Mercurial > repos > erasmus-medical-center > dr_disco

diff dr-disco_detect.xml @ 8:922b52cf9b35 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit b4991fb40364a975d0ea782035b930874c57665c
author erasmus-medical-center
date Thu, 14 Sep 2017 08:35:12 -0400
parents d58d99a070ce
children 3743fd602fa9
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--- a/dr-disco_detect.xml	Thu Sep 14 06:24:47 2017 -0400
+++ b/dr-disco_detect.xml	Thu Sep 14 08:35:12 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="dr_disco_detect" name="Dr. Disco (detect)" version="@TOOL_VERSION@-g0">
+<tool id="dr_disco_detect" name="Dr. Disco (detect)" version="@TOOL_VERSION@">
     <description>Detects break-points in RNA-seq</description>
     <macros>
         <import>macros.xml</import>
@@ -15,7 +15,7 @@
                 '${output_fusion_events}'
     ]]></command>
     <inputs>
-        <param name="star_discordant_alignment_fixed" type="data" format="tabular" label="Discordant alignment file of STAR (processed with dr-disco fix)" />
+        <param name="star_discordant_alignment_fixed" type="data" format="bam" label="Discordant alignment file of STAR (processed with dr-disco fix)" />
         <param name="min_e_score" argument="--min-e-score" type="integer" value="8" min="0"
                label="Minimal score to initiate pulling sub-graphs" help="Larger numbers boost performance but result in suboptimal results. Values of 8 and below are considered to be very safe (this corresponds to initiate merging already from clusters that consist of 2 or 3 reads)." />
     </inputs>