Mercurial > repos > erasmus-medical-center > dr_disco

diff dr-disco_bam-extract.xml @ 3:5348cfd3ba5c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit b6ccc6d8a9a9061207040561b494b7cf2ee3f885
author erasmus-medical-center
date Thu, 10 Aug 2017 05:38:27 -0400
parents 173ca9768e22
children 922b52cf9b35
line wrap: on
line diff
--- a/dr-disco_bam-extract.xml	Fri Apr 28 03:56:08 2017 -0400
+++ b/dr-disco_bam-extract.xml	Thu Aug 10 05:38:27 2017 -0400
@@ -1,5 +1,6 @@
 <tool id="dr_disco_bam_extract" name="Dr. Disco (bam-extract)" version="@TOOL_VERSION@-g0">
     <description>Extracts reads from two targeted regions</description>
+
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -11,14 +12,16 @@
         dr-disco bam-extract
             '$region1'
             '$region2'
+            '$input_alignment'
             '$output'
-            '$input_alignment'
     ]]></command>
+
     <inputs>
         <param name="input_alignment" type="data" format="bam" label="Discordant alignment file of STAR)" />
         <param name="region1" type="text" value="chr21:39737183-40035618" label="Genomic region 1" />
         <param name="region2" type="text" value="chr21:42834478-42882085" label="Genomic region 2" />
     </inputs>
+
     <outputs>
         <data name="output" format="bam" label="${tool.name} on ${input_alignment.name}" />
     </outputs>