Mercurial > repos > erasmus-medical-center > dr_disco
changeset 3:5348cfd3ba5c draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/dr-disco commit b6ccc6d8a9a9061207040561b494b7cf2ee3f885
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--- a/dr-disco_bam-extract.xml Fri Apr 28 03:56:08 2017 -0400 +++ b/dr-disco_bam-extract.xml Thu Aug 10 05:38:27 2017 -0400 @@ -1,5 +1,6 @@ <tool id="dr_disco_bam_extract" name="Dr. Disco (bam-extract)" version="@TOOL_VERSION@-g0"> <description>Extracts reads from two targeted regions</description> + <macros> <import>macros.xml</import> </macros> @@ -11,14 +12,16 @@ dr-disco bam-extract '$region1' '$region2' + '$input_alignment' '$output' - '$input_alignment' ]]></command> + <inputs> <param name="input_alignment" type="data" format="bam" label="Discordant alignment file of STAR)" /> <param name="region1" type="text" value="chr21:39737183-40035618" label="Genomic region 1" /> <param name="region2" type="text" value="chr21:42834478-42882085" label="Genomic region 2" /> </inputs> + <outputs> <data name="output" format="bam" label="${tool.name} on ${input_alignment.name}" /> </outputs>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/dr-disco_classify.xml Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,116 @@ +<tool id="dr_disco_classify" name="Dr. Disco (classify)" version="@TOOL_VERSION@-g0"> + <description>Classifies detected break-points in RNA-seq based on corresponding statistics and blacklists</description> + + <macros> + <import>macros.xml</import> + </macros> + + <expand macro="requirements"/> + <expand macro="version_command"/> + + <command detect_errors="exit_code"><![CDATA[ + dr-disco + classify + + ${only_valid} + + #if $blacklist_regions: + --blacklist-regions '${blacklist_regions}' + #end if + + #if $blacklist_junctions: + --blacklist-junctions '${blacklist_junctions}' + #end if + + '${dr_disco_detect_output}' + '${dr_disco_classify_output}' + ]]></command> + + <inputs> + <param name="dr_disco_detect_output" type="data" format="tabular" label="Output of Dr. Disco Detect" /> + <param name="only_valid" argument="--only-valid" truevalue="--only-valid" falsevalue="" type="boolean" /> + + <param name="blacklist_regions" argument="--blacklist-regions" type="data" format="bed" optional="True" label="Blacklist Regions" help="List of regions known to be false positives (https://github.com/yhoogstrate/dr-disco/tree/master/share/)" /> + <param name="blacklist_junctions" argument="--blacklist-junctions" type="data" format="tabular" optional="True" label="Blacklist Junctions" help="List of junctions know to be false positives (https://github.com/yhoogstrate/dr-disco/tree/master/share/)" /> + </inputs> + + <outputs> + <data name="dr_disco_classify_output" format="tabular" label="${tool.name} on ${dr_disco_detect_output.name}" /> + </outputs> + + <tests> + <test> + <param name="dr_disco_detect_output" value="classify_test_16.in.dbed" ftype="tabular" /> + <param name="only_valid" value="" /> + + <output name="dr_disco_classify_output" file="classify_test_16.test-01.out.dbed" ftype="tabular" /> + </test> + <test> + <param name="dr_disco_detect_output" value="classify_test_16.in.dbed" ftype="tabular" /> + <param name="only_valid" value="--only-valid" /> + + <output name="dr_disco_classify_output" file="classify_test_16.test-02.out.dbed" /> + </test> + + <test> + <param name="dr_disco_detect_output" value="classify_test_16.in.dbed" ftype="tabular" /> + <param name="only_valid" /> + <param name="blacklist_regions" value="blacklist-regions.hg38.bed" ftype="bed" /> + + <output name="dr_disco_classify_output" file="classify_test_16.test-03.out.dbed" ftype="tabular" /> + </test> + <test> + <param name="dr_disco_detect_output" value="classify_test_16.in.dbed" ftype="tabular" /> + <param name="only_valid" /> + <param name="blacklist_regions" value="blacklist-regions.hg38.bed" ftype="bed" /> + + <output name="dr_disco_classify_output" file="classify_test_16.test-04.out.dbed" /> + </test> + + <test> + <param name="dr_disco_detect_output" value="classify_test_16.in.dbed" ftype="tabular" /> + <param name="only_valid" /> + <param name="blacklist_junctions" value="blacklist-junctions.hg38.txt" ftype="tabular" /> + + <output name="dr_disco_classify_output" file="classify_test_16.test-05.out.dbed" ftype="tabular" /> + </test> + <test> + <param name="dr_disco_detect_output" value="classify_test_16.in.dbed" ftype="tabular" /> + <param name="only_valid" /> + <param name="blacklist_junctions" value="blacklist-junctions.hg38.txt" ftype="tabular" /> + + <output name="dr_disco_classify_output" file="classify_test_16.test-06.out.dbed" /> + </test> + + <test> + <param name="dr_disco_detect_output" value="classify_test_16.in.dbed" ftype="tabular" /> + <param name="only_valid" /> + <param name="blacklist_regions" value="blacklist-regions.hg38.bed" ftype="bed" /> + <param name="blacklist_junctions" value="blacklist-junctions.hg38.txt" ftype="tabular" /> + + <output name="dr_disco_classify_output" file="classify_test_16.test-07.out.dbed" ftype="tabular" /> + </test> + <test> + <param name="dr_disco_detect_output" value="classify_test_16.in.dbed" ftype="tabular" /> + <param name="only_valid" /> + <param name="blacklist_regions" value="blacklist-regions.hg38.bed" ftype="bed" /> + <param name="blacklist_junctions" value="blacklist-junctions.hg38.txt" ftype="tabular" /> + + <output name="dr_disco_classify_output" file="classify_test_16.test-08.out.dbed" /> + </test> + </tests> + + <help><![CDATA[ + +**What it does** + + + +**Attributions** + +This work is part of Youri Hoogstrate's PhD thesis. + + ]]></help> + + <expand macro="citations"/> +</tool> \ No newline at end of file
--- a/dr-disco_detect.xml Fri Apr 28 03:56:08 2017 -0400 +++ b/dr-disco_detect.xml Thu Aug 10 05:38:27 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="dr_disco_intronic" name="Dr. Disco (intronic)" version="@TOOL_VERSION@-g0"> +<tool id="dr_disco_detect" name="Dr. Disco (detect)" version="@TOOL_VERSION@-g0"> <description>Detects break-points in RNA-seq</description> <macros> <import>macros.xml</import> @@ -11,8 +11,8 @@ dr-disco detect --min-e-score '${min_e_score}' - '${table_fusion_events}' '${star_discordant_alignment_fixed}' + '${output_fusion_events}' ]]></command> <inputs> <param name="star_discordant_alignment_fixed" type="data" format="bam" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> @@ -21,7 +21,7 @@ </inputs> <outputs> - <data name="table_fusion_events" format="tabular" label="${tool.name} on ${$star_discordant_alignment_fixed.name}" /> + <data name="output_fusion_events" format="tabular" label="${tool.name} on ${star_discordant_alignment_fixed.name}" /> </outputs> <tests> @@ -29,7 +29,7 @@ <param name="star_discordant_alignment_fixed" value="detect.bam" /> <param name="min_e_score" value="8" /> - <output name="table_fusion_events" file="detect.txt" /> + <output name="output_fusion_events" file="detect.txt" /> </test> </tests>
