Mercurial > repos > ecology > pampa_glmsp
changeset 4:7a69e1c8ba46 draft default tip
"planemo upload for repository https://github.com/ColineRoyaux/PAMPA-Galaxy commit 65ab5b6fe84871db0fe18244d805cea19a44e830"
| author | ecology |
|---|---|
| date | Sat, 26 Jun 2021 07:20:29 +0000 |
| parents | c12897ba5f83 |
| children | |
| files | PAMPA_GLM_SP.xml pampa_macros.xml |
| diffstat | 2 files changed, 12 insertions(+), 12 deletions(-) [+] |
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--- a/PAMPA_GLM_SP.xml Mon Apr 26 16:05:35 2021 +0000 +++ b/PAMPA_GLM_SP.xml Sat Jun 26 07:20:29 2021 +0000 @@ -101,9 +101,9 @@ It allows user to choose composition of the model : -- Interest variable among numeric or integer variables of the input file +- Response variable among numeric or integer variables of the input file -- Response variables among year, site and/or habitat +- Explanatory variables among year, site and/or habitat - Allocation of random effect on year and/or site @@ -139,15 +139,15 @@ The first input may be extracted from the 'Calculate presence absence' tool. -A tabular file with observation unit data which contains at least as much columns as used response variables in addition with the 'observation.unit' and 'species.code' column. +A tabular file with observation unit data which contains at least as much columns as used explanatory variables in addition with the 'observation.unit' column. -+-------------------+--------------+---------+--------+------------+-----+ -| observation.unit | species.code | site | year | habitat | ... | -+===================+==============+=========+========+============+=====+ -| year_locationID | species code | site ID | 2000 | habitatID | ... | -+-------------------+--------------+---------+--------+------------+-----+ -| ... | ... | ... | ... | ... | ... | -+-------------------+--------------+---------+--------+------------+-----+ ++-------------------+---------+--------+------------+-----+ +| observation.unit | site | year | habitat | ... | ++===================+=========+========+============+=====+ +| year_locationID | site ID | 2000 | habitatID | ... | ++-------------------+---------+--------+------------+-----+ +| ... | ... | ... | ... | ... | ++-------------------+---------+--------+------------+-----+ The site may represent the same entity as the location or represent an aggregation of several locations.
--- a/pampa_macros.xml Mon Apr 26 16:05:35 2021 +0000 +++ b/pampa_macros.xml Sat Jun 26 07:20:29 2021 +0000 @@ -54,10 +54,10 @@ <xml name="pampa_input_GLM"> <param name="input_metric" type="data" format="tabular" label="Input metrics file" help="Metrics data file, with location, year, and metrics informations that can be used as interest variable."/> <param name="input_unitobs" type="data" format="tabular" label="Unitobs informations file" help="Unitobs file, with all informations available about unitobs."/> - <param name="varint" type="data_column" data_ref="input_metric" use_header_names="true" label="Interest variable from metrics file" help= "Choose the field of the interest variable."/> + <param name="varint" type="data_column" data_ref="input_metric" numerical="true" use_header_names="true" label="Response variable from metrics file" help= "Choose the field of the response variable."/> </xml> <xml name="pampa_var_GLM"> - <param name="varrep" type="select" label="Response variables" help= "Choose the response variables you want to include in your analysis." multiple="true"> + <param name="varrep" type="select" label="Explanatory variables" help= "Choose the explanatory variables you want to include in your analysis." multiple="true"> <option selected="true" value="year">Year</option> <option selected="true" value="site">Site</option> <option selected="true" value="habitat">Habitat</option>