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author | ecology |
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date | Thu, 14 Aug 2025 08:54:07 +0000 |
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<tool id="xarray_import_data" name="Xarray Import Data" version="0.1.0" profile="22.05"> <description> Import a dataset from an OPeNDAP URL and convert it to a local NetCDF file using xarray. </description> <requirements> <requirement type="package" version="2025.4.0">xarray</requirement> <requirement type="package" version="3">python</requirement> <requirement type="package" version="1.6.0">netcdf4</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/xarray_import_data.py' '$opendap_url' '$decode_times' '$decode_cf' '$output_dataset' ]]></command> <inputs> <param name="opendap_url" type="text" format="netcdf" label="OPeNDAP URL" help="OPeNDAP URL to a dataset, also see https://docs.xarray.dev/en/stable/user-guide/io.html#opendap" optional="false"> <validator type="regex" message="Type a valid url">^(https:|http:|\.)\S*</validator> </param> <param name="decode_times" type="boolean" label="Decode times" help="If true, decode time variables to datetime objects. If false, keep them as raw data." checked="true" /> <param name="decode_cf" type="boolean" label="Decode CF conventions" help="Whether to decode according to CF conventions" checked="true" /> </inputs> <outputs> <data name="output_dataset" from_work_dir="xarray_imported_data" format="netcdf" label="xarray dataset" /> </outputs> <tests> <test> <param name="opendap_url" value="http://test.opendap.org:8080/opendap/catalog/data/nc/data.nc" /> <output name="output_dataset" ftype="netcdf"> <assert_contents> <has_size min="17K" max="18K" /> </assert_contents> </output> </test> </tests> <help><![CDATA[ ================== Xarray Import Data ================== **What it does** Open a dataset from an OPeNDAP URL and convert it to a NetCDF file using xarray and netcdf4. | **How to use it** Pass a valid OPeNDAP URL to the `opendap_url` parameter. The tool will download the dataset and save it as a local NetCDF file. For big datasets consider subsetting the dataset in the url using `<URL>?var_name1[start:step:end],var_name2[start:step:end]` | **Links** https://docs.xarray.dev/en/stable/user-guide/io.html#opendap https://www.opendap.org/ ]]> </help> <citations> <citation type="doi">10.5334/jors.148</citation> </citations> </tool>