<tool id="scmap_scmap_cell" name="scmap cell projection" version="@TOOL_VERSION@+galaxy0" python_template_version="3.5"> +<tool id="scmap_scmap_cell" name="scmap cell projection" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>searches each cell in a query dataset for the nearest neighbours by cosine distance within a collection of reference datasets.</description> <macros> <import>scmap_macros.xml</import> @@ -45,10 +45,10 @@ <param name="index_single_cell_experiment" value="index_cell.rds" ftype="rdata"/> <param name="project_single_cell_experiment" value="test_sce.rds" ftype="rdata"/> <param name="cluster_projection" value="true" ftype="rdata"/> - <output name="output_single_cell_experiment" file="closest_cells_clusters.rds"/> - <output name="closest_cells_clusters_csv" file="closest_cells_clusters.csv" /> - <output name="closest_cells_text_file" file="closest_cells.csv"/> - <output name="closest_cells_similarities_text_file" file="closest_cells_similarities.csv"/> + <output name="output_single_cell_experiment" file="closest_cells_clusters.rds" compare="sim_size"/> + <output name="closest_cells_clusters_csv" file="closest_cells_clusters.csv" compare="sim_size" /> + <output name="closest_cells_text_file" file="closest_cells.csv" compare="sim_size"/> + <output name="closest_cells_similarities_text_file" file="closest_cells_similarities.csv" compare="sim_size"/> </test> </tests> <help><![CDATA[