Mercurial > repos > ebi-gxa > scpred_train_model
comparison scpred_train_model.xml @ 0:b17acf485397 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
| author | ebi-gxa |
|---|---|
| date | Wed, 08 Apr 2020 06:28:47 -0400 |
| parents | |
| children | 01493c9cdfa7 |
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| -1:000000000000 | 0:b17acf485397 |
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| 1 <tool id="scpred_train_model" name="Scpred train" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@"> | |
| 2 <description>Train classification model</description> | |
| 3 <macros> | |
| 4 <import>scpred_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements" /> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | |
| 8 scpred_train_model.R --input-object "${input_object}" --model "${model}" --output-path "${output_obj_path}" --train-probs-plot "${train_probs_plot}" | |
| 9 ]]></command> | |
| 10 <inputs> | |
| 11 <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format"/> | |
| 12 <param type="text" name="model" label="Model type to train" value="svmRadial" help="Model type used for training. Must be one of the models supported by Caret package. Default: svmRadial" /> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data name="output_obj_path" format="rdata" /> | |
| 16 <data name="train_probs_plot" format="png" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input_object" value="scPred_feat_space.rds" /> | |
| 21 <output name="output_obj_path" file="scPred_trained.rds" compare="sim_size" /> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help><![CDATA[ | |
| 25 @HELP@ | |
| 26 | |
| 27 @VERSION_HISTORY@ | |
| 28 ]]></help> | |
| 29 <expand macro="citations" /> | |
| 30 </tool> |