Mercurial > repos > ebi-gxa > scpred_get_std_output
changeset 1:a7bf1d2b310b draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 241c850301f8094f6aa0016e2335a8b550c29aed"
| author | ebi-gxa |
|---|---|
| date | Fri, 24 Apr 2020 11:27:42 -0400 |
| parents | 156b1e9cc269 |
| children | 138d00a58412 |
| files | scpred_get_std_output.xml scpred_macros.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/scpred_get_std_output.xml Wed Apr 08 06:29:34 2020 -0400 +++ b/scpred_get_std_output.xml Fri Apr 24 11:27:42 2020 -0400 @@ -5,10 +5,11 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --output-table "${output_table}" + scpred_get_std_output.R --predictions-file "${predictions_file}" --get-scores "${get_scores}" --classifier '${classifier}' --output-table "${output_table}" ]]></command> <inputs> <param type="data" name="predictions_file" label="Predictions file" format="txt" help="Path to the predictions file in text format" /> + <param type="data" name="classifier" label="Classifier object" format="rdata" help="Path to the classifier object used to obtain predictions" /> <param type="boolean" checked="false" name="get_scores" label="Get scores" help="Boolean: should the prediction scores be included? default: FALSE" /> </inputs> <outputs>
--- a/scpred_macros.xml Wed Apr 08 06:29:34 2020 -0400 +++ b/scpred_macros.xml Fri Apr 24 11:27:42 2020 -0400 @@ -4,7 +4,7 @@ <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="0.0.5">scpred-cli</requirement> + <requirement type="package" version="0.0.7">scpred-cli</requirement> <yield/> </requirements> </xml> @@ -37,10 +37,9 @@ journal = {GitHub repository}, url = {https://github.com/ebi-gene-expression-group/scpred-cli.git}, } - </citation> + <citation type="doi">10.1101/2020.04.08.032698</citation> <yield /> </citations> </xml> </macros> -