Mercurial > repos > ecology > regionalgam_autocor_acf

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author ecology
date Thu, 20 Jun 2019 04:03:31 -0400
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b416a363a2d5 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/regionalgam commit ffe42225fff8992501b743ebe2c78e50fddc4a4e
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1 <tool id="regionalgam_autocor_acf" name="Autocorrelation test" version="@VERSION@">
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2 <description>check for temporal autocorrelation in the residuals</description>
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3 <macros>
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4 <import>regionalgam_macros.xml</import>
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5 </macros>
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6 <expand macro="rg_r_requirements"/>
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7 <command detect_errors="exit_code"><![CDATA[
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8 Rscript '$__tool_directory__/autocorr-res-acf.R'
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9 '$gls_model'
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10 '$output'
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11 '$output_res_values'
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12 ]]>
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13 </command>
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14 <inputs>
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15 <expand macro="rg_gls_model"/>
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16 </inputs>
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17 <outputs>
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18 <data format="png" name="output" from_work_dir="output-acf.png" />
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19 <data format="txt" name="output_res_values" from_work_dir="output-acf.txt" />
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="gls_model" value="s_gls_rda.rda"/>
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24 <output name="output_res_values" file="s_res.txt"/>
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25 </test>
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26 </tests>
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28 <help><![CDATA[
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29 ======================================
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30 Model residuals autocorrelation check
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31 ======================================
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33 This tool is an implementation of the autocorr-res_acf function from RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/
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35 This function uses a simple linear model and explore for temporal autocorrelation that we will account in the final model.
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37 Use a gls model and visualize autocorrelation in the residuals with the png output file.
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39 |
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41 **Outputs**
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43 The tools returns residuals visualization in an image png file, and raw values in a text file.
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44
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45 ]]></help>
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46 <expand macro="rg_citation"/>
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47 </tool>