changeset 3:642e31c435c9 draft

planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit 5c327a780dc58fb954e7b65db6fd413ee3909c84
author ecology
date Mon, 04 Dec 2023 21:49:43 +0000
parents 8a697f446051
children 59349973537f
files eal_table_templates.R eal_templates.R table_templates.R templates1.R
diffstat 4 files changed, 44 insertions(+), 44 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/eal_table_templates.R	Mon Dec 04 21:49:43 2023 +0000
@@ -0,0 +1,21 @@
+#28/11/2023 #SEGUINEAU Pauline 
+
+#Load packages
+
+library(EMLassemblyline)
+
+#Load arguments
+
+if (length(commandArgs(trailingOnly = TRUE)) > 0) {
+    data_table <- commandArgs(trailingOnly = TRUE)[1]
+}
+
+#Transform arguments
+
+table =  strsplit(data_table," ")
+
+#Make templates to describe data tables : Describes columns of a data table (classes, units, datetime formats, missing value codes) + catégorical variables.
+
+template_table_attributes(path = ".",data.path= "data_files", data.table = table[[1]])
+template_categorical_variables(path = ".", data.path = "data_files")
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/eal_templates.R	Mon Dec 04 21:49:43 2023 +0000
@@ -0,0 +1,23 @@
+#22/11/2023 #SEGUINEAU Pauline 
+
+###First tool of EML Workflow
+
+#Load packages
+
+library(EMLassemblyline)
+
+#Load arguments
+
+args = commandArgs(trailingOnly=TRUE)
+if(length(args)>0){
+  
+  license <- args[1]
+  file_type <- args[2]
+}
+
+#Make templates to describe core features of a data package (abstract, methods, keywords, personnel, license). 
+
+template_core_metadata(path=".",license = license, file.type = file_type)
+
+
+
--- a/table_templates.R	Sat Dec 02 01:50:00 2023 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,21 +0,0 @@
-#28/11/2023 #SEGUINEAU Pauline 
-
-#Load packages
-
-library(EMLassemblyline)
-
-#Load arguments
-
-if (length(commandArgs(trailingOnly = TRUE)) > 0) {
-    data_table <- commandArgs(trailingOnly = TRUE)[1]
-}
-
-#Transform arguments
-
-table =  strsplit(data_table," ")
-
-#Make templates to describe data tables : Describes columns of a data table (classes, units, datetime formats, missing value codes) + catégorical variables.
-
-template_table_attributes(path = ".",data.path= "data_files", data.table = table[[1]])
-template_categorical_variables(path = ".", data.path = "data_files")
-
--- a/templates1.R	Sat Dec 02 01:50:00 2023 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-#22/11/2023 #SEGUINEAU Pauline 
-
-###First tool of EML Workflow
-
-#Load packages
-
-library(EMLassemblyline)
-
-#Load arguments
-
-args = commandArgs(trailingOnly=TRUE)
-if(length(args)>0){
-  
-  license <- args[1]
-  file_type <- args[2]
-}
-
-#Make templates to describe core features of a data package (abstract, methods, keywords, personnel, license). 
-
-template_core_metadata(path=".",license = license, file.type = file_type)
-
-
-