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comparison dr-disco_detect.xml @ 8:922b52cf9b35 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit b4991fb40364a975d0ea782035b930874c57665c
author erasmus-medical-center
date Thu, 14 Sep 2017 08:35:12 -0400
parents d58d99a070ce
children 3743fd602fa9
comparison
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7:6b87499054f6 8:922b52cf9b35
1 <tool id="dr_disco_detect" name="Dr. Disco (detect)" version="@TOOL_VERSION@-g0"> 1 <tool id="dr_disco_detect" name="Dr. Disco (detect)" version="@TOOL_VERSION@">
2 <description>Detects break-points in RNA-seq</description> 2 <description>Detects break-points in RNA-seq</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 6
13 --min-e-score '${min_e_score}' 13 --min-e-score '${min_e_score}'
14 '${star_discordant_alignment_fixed}' 14 '${star_discordant_alignment_fixed}'
15 '${output_fusion_events}' 15 '${output_fusion_events}'
16 ]]></command> 16 ]]></command>
17 <inputs> 17 <inputs>
18 <param name="star_discordant_alignment_fixed" type="data" format="tabular" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> 18 <param name="star_discordant_alignment_fixed" type="data" format="bam" label="Discordant alignment file of STAR (processed with dr-disco fix)" />
19 <param name="min_e_score" argument="--min-e-score" type="integer" value="8" min="0" 19 <param name="min_e_score" argument="--min-e-score" type="integer" value="8" min="0"
20 label="Minimal score to initiate pulling sub-graphs" help="Larger numbers boost performance but result in suboptimal results. Values of 8 and below are considered to be very safe (this corresponds to initiate merging already from clusters that consist of 2 or 3 reads)." /> 20 label="Minimal score to initiate pulling sub-graphs" help="Larger numbers boost performance but result in suboptimal results. Values of 8 and below are considered to be very safe (this corresponds to initiate merging already from clusters that consist of 2 or 3 reads)." />
21 </inputs> 21 </inputs>
22 22
23 <outputs> 23 <outputs>