Mercurial > repos > ebi-gxa > seurat_find_clusters

diff seurat_find_clusters.xml @ 4:8ed848ef86fd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
author ebi-gxa
date Fri, 27 Nov 2020 13:47:46 +0000
parents 0715bcb14547
children eefaffdcd441
line wrap: on
line diff
--- a/seurat_find_clusters.xml	Sat Jul 11 08:44:11 2020 -0400
+++ b/seurat_find_clusters.xml	Fri Nov 27 13:47:46 2020 +0000
@@ -78,8 +78,9 @@
     <tests>
         <!-- Ensure count matrix input works -->
         <test>
-            <param name="input" ftype="rdata" value="out_runpca.rds"/>
-            <output name="rds_seurat_file" ftype="rdata" value="out_findclust.rds" compare="sim_size"/>
+            <param name="rds_seurat_file" ftype="rdata" value="neighbours_seurat.rds"/>
+            <output name="rds_seurat_file" ftype="rdata" value="cluster_seurat.rds" compare="sim_size"/>
+            <output name="output_tab" value="clusters.txt" compare="sim_size" delta="1000000" />
         </test>
     </tests>
     <help><![CDATA[