Mercurial > repos > ecology > gdal_gdalwarp

annotate gdalwarp.xml @ 1:daf66eda45b8 draft

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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit e533a16994d9f0cbab9c5c854db3ac896e07b6e2
author ecology
date Wed, 27 Feb 2019 14:15:54 -0500
parents 485204e18759
children dfebd2d3220b
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485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
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1 <tool id="gdal_gdalwarp" name="GDAL Warp" version="@VERSION@">
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
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2 <description>image reprojection and warping utility</description>
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3 <macros>
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4 <import>gdal_macros.xml</import>
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5 </macros>
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6 <expand macro="gdal_requirements" />
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7 <command detect_errors="exit_code"><![CDATA[
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8 gdalwarp
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9 -q
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10 #for $i in $input
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11 '$i'
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12 #end for
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13 -of '$of'
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14 #if str($s_srs).strip()!=''
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15 -s_srs '$s_srs'
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16 #end if
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18 #if str($t_srs).strip()!=''
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19 -t_srs '$t_srs'
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20 #end if
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22 #if $settings.advanced=="advanced"
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24 #if $settings.condi_tr.tr=='tr'
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25 -tr $settings.condi_tr.xres $settings.condi_tr.yres
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26 #end if
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28 -to '$settings.to'
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30 -wo '$settings.wo'
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32 #if $settings.order!='no_value'
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33 -order '$settings.order'
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34 #end if
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36 #if $settings.condi_resample.resample=='resampling'
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37 -r $settings.condi_resample.r
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38 #end if
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40 #if $settings.condi_et.et=='et'
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41 -et $settings.condi_et.et
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42 #end if
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43
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44 #if $settings.condi_refine_gcps.refine_gcps=='refine_gcps'
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45 -refine_gcps $settings.condi_refine_gcps.tolerance $settings.condi_refine_gcps.minimum_gcps
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46 #end if
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47
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48 #if $settings.condi_te.te=='te'
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49 -te $settings.condi_te.xmin $settings.condi_te.ymin $settings.condi_te.xmax $settings.condi_te.ymax
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50 #end if
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51
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52 $settings.tps
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53 $settings.rpc
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54 $settings.geoloc
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55
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56 #if str($settings.srcnodata).strip()!=''
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57 -srcnodata '$settings.srcnodata'
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58 #end if
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59
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60 $settings.dstalpha
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61 #end if
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62
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63 '$output'
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64
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65 ]]></command>
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66
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67 <inputs>
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68 <expand macro="gdal_input_raster_multiple"/>
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69 <expand macro="gdal_param_of"/>
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70 <param name="s_srs" type="text" label="Source spatial reference set" value="" help="-s_srs def. The coordinate systems that can be passed are anything supported by the OGRSpatialReference."/>
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71 <param name="t_srs" type="text" label="Target spatial reference set" value="" help="-t_srs srs_def. The coordinate systems that can be passed are anything supported by the OGRSpatialReference."/>
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72 <conditional name="settings">
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73 <expand macro="gdal_advanced_params_select"/>
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74 <when value="advanced">
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75 <expand macro="gdal_param_tr"/>
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76 <param name="to" type="text" label="Transformer option" help="-to NAME=VALUE. Set a transformer option suitable to pass to GDALCreateGenImgProjTransformer2()." value=""/>
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77 <param name="wo" type="text" label="Warp option" help="-wo NAME=VALUE. Set a warp option." value="" />
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78 <param name="order" type="select" label="Order of polynomial" help="-order n. Order of polynomial used for warping (1 to 3). The default is to select a polynomial order based on the number of GCPs.">
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79 <option value="no_value" selected="true">Select an order.</option>
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80 <option value="1">1</option>
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81 <option value="2">2</option>
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82 <option value="3">3</option>
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83 </param>
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84 <param name="tps" type="boolean" label="Force use of thin plate spline transformer" help="-tps. Based on available GCPs" truevalue="-tps" falsevalue="" checked="false"/>
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85 <param name="rpc" type="boolean" label="Force use of RPCs" help="-rpc" truevalue="-rpc" falsevalue="" checked="false"/>
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86 <param name="geoloc" type="boolean" label="Force use of Geolocation Arrays." help="-geoloc" truevalue="-geoloc" falsevalue="" checked="false"/>
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87 <param name="srcnodata" type="text" label="Set nodata masking values for input bands" help="-srcnodata value. Different values can be supplied for each band" value=""/>
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88 <param name="dstalpha" type="boolean" label="Create an output alpha band to identify nodata (unset/transparent) pixels" help="-dstalpha" truevalue="-dstalpha" falsevalue="" checked="false"/>
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89 <conditional name="condi_et">
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90 <param name="et" label="Error threshold for transformation approximation" help="-et" type="select">
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
91 <option value="et">Use an error threshold, option -et</option>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
92 <option value="no_et" selected="true">Don't use an error threshold</option>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
93 </param>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
94 <when value="no_et">
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
95 </when>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
96 <when value="et">
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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97 <param name="et" type="float" help="-et In pixel units - defaults to 0.125, unless, the RPC_DEM warping option is specified, in which case, an exact transformer, i.e. err_threshold=0, will be used)" label="Error threshold" value=""/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
98 </when>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
99 </conditional>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
100 <conditional name="condi_refine_gcps">
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
101 <param name="refine_gcps" type="select" label="Refines the GCPs by automatically eliminating outliers" help="-refine_gcps. Set tolerence and minimum gcps">
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
102 <option value="no_refine_gcps" selected="true">Don't use the -refine_gcps option</option>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
