Mercurial > repos > ebi-gxa > seurat_find_markers

comparison seurat_find_markers.xml @ 5:3dd20b758756 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 355bb52d2e9d170b1db237e649657cc14e0a047a"
author ebi-gxa
date Fri, 04 Mar 2022 07:26:16 +0000
parents a1842dbe01cd
children 07fc9f4841b3
comparison
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4:a1842dbe01cd 5:3dd20b758756
1 <tool id="seurat_find_markers" name="Seurat FindMarkers" version="@SEURAT_VERSION@+galaxy0"> 1 <tool id="seurat_find_markers" name="Seurat FindMarkers" profile="18.01" version="@SEURAT_VERSION@+galaxy0">
2 <description>find markers (differentially expressed genes)</description> 2 <description>find markers (differentially expressed genes)</description>
3 <macros> 3 <macros>
4 <import>seurat_macros.xml</import> 4 <import>seurat_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
77 <data name="output" format="csv" from_work_dir="output.txt" label="${tool.name} on ${on_string}: Text file"/> 77 <data name="output" format="csv" from_work_dir="output.txt" label="${tool.name} on ${on_string}: Text file"/>
78 </outputs> 78 </outputs>
79 79
80 <tests> 80 <tests>
81 <test> 81 <test>
82 <param name="rds_seurat_file" ftype="rdata" value="cluster_seurat.rds"/> 82 <param name="rds_seurat_file" ftype="rdata" value="E-MTAB-6077-3k_features_90_cells-clusters.rds"/>
83 <output name="output" value="markers.csv" compare="sim_size" delta="1000000"/> 83 <output name="output" >
84 <assert_contents>
85 <has_n_lines n="1038" />
86 </assert_contents>
87 </output>
84 </test> 88 </test>
85 </tests> 89 </tests>
86 <help><![CDATA[ 90 <help><![CDATA[
87 .. class:: infomark 91 .. class:: infomark
88 92