Mercurial > repos > ecology > pampa_glmsp
comparison PAMPA_GLM_SP.xml @ 4:7a69e1c8ba46 draft default tip
"planemo upload for repository https://github.com/ColineRoyaux/PAMPA-Galaxy commit 65ab5b6fe84871db0fe18244d805cea19a44e830"
author | ecology |
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date | Sat, 26 Jun 2021 07:20:29 +0000 |
parents | c12897ba5f83 |
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3:c12897ba5f83 | 4:7a69e1c8ba46 |
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99 | 99 |
100 This tool from PAMPA toolsuite computes Generalized Linear Models on population data. | 100 This tool from PAMPA toolsuite computes Generalized Linear Models on population data. |
101 | 101 |
102 It allows user to choose composition of the model : | 102 It allows user to choose composition of the model : |
103 | 103 |
104 - Interest variable among numeric or integer variables of the input file | 104 - Response variable among numeric or integer variables of the input file |
105 | 105 |
106 - Response variables among year, site and/or habitat | 106 - Explanatory variables among year, site and/or habitat |
107 | 107 |
108 - Allocation of random effect on year and/or site | 108 - Allocation of random effect on year and/or site |
109 | 109 |
110 | | 110 | |
111 | 111 |
137 | ... | ... | ... | ... | ... | ... | | 137 | ... | ... | ... | ... | ... | ... | |
138 +------+----------+--------------+---------+---------+-----+ | 138 +------+----------+--------------+---------+---------+-----+ |
139 | 139 |
140 The first input may be extracted from the 'Calculate presence absence' tool. | 140 The first input may be extracted from the 'Calculate presence absence' tool. |
141 | 141 |
142 A tabular file with observation unit data which contains at least as much columns as used response variables in addition with the 'observation.unit' and 'species.code' column. | 142 A tabular file with observation unit data which contains at least as much columns as used explanatory variables in addition with the 'observation.unit' column. |
143 | 143 |
144 +-------------------+--------------+---------+--------+------------+-----+ | 144 +-------------------+---------+--------+------------+-----+ |
145 | observation.unit | species.code | site | year | habitat | ... | | 145 | observation.unit | site | year | habitat | ... | |
146 +===================+==============+=========+========+============+=====+ | 146 +===================+=========+========+============+=====+ |
147 | year_locationID | species code | site ID | 2000 | habitatID | ... | | 147 | year_locationID | site ID | 2000 | habitatID | ... | |
148 +-------------------+--------------+---------+--------+------------+-----+ | 148 +-------------------+---------+--------+------------+-----+ |
149 | ... | ... | ... | ... | ... | ... | | 149 | ... | ... | ... | ... | ... | |
150 +-------------------+--------------+---------+--------+------------+-----+ | 150 +-------------------+---------+--------+------------+-----+ |
151 | 151 |
152 The site may represent the same entity as the location or represent an aggregation of several locations. | 152 The site may represent the same entity as the location or represent an aggregation of several locations. |
153 | 153 |
154 | | 154 | |
155 | 155 |