Mercurial > repos > ebi-gxa > suite_scanpy_scripts

changeset 1:ec7654a43721 draft

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"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy commit 815e36252846236124957052433572f1c1247114"
author ebi-gxa
date Mon, 16 Sep 2019 12:46:14 -0400
parents 8762428ceab3
children b10f323fd237
files repository_dependencies.xml
diffstat 1 files changed, 20 insertions(+), 13 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Wed Apr 03 11:12:56 2019 -0400
+++ b/repository_dependencies.xml	Mon Sep 16 12:46:14 2019 -0400
@@ -1,16 +1,23 @@
 <?xml version="1.0" ?>
 <repositories description="scanpy-scripts, command-line wrappers around Scanpy.">
-    <repository changeset_revision="1a30a61effea" name="scanpy_parameter_iterator" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="1dda36e73482" name="scanpy_normalise_data" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="5063cd7f8c89" name="scanpy_run_pca" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c608fd80ec15" name="scanpy_find_markers" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ce27ae8a36cd" name="scanpy_find_cluster" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="96b851e96dd0" name="scanpy_scale_data" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="d1b97a5d5a8d" name="scanpy_filter_genes" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="88c1516e25e0" name="scanpy_run_umap" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f6f189ce4ebc" name="scanpy_run_tsne" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="3d242b0d97d0" name="scanpy_compute_graph" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="572b6e3b2aff" name="scanpy_read_10x" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="305d0cbe0ffd" name="scanpy_find_variable_genes" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="9f0ca1641ab2" name="scanpy_filter_cells" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="c6d3a3609a8a" name="scanpy_parameter_iterator" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="f76e8237073a" name="scanpy_plot_trajectory" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="6c990f8ccad3" name="scanpy_regress_variable" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="e541f264fad2" name="scanpy_normalise_data" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="7798c318e7d7" name="scanpy_run_pca" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="71668dd2d47b" name="scanpy_find_markers" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="ee181563bae7" name="scanpy_find_cluster" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="9acb5f068e6b" name="scanpy_scale_data" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="7aebd6265a97" name="scanpy_filter_genes" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="96af0059b974" name="scanpy_run_fdg" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="0ac2f9f2313b" name="scanpy_run_umap" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="f57f57c459d8" name="scanpy_run_dpt" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="2e74fd7b5f45" name="scanpy_run_tsne" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="3e53344e540d" name="scanpy_run_paga" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="c63bc0b71865" name="scanpy_plot_embed" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="34d65f2ccde3" name="scanpy_run_diffmap" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="e7fd6981c0f0" name="scanpy_compute_graph" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="3faf577f3e40" name="scanpy_read_10x" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="b089f4a55e6b" name="scanpy_find_variable_genes" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository changeset_revision="dcfb23758646" name="scanpy_filter_cells" owner="ebi-gxa" toolshed="https://toolshed.g2.bx.psu.edu"/>
 </repositories>
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