Mercurial > repos > ebi-gxa > scpred_preprocess_data
changeset 1:03b45c148df7 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 59503a4ae6f53a7782336df4f82fbd755cfb2933"
| author | ebi-gxa |
|---|---|
| date | Wed, 29 Apr 2020 12:42:08 -0400 |
| parents | ec6d9a9fb273 |
| children | 82087ae9fe4e |
| files | scpred_preprocess_data.xml |
| diffstat | 1 files changed, 11 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/scpred_preprocess_data.xml Mon Apr 27 09:43:08 2020 -0400 +++ b/scpred_preprocess_data.xml Wed Apr 29 12:42:08 2020 -0400 @@ -1,11 +1,20 @@ -<tool id="scpred_preprocess_data" name="Scpred pre-process" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> +<tool id="scpred_preprocess_data" name="Scpred pre-process" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>Pre-process input dataset (no train/test split)</description> <macros> <import>scpred_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ - scpred_preprocess_data.R --input-sce-object "${input_sce_object}" --normalised-counts-slot "${norm_counts_slot}" --output-matrix-object "${output_mat_object}" --output-labels "${output_labels}" ]]></command> + scpred_preprocess_data.R --input-sce-object "${input_sce_object}" --output-matrix-object "${output_mat_object}" + + #if $norm_counts_slot + --normalised-counts-slot "${norm_counts_slot}" + #end if + #if $output_labels + --output-labels "${output_labels}" + #end if + + ]]></command> <inputs> <param type="data" name="input_sce_object" label="SCE object containing expression data" format="rdata" help="File with serialized SingleCellExperiment object that contains expression matrix" /> <param type="text" name="norm_counts_slot" value="normcounts" label="Normalised counts slot" help="Slot containing normalised counts in input SCE object" />