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comparison PAMPA_GLM_SP.xml @ 4:7a69e1c8ba46 draft default tip

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"planemo upload for repository https://github.com/ColineRoyaux/PAMPA-Galaxy commit 65ab5b6fe84871db0fe18244d805cea19a44e830"
author ecology
date Sat, 26 Jun 2021 07:20:29 +0000
parents c12897ba5f83
children
comparison
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3:c12897ba5f83 4:7a69e1c8ba46
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100 This tool from PAMPA toolsuite computes Generalized Linear Models on population data. 100 This tool from PAMPA toolsuite computes Generalized Linear Models on population data.
101 101
102 It allows user to choose composition of the model : 102 It allows user to choose composition of the model :
103 103
104 - Interest variable among numeric or integer variables of the input file 104 - Response variable among numeric or integer variables of the input file
105 105
106 - Response variables among year, site and/or habitat 106 - Explanatory variables among year, site and/or habitat
107 107
108 - Allocation of random effect on year and/or site 108 - Allocation of random effect on year and/or site
109 109
110 | 110 |
111 111
137 | ... | ... | ... | ... | ... | ... | 137 | ... | ... | ... | ... | ... | ... |
138 +------+----------+--------------+---------+---------+-----+ 138 +------+----------+--------------+---------+---------+-----+
139 139
140 The first input may be extracted from the 'Calculate presence absence' tool. 140 The first input may be extracted from the 'Calculate presence absence' tool.
141 141
142 A tabular file with observation unit data which contains at least as much columns as used response variables in addition with the 'observation.unit' and 'species.code' column. 142 A tabular file with observation unit data which contains at least as much columns as used explanatory variables in addition with the 'observation.unit' column.
143 143
144 +-------------------+--------------+---------+--------+------------+-----+ 144 +-------------------+---------+--------+------------+-----+
145 | observation.unit | species.code | site | year | habitat | ... | 145 | observation.unit | site | year | habitat | ... |
146 +===================+==============+=========+========+============+=====+ 146 +===================+=========+========+============+=====+
147 | year_locationID | species code | site ID | 2000 | habitatID | ... | 147 | year_locationID | site ID | 2000 | habitatID | ... |
148 +-------------------+--------------+---------+--------+------------+-----+ 148 +-------------------+---------+--------+------------+-----+
149 | ... | ... | ... | ... | ... | ... | 149 | ... | ... | ... | ... | ... |
150 +-------------------+--------------+---------+--------+------------+-----+ 150 +-------------------+---------+--------+------------+-----+
151 151
152 The site may represent the same entity as the location or represent an aggregation of several locations. 152 The site may represent the same entity as the location or represent an aggregation of several locations.
153 153
154 | 154 |
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