Mercurial > repos > ebi-gxa > seurat_run_pca
changeset 4:3fd59cdcb477 draft
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit a1ad1ddd9b8e4db5bb82c3accae8311e0e488b19"
| author | ebi-gxa |
|---|---|
| date | Fri, 27 Nov 2020 13:49:23 +0000 |
| parents | a54f3400a885 |
| children | 9547ebb03f6f |
| files | seurat_macros.xml seurat_run_pca.xml |
| diffstat | 2 files changed, 8 insertions(+), 4 deletions(-) [+] |
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--- a/seurat_macros.xml Sat Jul 11 08:42:37 2020 -0400 +++ b/seurat_macros.xml Fri Nov 27 13:49:23 2020 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> - <token name="@VERSION@">0.0.7</token> - <token name="@SEURAT_VERSION@">3.1.1</token> + <token name="@VERSION@">0.0.8</token> + <token name="@SEURAT_VERSION@">3.1.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">seurat-scripts</requirement> @@ -96,6 +96,7 @@ <token name="@VERSION_HISTORY@"><![CDATA[ **Version history** +3.1.2_0.0.8: Upd ate metadata parsing 3.1.1_0.0.7: Exposes perplexity and enables tab input.
--- a/seurat_run_pca.xml Sat Jul 11 08:42:37 2020 -0400 +++ b/seurat_run_pca.xml Fri Nov 27 13:49:23 2020 +0000 @@ -46,8 +46,11 @@ <tests> <test> - <param name="input" ftype="rdata" value="out_scale.rds"/> - <output name="rds_seurat_file" ftype="rdata" value="out_runpca.rds" compare="sim_size"/> + <param name="rds_seurat_file" ftype="rdata" value="scaled_seurat.rds"/> + <output name="rds_seurat_file" ftype="rdata" value="pca_seurat.rds" compare="sim_size" delta="10000000"/> + <output name="output_embed" value="pca_embeddings.csv" compare="sim_size" delta="10000000" /> + <output name="output_load" value="pca_loadings.csv" compare="sim_size" delta="10000000" /> + <output name="output_sdev" value="pca_stdev.txt" compare="sim_size" delta="10000000" /> </test> </tests> <help><![CDATA[