103 <option value="refine_gcps">Use the -refine_gcps option</option>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
104 </param>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
105 <when value="no_refine_gcps">
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
106 </when>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
107 <when value="refine_gcps">
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
108 <param name="tolerance" type="float" label="tolerance" value="0" help="In pixel units if no projection is available, otherwise it is in SRS units"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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109 <param name="minimum_gcps" type="float" label="minimum_gcps" value="0" help="If minimum_gcps is not provided, the minimum GCPs according to the polynomial model is used"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
110 </when>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
111 </conditional>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
112 <expand macro="gdal_param_r"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
113 <expand macro="gdal_param_te"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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114 </when>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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115 </conditional>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
116 </inputs>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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117
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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118 <outputs>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
119 <expand macro="gdal_output_change_format"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
120 </outputs>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
121
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
122 <tests>
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ecology
parents:
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123 <test>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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124 <param name="input" value="stere.tif"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
125 <param name="of" value="GTiff" />
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
126 <param name="t_srs" value="EPSG:2154" />
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
127 <param name="advanced" value="simple"/>
1
daf66eda45b8 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit e533a16994d9f0cbab9c5c854db3ac896e07b6e2
ecology
parents: 0
diff changeset
128 <output name="output" file="stere_warp1.tiff" compare="sim_size" />
0
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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129 </test>
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ecology
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130
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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131 <test>
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ecology
parents:
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132 <param name="input" value="tinyworld.tif"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
133 <param name="t_srs" value="+proj=ortho +datum=WGS84" />
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
134 <param name="advanced" value="simple"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
135 <output name="output" file="gdalwarp_test2_out.tif"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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136 </test>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
137
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ecology
parents:
diff changeset
138 <test>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
139 <param name="input" value="tinyworld.tif"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
140 <param name="t_srs" value="+proj=ortho +datum=WGS84" />
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
141 <param name="advanced" value="advanced"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
142 <param name="wo" value="SOURCE_EXTRA=125"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
143 <output name="output" file="gdalwarp_test3_out.tif"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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144 </test>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
145
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
146
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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147 <test>
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ecology
parents:
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148 <param name="input" value="tinyworld.tif"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
149 <param name="t_srs" value="+proj=ortho +datum=WGS84" />
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
150 <param name="advanced" value="advanced"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
151 <param name="wo" value="SOURCE_EXTRA=125"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
152 <param name="dstalpha" value="-dstalpha"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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153 <param name="srcnodata" value="11 10 50"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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154 <output name="output" file="gdalwarp_test4_out.tif"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
155 </test>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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156
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
157 <test>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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158 <param name="input" value="small_east.dem,small_west.dem"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
diff changeset
159 <param name="advanced" value="simple"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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160 <output name="output" file="small_warpmerged.tif"/>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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161 </test>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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162
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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163 </tests>
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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164 <help><![CDATA[
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ecology
parents:
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165 ==========================
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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166 Gdalwarp
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ecology
parents:
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167 ==========================
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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168 **What it does**
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169
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
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170 The gdalwarp utility is an image mosaicing, reprojection and warping utility. The program can reproject to any supported projection, and can also apply GCPs stored with the image if the image is "raw" with control information.
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
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171
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ecology
parents:
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172 |
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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173
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ecology
parents:
diff changeset
174 **How to use it**
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ecology
parents:
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175
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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176 Add as much input files you want to warp.
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
ecology
parents:
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177
485204e18759 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tools/gdal commit b964e8f7d7bb076d63a1c7bdfbbdba0f9074d517
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178 Specifiy output format using short name (http://www.gdal.org/formats_list.html).
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ecology
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179
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ecology
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180 Specify source and target spatial reference set.
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ecology
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181
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182 |
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183
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184 **Advanced options and sources**
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186 To see complete details and help section please check the official gdal sources.
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188 http://www.gdal.org
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190 http://www.gdal.org/gdalwarp.html
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192 Raster Processing Tutorial : https://trac.osgeo.org/gdal/wiki/UserDocs/RasterProcTutorial
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193 ]]></help>
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194 <expand macro="gdal_citation"/>
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195 </tool>