Mercurial > repos > ebi-gxa > scpred_train_model

diff scpred_train_model.xml @ 0:b17acf485397 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 6ea13bbd7294b94201a5d776307b3f0742847db1"
author ebi-gxa
date Wed, 08 Apr 2020 06:28:47 -0400
parents
children 01493c9cdfa7
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/scpred_train_model.xml	Wed Apr 08 06:28:47 2020 -0400
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+<tool id="scpred_train_model" name="Scpred train" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+    <description>Train classification model</description>
+    <macros>
+        <import>scpred_macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="exit_code"><![CDATA[
+        scpred_train_model.R --input-object "${input_object}" --model "${model}"  --output-path "${output_obj_path}" --train-probs-plot "${train_probs_plot}"
+        ]]></command>
+    <inputs>
+        <param type="data" name="input_object" label="Input SCE object" format="rdata" help="Input SCE object in .rds format"/>
+        <param type="text" name="model" label="Model type to train" value="svmRadial" help="Model type used for training. Must be one of the models supported by Caret package. Default: svmRadial" />
+    </inputs>
+    <outputs>
+        <data name="output_obj_path" format="rdata" />
+        <data name="train_probs_plot" format="png" />
+    </outputs>
+     <tests>
+        <test>
+            <param name="input_object" value="scPred_feat_space.rds" />
+            <output name="output_obj_path" file="scPred_trained.rds" compare="sim_size" />
+        </test>
+    </tests>
+     <help><![CDATA[
+    @HELP@
+    
+    @VERSION_HISTORY@
+    ]]></help>
+    <expand macro="citations" />
+</tool>