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planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
author ecology
date Sat, 02 Dec 2023 01:50:16 +0000
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e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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1 <tool id="templates1" name="Make templates" version="0.1.0+galaxy0" profile="22.05">
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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2 <description>for core features of a data package for EML metadata creation</description>
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3 <requirements>
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4 <requirement type="package" version="4.3.1">r-base</requirement>
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5 <requirement type="package" version="3.5.5">r-emlassemblyline</requirement>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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6 </requirements>
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7 <command detect_errors="exit_code"><![CDATA[
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e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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9 Rscript
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10 '$__tool_directory__/templates1.R'
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11 '$license'
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12 '$file_type'
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e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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14 ]]></command>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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15 <inputs>
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16 <param name="license" type="select" label="Under what license are your data?">
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17 <option value="CC0">CC0</option>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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18 <option value="CCBY">CCBY</option>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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19 </param>
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20 <param name="file_type" type="select" label="What type of file do you want for templates?">
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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21 <option value=".txt">Text</option>
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22 <option value=".docx">MS Word</option>
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23 <option value=".md">Markdown</option>
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24 </param>
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25
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26 </inputs>
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27 <outputs>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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28 <collection name="output" type="list" label="Templates">
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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29 <discover_datasets pattern="__name_and_ext__"/>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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30 </collection>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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31 </outputs>
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32 <tests>
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33 <test>
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34 <param name="license" value="CCBY"/>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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35 <param name="file_type" value=".txt"/>
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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36 <output_collection name='output' type = "list" count="6"/>
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37 </test>
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38 </tests>
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39 <help><![CDATA[
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e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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41 **What it does?**
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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42 --------------------
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e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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44 This tool produce templates for core features of a data package for EML metadata.
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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45 This tool can be used before of the make eml tool.
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46
e6d531c277f6 planemo upload for repository https://github.com/galaxyecology/tools-ecology/tree/master/tools/EMLassemblyline commit ea09df299078ff13beda210b36b7edaa6a79c099
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47 **How to use it?**
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48 --------------------
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49 To use this tool, you need to select what type of license are your data under. Then you need to select the type of file you want for your templates.
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51 ]]></help>
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52 </tool>