--- a/dr-disco_fix.xml Fri Apr 28 03:56:08 2017 -0400 +++ b/dr-disco_fix.xml Thu Aug 10 05:38:27 2017 -0400 @@ -8,11 +8,15 @@ <expand macro="version_command" /> <command detect_errors="exit_code"><![CDATA[ - dr-disco fix '${alignment_fixed}' '${star_discordant_alignment}' + dr-disco fix + '${star_discordant_alignment}' + '${alignment_fixed}' ]]></command> + <inputs> <param name="star_discordant_alignment" type="data" format="bam" label="Discordant alignment file of STAR" /> </inputs> + <outputs> <data name="alignment_fixed" format="bam" label="${tool.name} on ${star_discordant_alignment}" /> </outputs>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/dr-disco_integrate.xml Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,57 @@ +<tool id="dr_disco_integrate" name="Dr. Disco (intronic)" version="@TOOL_VERSION@-g0"> + <description>Merges corresponding genomic breaks and exon-to-exon junctions</description> + <macros> + <import>macros.xml</import> + </macros> + + <expand macro="requirements"/> + <expand macro="version_command"/> + + <command detect_errors="exit_code"><![CDATA[ + dr-disco + integrate + #if $gtf: + --gtf ${gtf} + #end if + + '${dr_disco_classify_output}' + '${dr_disco_integrate_output}' + ]]></command> + + <inputs> + <param name="dr_disco_classify_output" type="data" format="bam" label="Discordant alignment file of STAR (processed with dr-disco fix)" /> + <param argument="--gtf" type="data" format="gtf" optional="True" label="GTF file (Optional: for predicting frame shifts)" help="This GTF file requires the following attributes annotated: gene_name, transcript_id and transcript_version"/> + </inputs> + + <outputs> + <data name="dr_disco_integrate_output" format="tabular" label="${tool.name} on ${dr_disco_classify_output.name}" /> + </outputs> + + <tests> + <test> + <param name="dr_disco_classify_output" value="integrate_test_terg_s041.in.dbed" /> + <param name="gtf" value="integrate_tmprss-erg.hg38.gtf" /> + + <output name="dr_disco_integrate_output" file="integrate_test_terg_s041.out.txt" /> + </test> + <test> + <param name="dr_disco_classify_output" value="integrate_test_terg_s041.in.dbed" /> + <param name="gtf" value="integrate_tmprss-erg.hg38.gtf" /> + + <output name="dr_disco_integrate_output" file="integrate_test_terg_s041.out.no-gtf.txt" /> + </test> + </tests> + + <help><![CDATA[ + +**What it does** + + +**Attributions** + +This work is part of Youri Hoogstrate's PhD thesis. + + ]]></help> + + <expand macro="citations"/> +</tool> \ No newline at end of file
--- a/macros.xml Fri Apr 28 03:56:08 2017 -0400 +++ b/macros.xml Thu Aug 10 05:38:27 2017 -0400 @@ -1,12 +1,12 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="0.6.0">dr-disco</requirement> + <requirement type="package" version="0.9.0">dr-disco</requirement> <yield/> </requirements> </xml> - <token name="@TOOL_VERSION@">0.6.0</token> + <token name="@TOOL_VERSION@">0.9.0</token> <xml name="version_command"> <version_command>dr-disco --version | head -n 1</version_command>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blacklist-junctions.hg38.txt Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,992 @@ +chr-A pos-A direction-A chr-B pos-B direction-B id comment +chr10 10919999 10920000 - chr10 11165485 11165486 + s11324,s11386,s13304,s13768,s14437,s14455,s15679,s18020,s18730,s18751,s18758,s5960,s5961,s6408,s7310,s7431,s8612,s8615,s8828,s8971,s9067,s9578 +chr10 126970701 126970702 + chr10 127127764 127127765 - s4845,s6411,s6729,s6730,s6731,s7247,s10010,s11325,s11326,s11338,s11354,s11355,s11364,s11368,s11370,s11374,s11375,s11377,s11378,s11385,s11391,s11393,s11394,s11402,s11743,s11745,s11750,s11754,s11818,s13297,s13298r1,s13298r2,s13299r1,s13308,s13311,s13358,s13418,s13419,s13420,s13422,s13424,s13623,s13749,s13752,s13754,s13761,s13769,s14432,s14441,s14447,s14455,s14460,s14461,s15679,s15680,s15681,s18017,s18024,s18031,s18037,s18255,s18734,s18754,s20343,s20345,s20401,s20403,s20404,s4841,s4847,s4953,s4955,s4970,s5933,s5934,s5938,s5946,s5948,s5954,s5960,s5961,s6733,s7220,s7239,s7316,s7321,s7431,s8611,s8614,s8615,s8620,s8652,s8660,s8832,s8984,s9067,s9544,s9568,s9578,s9579,s9592,s9596,s9599,s9606,s9754,s9755,s9757,s9758,s9761,s9772,s9844 +chr10 126970701 126970702 + chr10 127257429 127257430 - prtcl/014,024,032 +chr10 17548348 17548349 + chr12 85726659 85726660 - s11744,s6729,s6730,s10011,s11324,s11355,s11383,s11386,s13297,s13298r1,s13298r2,s13306,s13428,s13626,s13749,s14460,s15681,s18017,s18020,s18031,s18037,s18151,s18758,s18759,s4970,s5942,s5947,s6727r1,s8652,s8965,s8984,s9004,s9544,s9568,s9585,s9761,s9775 +chr10 19790186 19790187 - chr10 20001774 20001775 + s6046,s11361,s11378,s11402,s11817,s13312,s13629,s13771,s14441,s18749,s5946,s5954,s5964,s9541,s9755,s9844 +chr10 27486892 27486967 - chr12 11038658 11038787 - s9759,s13307,s6408,s18022,s9064,s8982,s11377,s18037,s13629,s7428,s13424,s6732,s10014,s11326,s7217,s6729,s5954,s7250,s9757,s11367,s11402,s11375,s9597,s14461,s13428,s9754,s7240,s13421,s5947,s9589,s11355,s13299r2,s11384,s8830,s13299r1,s11750,s11745,s9568 +chr10 34516993 34517160 - chr10 34814875 34814896 + s13749,s13770,s9757,s8828,s4845,s6411,s6731,s7247,s7248,s10011,s10014,s11364,s11377,s11384,s13296,s13428,s14437,s18020,s18022,s18031,s18037,s5942,s5945,s5948,s6413,s6727r1,s7426,s8652,s8965,s8977,s8984,s9064,s9575,s9585,s9592,s9772 +chr10 38021018 38021427 - chr10 42628376 42628399 - s11391,s8978,s13312,s11359,s13426,s9582,s11326,s8981,s11760,s5961,s10010,s9757,s8652,s8971,s13307,s11743,s9761,s18017,s11368,s14461,s9575,s11383,s11386,s6046,s6411,s10011,s11324,s11325,s11338,s11354,s11355,s11360,s11364,s11365,s11367,s11375,s11378,s11380,s11384,s11385,s11397,s11402,s11745,s11750,s11751,s11762,s13296,s13297,s13298r1,s13298r2,s13299r1,s13310,s13311,s13422,s13622,s14447,s14455,s14460,s15680,s15681,s18024,s18031,s18037,s18748,s18749,s18759,s4953,s5938,s6727r1,s7314,s7321,s8660,s8977,s8980,s9004,s9541,s9568,s9578,s9596 +chr10 38021484 38021496 + chr10 42628291 42628315 + s9597,s8830,s11402,s13312,s9758,s11760,s11342,s11380,s13306,s13311,s18024,s18037,s6720,s7318,s8612,s9757,s6418,s20405,s11324 +chr10 50433475 50433476 + chr10 50590247 50590248 - SGMS1 large circular (1) s6046,s6729,s6730,s7247,s7250,s11338,s11341,s11355,s11393,s11762,s13304,s13308,s13416,s13420,s13633,s13749,s13768,s13769,s13771,s14436,s14439,s18151,s18751,s20400,s4841,s4954,s5948,s6408,s6409,s6413,s7240,s8611,s8614,s8615,s8616,s8622,s8828,s8965,s9064,s9067,s9575,s9584,s9596,s9597,s9606,s9608,s9755,s9757,s9758,s9761 +chr10 50460672 50460673 + chr10 50590247 50590248 - SGMS1 large circular (2) s6731,s11342,s11383,s13298r1,s13426,s14432,s18730,s5954,s5960,s7431,s9578 +chr10 52193235 52193236 + chr10 52350007 52350008 - SGMS1 large circular (3) prtcl/043 +chr10 60279639 60279640 - chr10 60733262 60733263 + prtcl/007,011,015,019,025,026,039,125,147 +chr10 75438413 75438495 - chr10 76036007 76036008 + s18730,s11750,s13358,s8616,s14441,s18170,s6411,s6729,s6730,s6731,s7247,s7250,s11324,s11326,s11337,s11359,s11364,s11366,s11377,s11386,s11393,s11402,s11750,s11751,s11754,s11764,s13298r1,s13298r2,s13302,s13311,s13358,s13416,s13418,s13426,s13427,s13428,s13622,s13749,s13752,s13755,s13770,s14432,s14435,s14436,s14441,s15679,s18020,s18022,s18031,s18037,s18170,s18730,s18758,s20401,s4847,s4955,s4970,s4975,s5930,s5961,s6016,s6409,s6720,s6721,s6727r1,s6733,s7217,s7314,s7316,s7318,s7321,s7427,s7427r2,s7428,s7431,s7454,s8614,s8615,s8616,s8623,s8660,s8828,s8971,s8977,s9004,s9064,s9065,s9544,s9571,s9575,s9578,s9584,s9592,s9606,s9608,s9755,s9757,s9758,s9761,s9772,s9775,s9777,s9844,s9845 +chr10 77404023 77404024 - chr10 77637264 77637265 + prtcl/008,014,025,026,033,125,143 +chr11 96093517 96093518 - chr11 96342907 96342908 + prtcl/015,038,147,151 +chr12 23896024 23896027 - chr12 24213342 24277241 + SOX5-SOX5 (1) s11324,s11340,s11354,s11355,s11361,s11366,s11368,s11375,s11378,s11385,s11393,s11397,s11399,s11402,s11745,s11756,s11760,s11762,s11817,s13296,s13307,s13310,s13312,s13416,s13419,s13626,s13629,s13631,s13633,s13768,s13770,s14434,s14436,s14441,s14442,s14447,s14455,s14460,s15679,s18020,s18022,s18024,s18031,s18037,s18749,s18751,s18758,s20401,s20404,s20405,s4951,s4955,s4970,s5938,s6408,s6409,s6411,s6413,s6418,s6730,s7241,s7247,s7310,s7314,s7431,s7433r2,s7454,s8614,s8615,s8618,s8623,s8828,s8832,s8971,s8977,s9063,s9064,s9067,s9464,s9541,s9575,s9578,s9596,s9597,s9754,s9755,s9757,s9758,s9761 +chr1 243270091 243270092 + chr1 243426558 243426559 - SDCCAG8 large circular (1) s11751,s13622,s13761,s13768 +chr1 243293090 243293091 + chr1 243426558 243426559 - SDCCAG8 large circular (2) s6411,s7247,s7248,s7250,s11338,s11355,s11365,s11754,s11819,s13296,s13297,s13299r2,s13422,s13426,s13428,s13623,s13625,s13768,s14437,s14442,s18020,s18024,s18037,s18151,s18748,s18751,s20343,s20344,s5960,s6408,s7431,s7433r2,s8615,s8622,s8830,s8832,s8965,s9063,s9064,s9066,s9544,s9575,s9578,s9579,s9596,s9608,s9761 +chr1 243304712 243304713 + chr1 243426558 243426559 - SDCCAG8 large circular (3) s6730,s6731,s11751,s11820,s13307,s13622,s13626,s14432,s18022,s5961,s7211,s8616,s9585,s9755 +chr1 243307988 243307989 + chr1 243426558 243426559 - SDCCAG8 large circular (4) s13629,s4958,s6733 +chr1 243316754 243316755 + chr1 243426558 243426559 - SDCCAG8 large circular (5) s11324,s11365,s13296,s13631,s14442,s14460,s18730,s18749 +chr1 243512323 243512324 + chr1 243695716 243695717 - AKT3 large circular (1) +chr1 243512323 243512324 + chr1 243843282 243843283 - AKT3 large circular (2) +chr1 243545509 243545510 + chr1 243695716 243695717 - AKT3 large circular (3) +chr1 243545509 243545510 + chr1 243843282 243843283 - AKT3 large circular (4) +chr1 243552728 243552729 + chr1 243843282 243843283 - AKT3 large circular (5) +chr1 243563719 243563720 + chr1 243843282 243843283 - AKT3 large circular (6) +chr1 243572925 243572926 + chr1 243843282 243843283 - AKT3 large circular (7) +chr1 243613670 243613671 + chr1 243843282 243843283 - AKT3 large circular (8) +chr1 243637610 243637611 + chr1 243843282 243843283 - AKT3 large circular (9) +chr1 243645892 243645893 + chr1 243843282 243843283 - AKT3 large circular (10) +chr1 243664771 243664772 + chr1 243843282 243843283 - AKT3 large circular (11) +chr1 243683196 243683197 + chr1 243843282 243843283 - AKT3 large circular (12) +chr1 243695590 243695591 + chr1 243843282 243843283 - AKT3 large circular (13) +chr12 66596927 66596928 - chr12 67069049 67069050 + s6729,s6730,s10011,s10014,s11326,s11338,s11365,s11751,s13298r1,s13298r2,s13299r1,s13311,s13418,s13622,s14436,s18020,s18022,s18031,s18037,s4841,s6016,s6727r1,s8652,s8830,s8965,s8977,s9064,s9464,s9575,s9592,s9608 +chr12 70286837 70286838 + chr12 70288280 70288281 + s6729,s10011,s11365,s11391,s13310,s13625,s14461,s15679,s18759,s7239,s8982,s9575,s9758 +chr12 77572266 77572267 - chr12 77940318 77940319 + s11355,s11365,s11370,s11377,s11391,s11394,s11762,s13304,s13306,s13308,s13419,s13422,s13623,s13626,s13629,s13631,s13768,s14434,s18017,s18022,s18024,s18037,s18259,s18734,s18748,s18751,s18758,s18759,s20342,s7239,s7318,s8615,s8622,s9062,s9063,s9066,s9575,s9608 +chr12 94582538 94582539 - chr12 94818089 94818090 + s4845,s4845r2,s6730,s6731,s7247,s10011,s11326,s11354,s13299r1,s13419,s13420,s13768,s14461,s18020,s18748,s20345,s20400,s4847,s5954,s5961,s6408,s6413,s8611,s8614,s8622,s8965,s8984,s9758,s9775 +chr12 94582538 94582539 - chr12 94873639 94873640 + 13418,s13761,s13771,s14434a +chr13 107210755 107210756 - chr13 107865681 107865682 + FAM155A-FAM155A (1) s4845R,s6046R,s6411R,s6729R,s6731R,s7247R,s7248R,s7249R,s7250R,s10011,s11325,s11326,s11338,s11342,s11355,s11365,s11377,s11378,s11384,s11385,s11386,s11750,s11751,s11754,s11760,s11817,s11820,s13304,s13306,s13307,s13308,s13310,s13358,s13422,s13426,s13428,s13619,s13622,s13629,s13752,s13755,s13771,s14432,s14434,s14436,s14437,s14439,s14441,s14442,s14460,s14461,s15681,s18020,s18022,s18024,s18031,s18037,s18730,s18748,s18754,s18758,s18759,s4847,s4951,s4970,s4975,s5930,s5933,s5938,s5948,s5954,s5961,s6016,s6408,s6409,s6413,s6684,s6722,s6733,s7217,s7220,s7239,s7240,s7316,s7428,s7431,s8608,s8612,s8614,s8615,s8618,s8622,s8623,s8660,s8830,s8977,s8980,s8981,s8982,s9004,s9063,s9066,s9464,s9473,s9575,s9578,s9584,s9589,s9592,s9596,s9599,s9606,s9608,s9754,s9755,s9758,s9761,s9772,s9775 +chr13 39343715 39344055 - chr13 39600830 39600887 + LHFP-LHFP (1) s6018,s4955,s7239,s13771,s13428,s13310,s11750,s11337,s13426,s11364,s9845,s13631,s18170,s8623,s13752,s18259,s7426,s8620,s13302,s13308,s11393,s5950,s9592,s13418,s4083R,s11762,s13296,s18751,s4951,s5947,s6406,s9575,s9775 +chr13 39378421 39378527 - chr13 39600831 39600844 + LHFP-LHFP (2) s9761,s9592,s8971,s13761,s13304,s11324,s13298r1,s13421,s13749,s14437,s14442,s15679,s18020,s18037,s4955,s4975,s5961,s6722,s74092,s7431,s74332,s8612,s8828,s9064,s9571,s9579,s9757 +chr13 96091569 96091570 - chr13 96832489 96832490 + HS6ST3-HS6ST3 (1) s6046,s7249,s11338,s11360,s11361,s11364,s11365,s11375,s11394,s11397,s11760,s11818,s11820,s13299r1,s13299r2,s13304,s13307,s13308,s13312,s13358,s13418,s13419,s13424,s13426,s13427,s13631,s13754,s13768,s13769,s13771,s14434,s14436,s15680,s15681,s18022,s18031,s18748,s18749,s18751,s18759,s20401,s20405,s4951,s4953,s4954,s4957,s4958,s5947,s6721,s7239,s7241,s8608,s8612,s8614,s8615,s8616,s8965,s8977,s9063,s9464,s9473,s9541,s9575,s9579,s9582,s9608,s9759 +chr14 105588190 105588412 - chr14 105708681 106810491 + s18022,s11324,s5961,s5930,s7321,s11355,s11324,s11324,s7247R,s7427,s7427r2,s7247R,s74092,s7321,s14441,s7321,s13304,s13426,s7321,s8660,s6406,s8614,s8828,s11341,s18017,s11354,s13311,s8828,s6731,s7427,s7427r2,s7321,s8828,s6018,s7247R,s9579,s6406,s11326,s5954,s7431,s8611,s4954,s13755,s8618,s74332,s7321,s13629,s13311,s13626,s8965,s6406,s11386 +chr14 105625872 105865458 - chr14 105860433 106851320 + s14437,s7321,s8830,s4847,s11386,s6413,s4845r2,s4845,s9578,s11750,s8832,s7321,s4847,s4847,s74092,s11338,s14442,s6413,s6413,s74092,s9579,s6409,s8614,s6409,s6731,s14437,s7217,s18020,s18017,s11743,s13416,s6730R,s11355,s13633,s13419,s8615,s11750,s6730,s8618,s9544,s7310,s8615,s8616,s7321,s5954,s9757,s13755,s8660,s7321,s8620,s11750,s8980,s11324,s18758,s4847,s11324,s13311,s8965,s9578,s8830,s13416,s8618,s14442,s8828,s13311,s74092,s7427,s7427r2,s6730R,s15681,s74092,s13298r1,s7427,s7427r2,s13755,s7431,s7427,s7427r2,s6722,s6413,s11341,s5934,s4954,s5934,s13420,s5934,s7310,s11341,s8660,s9775,s13754,s13768,s4958,s9772,s11326,s9064,s6406,s7247,s5934,s6406,s6413,s14437,s6729,s11818,s5948,s13749,s6727r1,s18007,s7321,s13428,s11394,s13299r1,s14442,s13299r1,s7247R,s8660,s74092,s6729R,s9063,s4958,s14455,s4958,s9589,s4958,s8607,s11326,s7217,s11324,s6730,s5950,s18024,s11818,s9597,s13299r1,s7250,s9758,s7426,s9772,s6731,s8979,s4845,s9775,s6722 +chr14 20343075 20343409 - chr14 49586570 49586875 + +chr14 20343075 20343409 - chr14 49586570 49586875 - prtcl/303 +chr14 20343075 20343409 + chr14 49586570 49586875 + prtcl/355 +chr14 20343075 20343409 - chr14 49862552 49862850 - +chr14 20343075 20343409 + chr14 49862552 49862850 - prtcl/345 +chr14 20343075 20343409 - chr14 49862552 49862850 + prtcl/416,349,329 +chr14 25919546 25919547 - chr14 26126156 26126157 + new gene s6046,s11338,s11369,s11370,s11383,s11391,s11399,s11402,s11754,s13312,s13416,s13420,s13761,s13768,s18758,s20345,s7241,s7314,s7318,s8971,s9842,s9845 +chr14 29725674 29725675 - chr14 29926965 29926966 + prtcl/007,016,024,032,033,038,141,147 +chr14 29725674 29725675 - chr14 29927248 29927249 + prtcl/005,006,008,011,021,025,036,039,143 +chr14 33055904 33055905 + chr14 33215426 33215427 - NPAS3 large circular (1) s6411 +chr14 33215181 33215182 + chr14 33367268 33367269 - NPAS3 large circular (3) s7248,s11324,s11338,s13304,s13424,s13768,s14439,s5954,s8623,s8828,s9585,s9592,s9606,s9755,s9847 +chr14 33215181 33215182 + chr14 33560210 33560211 - NPAS3 large circular (2) s13304 +chr1 43593627 43593628 - chr1 43594215 43594216 - s4845,s6046,s6411,s6729,s6730,s6731,s7248,s7250,s10010,s10011,s10014,s11324,s11325,s11326,s11336,s11338,s11340,s11341,s11342,s11354,s11355,s11359,s11360,s11361,s11364,s11365,s11366,s11369,s11370,s11374,s11375,s11377,s11380,s11383,s11384,s11385,s11391,s11393,s11394,s11397,s11399,s11402,s11743,s11744,s11745,s11751,s11754,s11756,s11820,s13296,s13297,s13298r1,s13298r2,s13299r1,s13299r2,s13302,s13304,s13306,s13307,s13308,s13310,s13311,s13312,s13358,s13416,s13418,s13419,s13420,s13421,s13422,s13426,s13427,s13428,s13625,s13626,s13629,s13633,s13749,s13752,s13768,s14432,s14434,s14435,s14436,s14439,s14441,s14447,s14455,s14460,s14461,s15679,s15681,s18017,s18020,s18022,s18024,s18031,s18170,s18748,s18749,s18751,s18754,s18759,s20401,s20403,s4836,s4841,s4951,s4953,s4954,s4955,s4957,s4958,s4970,s5933,s5934,s5938,s5942,s5945,s5946,s5947,s5950,s5956,s6016,s6018,s6406,s6408,s6409,s6413,s6719,s6720,s6722,s6727r1,s7220,s7239,s7240,s7310,s7314,s7318,s7321,s74092,s7426,s7428,s7431,s74332,s7454,s8611,s8616,s8618,s8622,s8652,s8830,s8832,s8965,s8977,s8978,s8979,s8980,s8982,s8984,s9001,s9004,s9064,s9066,s9541,s9544,s9568,s9571,s9575,s9579,s9585,s9589,s9597,s9608,s9755,s9757,s9758,s9759,s9761,s9772,s9844,s9845 +chr14 42980422 42980423 - chr14 43185163 43185164 + new gene s11338,s11342,s11359,s11360,s11377,s11378,s11380,s11402,s11744,s11745,s11820,s13304,s13306,s13308,s13424,s13426,s13427,s13631,s13752,s13755,s13770,s14437,s14439,s15679,s18007,s18151,s18748,s18754,s18758,s20400,s4953,s4954,s5947,s5964,s6418,s7239,s7241,s7314,s7318,s7454,s8607,s8614,s8618,s8971,s8977,s9001,s9544,s9596,s9599,s9608 +chr14 43185223 43185224 - chr14 43473045 43473046 + new gene s6046,s11337,s11366,s11380,s11383,s11385,s11399,s11402,s11745,s11754,s11764,s11820,s13307,s13358,s13426,s13633,s13755,s14434,s14436,s14455,s15681,s18170,s20400,s5947,s5960,s6418,s7310,s7318,s7454,s8618,s8828,s8977,s9001,s9544,s9578,s9608 +chr14 71413947 71413948 + chr14 71529370 71529371 - s10014,s13311,s13622,s13749,s14435,s14439,s5934,s6729,s6730,s6731,s7247,s7248,s7250,s7316,s8611,s8612,s8618,s8623,s9064,s9585,s9592,s9606,s9775 +chr14 79697629 79697630 + chr14 79805190 79805191 - prtcl/025,038,140 +chr15 39071608 39071609 - chr15 39420543 39420544 + prtcl/015,141,143,147,149 +chr15 60678686 60678687 - chr15 61229052 61229053 + prtcl/004,005,006,007,011,014,016,020,021,025,026,032,037,039,040,125,145,147,149 +chr15 71411700 71411830 - chr15 71660520 71660615 + prtcl/038,145,005,039,147,143,125,014,020,035,037,149 +chr1 61088148 61088149 + chr1 61277585 61277586 - circular>1mb s13768,s14432,s14436,s5960,s7318,s74092,s8616,s8828,s9066,s9067,s9596,s9761,s9844 +chr1 61088148 61088149 + chr1 61359274 61359275 - circular>1mb s8618,s9579 +chr16 11020192 11020193 + chr16 11126146 11126147 - prtcl/021,031,037,125 +chr16 78432752 78432753 - chr16 78779328 78779329 + s8971,s11754,s8971,s10011,s11324,s11326,s11336,s11341,s11342,s11355,s11359,s11365,s11368,s11370,s11374,s11377,s11380,s11383,s11384,s11385,s11391,s11399,s11744,s11750,s11751,s11754,s11760,s13296,s13297,s13298r2,s13299r1,s13299r2,s13304,s13418,s13420,s13424,s13427,s13619,s13622,s13625,s13629,s13631,s13632,s13633,s13749,s13755,s13768,s13770,s13771,s14432,s14434,s14435,s14437,s14441,s14442,s14455,s14461,s15680,s15681,s18017,s18020,s18022,s18037,s18259,s18730,s18749,s18751,s18758,s18759,s20345,s20401,s20405,s4836,s4841,s4845,s4951,s4955,s4958,s4970,s4975,s5938,s5942,s5946,s5947,s5948,s5950,s5954,s5964,s6018,s6046,s6408,s6409,s6411,s6413,s6418,s6684,s6722,s6729,s6730,s6731,s7240,s7241,s7247,s7248,s7249,s7250,s7314,s7321,s74092,s7427,s7427r2,s7428,s7431,s7454,s8607,s8612,s8615,s8616,s8618,s8622,s8623,s8660,s8830,s8832,s8965,s8971,s8978,s8980,s8981,s8982,s8984,s9004,s9063,s9064,s9065,s9066,s9464,s9568,s9571,s9575,s9578,s9579,s9585,s9596,s9606,s9758,s9772,s9775,s9842,s9844,s9845,s9847 +chr16 78432752 78432753 - chr16 79211607 79211608 + WWOX-WWOX (1) s4845,s6046,s6411,s6729,s6730,s6731,s7247,s7248,s7249,s7250,s10011,s11324,s11326,s11336,s11341,s11342,s11355,s11359,s11365,s11368,s11370,s11374,s11377,s11380,s11383,s11384,s11385,s11391,s11399,s11744,s11750,s11751,s11754,s11760,s13296,s13297,s13298r2,s13299r1,s13299r2,s13304,s13418,s13420,s13424,s13427,s13619,s13622,s13625,s13629,s13631,s13632,s13633,s13749,s13755,s13768,s13770,s13771,s14432,s14434,s14435,s14437,s14441,s14442,s14455,s14461,s15680,s15681,s18017,s18020,s18022,s18037,s18259,s18730,s18749,s18751,s18758,s18759,s20345,s20401,s20405,s4836,s4841,s4951,s4955,s4958,s4970,s4975,s5938,s5942,s5946,s5947,s5948,s5950,s5954,s5964,s6018,s6408,s6409,s6413,s6418,s6684,s6722,s7240,s7241,s7314,s7321,s74092,s7427,s7427r2,s7428,s7431,s7454,s8607,s8612,s8615,s8616,s8618,s8622,s8623,s8660,s8830,s8832,s8965,s8971,s8978,s8980,s8981,s8982,s8984,s9004,s9063,s9064,s9065,s9066,s9464,s9568,s9571,s9575,s9578,s9579,s9585,s9596,s9606,s9758,s9772,s9775,s9842,s9844,s9845,s9847 +chr16 82627001 82627138 - chr16 83032009 83032132 + CDH13 missing exon (1) s8978,s8611,s9597,s7248,s13761,s13424,s6728,s11366,s5933,s7310,s13428,s9772,s14436,s7240,s11745,s11370,s4951,s7241,s13622,s13304,s14437,s10011,s13306,s15681,s6727r1,s6406,s6731,s11378,s7314,s9844,s8616,s9544,s11364,s11393,s18037,s9001,s13633,s5956,s8965,s9845,s13771,s8607 +chr16 82627045 82627138 - chr16 82858361 82858451 + CDH13 missing exon (2) s13622,s14439,s4975,s8614,s11354,s7426,s74332,s8832,s8623 +chr16 85357643 85357644 - chr16 85648551 85648552 + prtcl/006,013,020,025,125 +chr18 4151282 4151283 - chr18 4455005 4455006 + prtcl/001,003,004,005,007,008,011,013,014,015,016,019,020,021,022,025,032,033,035,036,037,038,039,125,141,143,145,147,149 +chr18 58044532 58044709 - chr18 58245426 58245442 + prtcl/147,007,039 +chr18 7567891 7567892 - chr18 7774148 7774149 + prtcl/003,015,020 +chr1 92563641 92563642 + chr1 92704744 92704745 - prtcl/008,015,026,032,040 +chr20 14002330 14085729 - chr20 14684842 14684924 + MACROD2-MACROD2 (1) s0405,s063,s1340,s1369,s1394,s1399,s1402,s239,s310,s318,s3296,s3297,s3629,s4442,s614,s622,s719,s7247,s727r1,s8037,s8170,s8749,s982 +chr20 53256404 53256445 - chr20 53487143 53487287 + TSHZ2-TSHZ2 s10011,s11324,s11325,s11326,s11338,s11341,s11355,s11370,s11375,s11385,s11386,s11393,s11743,s11762,s13296,s13304,s13306,s13308,s13310,s13311,s13358,s13416,s13419,s13420,s13421,s13422,s13625,s13626,s13631,s13633,s13749,s13766,s13768,s13770,s14434,s14436,s14437,s14447,s14455,s14460,s15679,s15680,s18017,s18020,s18022,s18031,s18037,s18151,s18259,s18730,s18754,s18758,s20342,s20401,s20403,s4833,s4836,s4845,s4951,s4953,s4955,s4957,s4970,s5930,s5938,s5942,s5947,s5948,s5954,s5960,s5961,s6018,s6046,s6408,s6409,s6413,s6684,s6722,s6727r1,s6729,s6730,s6731,s6732,s6733,s7211,s7238,s7241,s7247,s7248,s7250,s7310,s7409r2,s7428,s7431,s7433r2,s8611,s8612,s8614,s8615,s8616,s8618,s8622,s8623,s8652,s8828,s8832,s8965,s8971,s9063,s9064,s9065,s9066,s9067,s9473,s9568,s9575,s9578,s9579,s9584,s9585,s9597,s9757,s9758,s9761,s9775 +chr20 8132750 8132751 - chr20 8371381 8371382 + PLCB1-PLCB1 (1) prtcl/025,026 +chr20 8150371 8150372 - chr20 8371381 8371382 + PLCB1-PLCB1 (1) prtcl/001,004,024 +chr20 8371450 8371451 - chr20 8628293 8628294 + PLCB1-PLCB1 (1) 031,152,141 +chr21 26001836 26001837 - chr21 26002391 26002392 - s4833,s4845,s6411,s6729,s6730,s7247,s7248,s7250,s10010,s10011,s10014,s11337,s11354,s11355,s11357,s11360,s11361,s11364,s11366,s11367,s11377,s11380,s11385,s11386,s11391,s11393,s11394,s11402,s11743,s11744,s11750,s11751,s11754,s11756,s11760,s13296,s13298r1,s13298r2,s13299r1,s13302,s13307,s13308,s13310,s13311,s13416,s13421,s13424,s13427,s13428,s13623,s13625,s13626,s13633,s13749,s14434,s14447,s14455,s14460,s15679,s15680,s15681,s18020,s18751,s18754,s18759,s20345,s20401,s20405,s4841,s4951,s4953,s4975,s5938,s5947,s5950,s5961,s6408,s6409,s6418,s6720,s6727r1,s6733,s7211,s7217,s7238,s7241,s7310,s7316,s7318,s7431,s7433,s7454,s8611,s8612,s8616,s8622,s8623,s8652,s8660,s8832,s8965,s8971,s8977,s8978,s8979,s8982,s8984,s9001,s9064,s9065,s9544,s9578,s9597,s9757,s9758 +chr21 26001843 26001844 + chr21 26002385 26002386 + s4833,s4845,s6411,s6729,s6730,s6731,s7247,s7248,s7250,s10010,s10011,s10014,s11324,s11325,s11326,s11337,s11338,s11342,s11354,s11355,s11359,s11360,s11361,s11364,s11366,s11367,s11368,s11369,s11370,s11374,s11375,s11377,s11378,s11380,s11383,s11384,s11385,s11386,s11391,s11394,s11397,s11399,s11402,s11743,s11744,s11745,s11750,s11751,s11754,s11756,s11760,s11762,s11764,s11818,s11820,s13297,s13298r1,s13298r2,s13299r1,s13299r2,s13302,s13304,s13306,s13307,s13308,s13310,s13311,s13312,s13416,s13418,s13419,s13420,s13421,s13422,s13424,s13426,s13427,s13428,s13619,s13622,s13623,s13625,s13629,s13631,s13633,s13749,s13768,s13770,s14432,s14434,s14436,s14437,s14439,s14441,s14442,s14447,s14455,s14460,s14461,s15679,s15680,s15681,s18017,s18020,s18024,s18031,s18037,s18151,s18170,s18259,s18730,s18734,s18748,s18749,s18751,s18754,s18758,s18759,s20400,s20401,s20403,s20405,s4841,s4953,s4954,s4955,s4957,s4958,s4970,s4975,s5930,s5932,s5933,s5938,s5942,s5945,s5947,s5948,s5954,s5960,s6016,s6406,s6408,s6409,s6418,s6684,s6719,s6720,s6722,s6727r1,s6727r2,s6728,s6732,s7217,s7220,s7239,s7241,s7310,s7314,s7316,s7318,s7321,s7409,s7428,s7431,s7433,s8611,s8612,s8614,s8615,s8616,s8620,s8652,s8660,s8828,s8830,s8965,s8971,s8977,s8978,s8979,s8980,s8981,s8982,s8984,s9001,s9004,s9063,s9064,s9066,s9067,s9473,s9541,s9568,s9575,s9578,s9579,s9585,s9589,s9592,s9597,s9606,s9608,s9754,s9755,s9757,s9758,s9759,s9761,s9772,s9775,s9777,s9844,s9845 +chr21 35580929 35580930 - chr21 35814945 35814946 + s18017,s18031,s6018,s7220,s9575,s9579,s7248,s10011,s18031,s6722,s7321,s9568,s9758,s9777 +chr2 13609161 13609162 - chr2 13837689 13837690 + prtcl/001,003,004,005,006,007,008,011,013,015,016,019,020,022,024,025,032,033,036,037,038,039,125,141,143,145,147,149 +chr2 138299537 138299538 - chr2 138500754 138500755 + prtcl/006,014,022,024,036,143,147,151 +chr2 186215090 186215091 - chr2 186456714 186456715 + prtcl/003,004,011,015,019,022,024,025,032,036,037,125,143,145 +chr2 197805339 197805340 - chr2 198088857 198088858 + PLCL1-PLCL1 (1) prtcl/006,014,024 +chr22 22026122 22713198 - chr22 22893779 22922721 + interesting-region s4083,s4845,s6411,s6730,s6731,s7247,s7250,s10010,s10011,s10014,s11324,s11325,s11326,s11338,s11341,s11355,s11375,s11384,s11386,s11393,s11399,s11743,s11817,s11818,s13298r1,s13298r2,s13299r1,s13299r2,s13304,s13306,s13311,s13358,s13416,s13418,s13419,s13421,s13426,s13427,s13428,s13622,s13626,s13629,s13631,s13633,s13749,s13768,s13769,s13770,s14436,s14441,s14442,s14455,s14460,s14461,s15679,s15680,s15681,s18017,s18020,s18022,s18031,s18151,s18255,s18259,s18730,s18749,s18754,s18758,s20344,s4836,s4841,s4951,s4954,s4955,s4957,s4958,s5930,s5934,s5938,s5942,s5947,s5948,s5950,s5954,s5956,s5961,s6016,s6018,s6408,s6409,s6413,s6684,s6727r1,s7238,s7240,s7310,s7314,s7321,s7409r2,s7426,s7431,s7433r2,s8611,s8616,s8618,s8620,s8828,s8971,s8980,s8982,s8984,s9001,s9063,s9064,s9066,s9464,s9473,s9541,s9544,s9568,s9575,s9578,s9579,s9582,s9585,s9589,s9597,s9599,s9608,s9755,s9757,s9758,s9761,s9770,s9772,s9777 +chr22 22099211 22099212 - chr22 22904989 22904990 + s11750,s13296,s18017,s18022,s18759,s4955,s4958,s4970,s6016,s8611,s8618,s8623,s9063,s9066,s9578,s9772,s5950 +chr22 22322793 22322973 - chr22 22893779 22922592 + s11336,s6408,s6046,s6411,s11386,s5930,s5934,s7240,s8971,s8828,s9758,s7433,s6729,s9063,s9845,s10011,s11324,s13424,s15680,s4836,s4955,s5964,s6684,s7431,s8618,s8622,s8652,s8660,s8830,s8982,s9473,s9575,s9777,s13298r1,s13769,s8980,s9064,s13358,s5950,s11750,s18754,s14434,s13426,s9578,s14437,s9608,s9606,s13755,s9066,s5961,s8623,s11341,s13622,s13768,s8965,s7250,s11338,s11374,s13629,s13749,s15681,s18758,s5948,s5954,s9584,s13428,s11355,s11397,s11745,s13311,s13419,s18022,s18748,s20342,s4951,s9001,s9585,s9589,s6018,s9772,s13420,s9067,s6408,s9568,s6413 +chr22 22343490 22395491 - chr22 22893781 22906373 + s13622,s7433a2,s7427,s7427r2,s9579,s9464,s9777,s13298r1,s13298r2,s13769,s4954,s7240,s5930,s9473,s6727r1,s11384,s13420,s9608,s13426,s20401,s8982,s13302,s8614,s9597,s4958,s13428,s9772,s9473,s4955,s11324,s5961,s9775,s11745,s6408 +chr22 22410125 22410287 - chr22 22893780 22921398 + s4836,s14434,s13416,s13419,s13749,s18748,s4970,s9578,s9597,s9608,s9757,s13768,s14442,s18031,s10011,s13298r1,s8984,s6729,s5950,s15679,s8832 +chr22 22410281 22410282 - chr22 22893782 22893783 + s11324,s11338,s11393,s11399,s13304,s13311,s13426,s13754,s18017,s20345,s4083,s48452,s4955,s4958,s5954,s5961,s6016,s6729,s7431,s74332,s8614,s8618,s8623,s9067,s9758,s9845 +chr22 32814337 32814338 + chrX 17050119 17050120 + s11378,s11385,s11744,s11751,s11760,s13310,s14434,s14461,s18017,s18022,s18024,s5938,s8620,s8978 +chr2 61905739 61905859 - chr2 62135830 62135955 + COMMD1-COMMD1 (1) s11338,s11359,s13422,s13623,s13761,s20405,s4833,s5947,s6729,s7239,s7250,s8660,s9004,s9063,s9473,s9541,s9578,s9589,s9772,s9844 +chr2 88857072 88861996 - chr2 88886151 90248408 - IG Kappa Light Chain +chr2 88857072 88861996 - chr2 88886151 90248408 + IG Kappa Light Chain +chr2 88857241 88860606 - chr2 89085174 89330117 + s13420,s6411a,s6727r1,s8622,s11393,s15681,s20401,s5942,s4975,s9067,s13754,s13632,s11399,s13416,s7427,s7427r2,s9584,s13426,s11341,s9770,s9599,s6411,s6018,s11818,s8980,s18259,s13632,s9066,s6728,s11399,s7239,s4954,s5945,s18020,s18748,s5954,s5950,s13426,s8623,s15680,s7248a,s5961,s13427,s4975,s7314,s9064,s7250a,s13298r2,s14435,s10010,s9754,s9464,s6728,s13421,s7314,s4975,s9584,s9754,s8616,s8979 +chr2 88857317 88861924 - chr2 88885620 90221313 - s11760,s13427,s11360,s9847,s6418,s6719,s13307,s4970,s11370,s20342,s9759,s13622,s4970,s9775,s5948,s6018,s6411,s8660,s4975,s6731,s7426,s20344,s9541,s13419,s13632,s13416,s9596,s11399,s8612,s8623,s7426,s7316,s7321,s4955,s8611,s11374,s18020,s74332,s7211,s8612,s5964,s8980,s14442,s6018,s20345,s6406,s7426,s5930,s5942,s74092,s11374,s8618,s7211,s6409,s9777,s13418,s9772,s5930,s13768,s6731,s13419,s13419 +chr2 97194725 97194726 + chr2 97547535 97547536 + s6411,s6729,s10011,s11326,s11336,s11340,s11367,s11383,s11386,s11751,s13299r1,s13416,s14447,s18020,s18022,s18031,s18170,s18759,s20404,s6016,s8652,s8965,s8980,s9575,s9589,s9759,s9772 +chr2 99752301 99752302 - chr2 100006631 100006632 + s11337a,s11393a,s11399a,s13358a,s13755a,s14447a,s4957a,s5950a,s7318a,s8828a,s8971a +chr2 99837476 99837477 + chr2 100011571 100011572 - s11354a,s11399a,s11745a,s13766a,s14435a,s14439a,s14461a,s15681a,s18748a,s4953a,s9063a,s9464a,s9589a,s9754a,s9755a,s9845a +chr3 114380216 114380217 + chr3 114900342 114900343 - prtcl/007,013,019,021,025,037,038,125 +chr3 114693527 114693528 + chr3 114900342 114900343 - ZBTB20 large circular(1) prtcl/005,007,126 +chr3 116086434 116086557 - chr3 116442541 116442542 + prtcl/025,031 +chr3 116086434 116086557 - chr3 116444876 116444892 + prtcl/004,005,007,008,011,013,019,032,125,141,143,145,149 +chr3 116444955 116444956 - chr3 117997181 117997182 + prtcl/003,005,006,007,008,011,013,015,016,020,021,022,024,025,031,032,033,035,036,037,038,039,040,125,143,145,147 +chr3 117729179 117729180 - chr3 117997181 117997182 + prtcl/007,016,025,032,125,143 +chr3 131723625 131723626 - chr3 132034566 132034567 + prtcl/001,003,004,005,007,011,015,016,019,022,024,026,033,036,037,038,039,040,141,143,145,147,149 +chr3 131723625 131723626 - chr3 132037556 132037557 + CPNE4-CPNE4 prtcl +chr3 132040321 132040322 - chr3 132259660 132259661 + prtcl/039,011,014,015,024,026,032,036,037,040,141,147 +chr3 132040321 132040322 - chr3 132259783 132259784 + prtcl/011,014,015,024,026,032,036,037,040,141,147,151 +chr3 132044500 132044501 - chr3 132259783 132259784 + prtcl/001,013,022,025,031,038,143,145,149 +chr3 174859353 174864091 - chr3 175096789 175096897 + s4957,s6729,s6731,s7249,s10011,s11337,s11338,s11341,s11359,s11367,s11370,s11378,s11383,s11385,s11397,s11399,s11745,s13306,s13312,s13420,s13426,s13629,s13769,s14437,s14439,s14447,s14460,s15680,s18037,s18255,s18748,s20404,s4836,s4847,s5930,s5932,s5934,s5938,s5964,s6418,s6722,s7217,s7220,s7238,s7316,s7431,s8623,s8828,s8971,s8978,s9064,s9066,s9541,s9579,s9584,s9596,s9597,s9761,s9842,s9844,s9845,s13771,s13755,s13752,s6411,s9754,s13749,s6733,s13299r1,s6409 +chr3 175096789 175096790 + chr3 175324325 175324326 - prtcl/001,026,147 +chr3 188153363 188154253 - chr3 188406111 188406231 + LPP-LPP (1) s10010,s10011,s10014,s11324,s11325,s11338,s11364,s11365,s11368,s11383,s11386,s11393,s11394,s11397,s11743,s11744,s11745,s11750,s11751,s11756,s11817,s13296,s13297,s13298r2,s13299r1,s13299r2,s13302,s13304,s13306,s13308,s13310,s13311,s13312,s13358,s13416,s13419,s13421,s13422,s13619,s13622,s13623,s13626,s13633,s13752,s13755,s13761,s13768,s13770,s14432,s14434,s14435,s14439,s14441,s14447,s14460,s15680,s15681,s18017,s18020,s18022,s18024,s18031,s18151,s18259,s18730,s18748,s18754,s18758,s18759,s20404,s4083,s4833,s4836,s4841,s4847,s4955,s4970,s5930,s5932,s5934,s5945,s5947,s5956,s6016,s6046,s6411,s6413,s6727r1,s6730,s6731,s7220,s7238,s7241,s7247,s7248,s7250,s7314,s7318,s7321,s7426,s7427,s7427r2,s8612,s8614,s8618,s8652,s8828,s8965,s8971,s8977,s8982,s9001,s9004,s9064,s9067,s9473,s9568,s9575,s9579,s9585,s9589,s9592,s9597,s9608,s9757,s9844 +chr3 78938927 78938928 - chr3 79589823 79589824 + prtcl/024,025,026,038 +chr3 84959668 84959669 - chr3 85802046 85802047 + prtcl/001,011,022,024,025,026,037,038,149 +chr3 99818042 99818044 - chr3 100146972 100146976 + CMSS1-CMSS1 (1) s4845,s11378,s13299r1,s4975,s5942,s5945,s9758,s6729,s6730,s11325,s13298r2,s13299r2,s13428,s13623,s13626,s13749,s14432,s14460,s18020,s18022,s18037,s18151,s18759,s20344,s5934,s7238,s7318,s8652,s8660,s8965,s8980,s9004,s9064,s9065,s9571,s9575,s9757,s9761 +chr4 14477458 14477459 - chr4 14700742 14700743 + novel gene s11337,s11338,s11360,s11369,s11370,s11377,s11383,s11384,s11393,s11743,s11818,s13306,s13307,s13308,s13312,s13358,s13416,s13626,s13629,s13755,s13768,s13769,s13770,s14432,s14435,s14436,s14439,s14441,s14455,s14461,s15679,s18007,s18024,s20345,s4954,s5946,s5956,s7238,s7318,s7433,s8608,s8622,s8828,s9464,s9541,s9589,s9596,s9597,s9757,s9759,s9761,s9844,s9845,s9847 +chr4 30920261 30920370 - chr4 31142472 31142473 + s9579,s11324,s74332,s9597,s4833,s6046,s11364,s11377,s11754,s11817,s11819,s13304,s13358,s13416,s13422,s13426,s13625,s13626,s13629,s13631,s13749,s13768,s13771,s14432,s14436,s14437,s18022,s18749,s18751,s18759,s4970,s7239,s7310,s74092,s7428,s7454,s8614,s8615,s8652,s9004,s9473,s9575,s9584,s9592 +chr4 61201765 61201766 - chr4 61497120 61497121 + prtcl/306,314,329 +chr4 61934839 61934840 + chr4 62044549 62044550 - prtcl/306,314,347 +chr4 94875900 94875901 - chr4 95104407 95104408 + prtcl/001,003,005,007,011,024,025,033,038,039,141,143,145,147,149 +chr5 137140595 137140700 - chr5 137498365 137498425 + prtcl/011,143,005,040,036,141 +chr5 137267050 137267060 - chr5 137498365 137498425 + prtcl/001,015,033,035,125,145,149 +chr5 155728990 155728991 - chr5 156123855 156123856 + prtcl/007,011,013,022,038 +chr5 155870424 155870425 - chr5 156123855 156123856 + prtcl/024,125,147,151 +chr5 59215968 59215969 - chr5 59893167 59893168 + PDE4D-PDE4D (1) s13312,s7248,s7250,s10014,s11341,s11357,s11366,s11391,s13296,s13298r1,s13299r1,s13299r2,s13312,s13416,s13418,s13420,s13633,s13768,s14455,s18017,s18749,s18758,s20345,s4975,s5934,s6409,s6727r1,s6727r2,s6728,s6732,s7217,s7426,s8611,s8616,s8652,s8965,s8982,s9001,s9064,s9568,s9575,s9579,s9585,s9592,s9758,s9842,s9844,s9847 +chr5 59215968 59215969 - chr5 59988487 59988488 + prtcl/001,003,004,005,011,014,015,016,019,021,022,024,032,036,037,039,125,141,143,145,147,149 +chr5 59382411 59382412 - chr5 59768246 59768247 + PDE4D-PDE4D (2) s11355,s5961 +chr5 59382411 59382412 - chr5 59988487 59988488 + PDE4D-PDE4D (3) s13299r1,s13299r2,s14455,s20345 +chr5 59685943 59685944 - chr5 59988487 59988488 + PDE4D-PDE4D (4) s11366,s11819,s14455,s6727r1,s6728,s8965,s9064 +chr5 60185687 60185688 - chr5 60487943 60487944 + PDE4D-PDE4D (5) s6729,s7248,s10014,s11357,s11366,s18749,s4975,s5942,s5948,s6727r1,s8965,s9064,s9842 +chr6 16522626 16522627 + chr6 16753347 16753348 - ATXN1 large circular (1) prtcl/008,125,004,032,038,039,151,152 +chr6 16585779 16585780 + chr6 16753347 16753348 - ATXN1 large circular (2) prtcl/008,125,004,032,038,039,151,152 +chr6 16585779 16585780 + chr6 16754091 16754092 - ATXN1 large circular (3) prtcl/008,125,004,032,038,039,151,152 +chr6 1726512 1726513 - chr6 1930102 1930103 + GMDS-GMDS (1) s11325,s13296,s13297,s13299r1,s13311,s13422,s13626,s13749,s14432,s18020,s18022,s18024,s18031,s18170,s5934,s6728,s6729,s6732,s7220,s7310,s7318,s7321,s7409r2,s7431,s7454,s8982,s8984,s9772 +chr6 1726512 1726513 - chr6 1959866 1959867 + GMDS-GMDS (2) s11325,s13296,s13297,s13299r1,s13311,s13422,s13626,s13749,s14432,s18020,s18022,s18024,s18031,s18170,s5934,s6728,s6729,s6732,s7220,s7310,s7318,s7321,s7409r2,s7431,s7454,s8982,s8984,s9772 +chr6 1742511 1742512 - chr6 1959890 1959891 + GMDS-GMDS (3) s11325,s13296,s13297,s13299r1,s13311,s13422,s13626,s13749,s14432,s18020,s18022,s18024,s18031,s18170,s5934,s6728,s6729,s6732,s7220,s7310,s7318,s7321,s7409r2,s7431,s7454,s8982,s8984,s9772 +chr6 1742586 1742587 - chr6 1952031 1952032 + GMDS-GMDS (4) s11325,s13296,s13297,s13299r1,s13311,s13422,s13626,s13749,s14432,s18020,s18022,s18024,s18031,s18170,s5934,s6728,s6729,s6732,s7220,s7310,s7318,s7321,s7409r2,s7431,s7454,s8982,s8984,s9772 +chr6 1742586 1742587 - chr6 1959866 1959867 + GMDS-GMDS (5) s11325,s13296,s13297,s13299r1,s13311,s13422,s13626,s13749,s14432,s18020,s18022,s18024,s18031,s18170,s5934,s6728,s6729,s6732,s7220,s7310,s7318,s7321,s7409r2,s7431,s7454,s8982,s8984,s9772 +chr6 1742586 1742587 - chr6 1959867 1959868 + GMDS-GMDS (6) s11325,s13296,s13297,s13299r1,s13311,s13422,s13626,s13749,s14432,s18020,s18022,s18024,s18031,s18170,s5934,s6728,s6729,s6732,s7220,s7310,s7318,s7321,s7409r2,s7431,s7454,s8982,s8984,s9772 +chr6 1742586 1742587 - chr6 1959891 1959892 + GMDS-GMDS (7) s11325,s13296,s13297,s13299r1,s13311,s13422,s13626,s13749,s14432,s18020,s18022,s18024,s18031,s18170,s5934,s6728,s6729,s6732,s7220,s7310,s7318,s7321,s7409r2,s7431,s7454,s8982,s8984,s9772 +chr6 1742586 1742587 - chr6 2115770 2115771 + GMDS-GMDS (8) s11325,s13296,s13297,s13299r1,s13311,s13422,s13626,s13749,s14432,s18020,s18022,s18024,s18031,s18170,s5934,s6728,s6729,s6732,s7220,s7310,s7318,s7321,s7409r2,s7431,s7454,s8982,s8984,s9772 +chr6 20781144 20781145 + chr6 20955585 20955586 - CDKAL1 large circular (1) s4833,s4845,s6730,s7248,s7250,s11394,s13304,s13428,s13749,s13770,s14437,s15680,s15681,s4841,s4975,s5942,s6408,s6727r1,s6727r2,s6728,s7427,s7427r2,s7428,s8618,s9001,s9592 +chr6 20781144 20781145 + chr6 21065228 21065229 - CDKAL1 large circular (2) s11819,s8612,s8982,s10014,s13297,s15679,s5948 +chr6 37820016 37820017 - chr6 38061592 38061593 + s10011,s10014,s11324,s11325,s11338,s11360,s11364,s11377,s11386,s11393,s11402,s11745,s11751,s11760,s13297,s13298r1,s13298r2,s13299r1,s13302,s13304,s13306,s13307,s13308,s13310,s13311,s13312,s13358,s13418,s13420,s13421,s13422,s13424,s13426,s13625,s13626,s13632,s13633,s13749,s13752,s13754,s13755,s13761,s13770,s13771,s14434,s14435,s14447,s14461,s15679,s15681,s18017,s18020,s18022,s20401,s20403,s20404,s4841,s5930,s5934,s5938,s5942,s5946,s5950,s5961,s6046,s6409,s6722,s6727r1,s6730,s6731,s7239,s7241,s7247,s7248,s7318,s7321,s7431,s7433,s8614,s8615,s8618,s8623,s8652,s8660,s8828,s8965,s8971,s8977,s8982,s9001,s9063,s9064,s9067,s9568,s9575,s9579,s9585,s9597,s9606,s9608,s9755,s9761,s9844 +chr6 87506448 87507940 - chr20 53404941 53405106 - SLC35A1-TSHZ2 s10010,s11338,s11364,s11375,s11378,s11384,s11743,s11750,s11751,s11760,s11764,s13296,s13302,s13308,s13311,s13416,s13421,s13623,s13626,s13629,s13631,s13768,s13770,s15680,s18020,s18031,s18037,s18170,s18759,s4833,s4954,s4970,s4975,s5938,s5946,s6016,s6411,s7318,s7433r2,s8965,s8979,s9761,s9772 +chr6 87506448 87507940 + chr20 53404941 53405106 + SLC35A1-TSHZ2 s10010,s11338,s11364,s11375,s11378,s11384,s11743,s11750,s11751,s11760,s11764,s13296,s13302,s13308,s13311,s13416,s13421,s13623,s13626,s13629,s13631,s13768,s13770,s15680,s18020,s18031,s18037,s18170,s18759,s4833,s4954,s4970,s4975,s5938,s5946,s6016,s6411,s7318,s7433r2,s8965,s8979,s9761,s9772 +chr7 11636961 11636962 - chr7 12094652 12094653 + prtcl/008,025,151 +chr7 146116973 146116974 - chr7 146774270 146774271 + prtcl/001,003,004,005,007,008,011,013,015,016,019,020,021,022,024,025,032,033,037,038,039,040,125,141,143,145,147,149 +chr7 157682756 157682938 - chr7 157898670 157898700 + prtcl/040,022,014,003,037,149,003,019,024,025,035,032,038,019,125,147 +chr7 157682756 157682938 - chr7 158081290 158081325 + prtcl/040,022,014,003,037,149,003,019,024,025,035,032,038,019,125,147 +chr7 158205210 158205280 - chr7 158587550 158587620 + prtcl/040,022,014,003,037,149,003,019,024,025,035,032,038,019,125,147 +chr7 158316800 158316940 - chr7 158587550 158587620 + prtcl/040,022,014,003,037,149,003,019,024,025,035,032,038,019,125,147 +chr7 18162349 18162350 - chr7 18496261 18496262 + HDAC9-HDAC9 (1) s11743,s13416,s13424,s13428,s13770,s13771,s14434,s14436,s4955,s5954,s6413,s8614,s8623,s8982,s9582,s9592 +chr7 26201744 26201769 + chr15 40561980 40562772 + s11324,s11338,s11354,s11365,s11384,s11385,s11386,s11744,s11750,s11751,s11756,s11764,s11819,s13296,s13297,s13311,s13312,s13418,s13422,s13424,s13428,s13622,s13768,s13770,s14432,s14435,s14436,s14439,s14441,s15679,s15680,s15681,s18017,s18020,s18022,s18024,s18259,s18730,s18749,s18751,s18759,s4845,s5933,s5961,s6046,s6413,s6722,s6730,s6731,s7240,s7310,s7318,s7321,s7409r2,s7427,s7427r2,s7431,s8614,s8618,s8620,s8623,s8660,s8828,s8830,s8965,s8982,s8984,s9064,s9066,s9473,s9589,s9592,s9596,s9597,s9606,s9757,s9758,s9761,s9772,s9775,s6730 +chr7 55773180 55773181 + chr7 56021118 56021119 + prtcl/007,026,140,143,145 +chr7 67304075 67304236 + chr7 102378887 102378888 + s8984,s13296,s13619,s13631,s14434,s18734,s18751,s8622,s8830,s13629,s13422,s13632,s18748,s7239,s7318,s8616,s9066,s18730,s14442,s18758 +chr7 67304407 67304444 - chr7 102378674 102378875 - s6411,s11394,s11754,s11756,s13297,s13626,s18748,s18751,s9063,s13304,s8616,s13311 +chr9 123757702 123757703 + chr9 123879021 123879022 - prtcl/003,007,011,038,040,125,140,141 +chr9 17933025 17933026 - chr9 18163861 18163862 + prtcl/329,345,349,383 +chr9 41230099 41235015 - chr9 63818084 63823161 - s132981,s15679,s11377,s11764,s13625,s11754,s6411,s11377,s13304,s18022,s11764,s13625,s15681,s11762,s18748,s13296,s18024,s4958,s8984,s9770,s15681,s9606,s6721,s8608,s13626,s4970 +chr9 41254111 41254122 + chr9 62818021 62818478 - s11751,s11377,s7428,s13297,s6411-,s18037,s11384,s13298r2,s10010,s18024,s11360,s13298r1,s13625,s8652,s14455,s18017,s11380,s4953,s18031,s9589 +chr9 9442088 9442294 + chr9 35657753 35657995 + +chr9 9442088 9442294 - chr9 35657753 35657995 - prtcl/347 +chrX 124963817 124963818 - chrX 125184707 125184708 + prtcl/004,005,006,007,008,011,014,015,019,022,024,025,032,033,036,037,038,039,040,125,140,143,145,149,151 +chr3 65622088 65622089 - chr3 65902596 65902597 + prtcl +chr3 65622088 65622089 - chr3 66037995 66037996 + prtcl +chr3 65745588 65745589 - chr3 66037995 66037996 + prtcl +chr3 76311417 76311418 - chr3 77098013 77098014 + prtcl +chr3 107129992 107129993 - chr3 107482199 107482200 + prtcl +chr3 114500351 114500352 + chr3 114900342 114900343 - ZBTB20-ZBTB20 prtcl +chr3 116801300 116801301 - chr3 117997181 117997182 + prtcl +chr3 117009374 117009375 - chr3 117997181 117997182 + prtcl +chr3 117339787 117339788 - chr3 117997181 117997182 + prtcl +chr3 131989516 131989517 + chr3 131994540 131994541 + suspected mistake in ref genome prtcl +chr3 132040321 132040322 - chr3 132267464 132267465 + new gene prtcl +chr3 132040321 132040322 - chr3 132320573 132320574 + new gene prtcl +chr3 132044500 132044501 - chr3 132267464 132267465 + new gene prtcl +chr3 132044500 132044501 - chr3 132320573 132320574 + new gene prtcl +chr3 136398748 136398749 + chr3 136502779 136502780 - STAG1 large circular prtcl +chr3 140176073 140176074 - chr3 140385560 140385561 + CLSTN2 splice variant prtcl +chr3 140176073 140176074 - chr3 140403628 140403629 + CLSTN2 splice variant prtcl +chr3 160756707 160756708 - chr3 160961735 160961736 + PPM1L splice variant prtcl +chr3 172112451 172112452 + chr3 172251541 172251542 - FNDC3B large circular prtcl +chr3 175096789 175096790 + chr3 175256530 175256531 - NAALADL2 large circular prtcl +chr3 188225527 188225528 - chr3 188484591 188484592 + LPP splice variant prtcl +chr3 188406111 188406112 + chr3 188524787 188524788 - LPP large circular prtcl +chr3 2098978 2098979 - chr3 2571415 2571416 + CNTN4 splice variant +chr3 2099630 2099631 - chr3 2339177 2339178 + CNTN4 new exon splice variant +chr3 71299819 71299820 + chr3 71493555 71493556 - FOXP1 large circular +chr3 71359244 71359245 - chr3 71581548 71581549 + FOXP1 splice variant +chr3 85511898 85511899 - chr3 85802046 85802047 + CADM2 splice variant +chr4 147847150 147847151 + chr4 147955374 147955375 - ARHGAP10 large circular (1) +chr4 147857552 147857553 + chr4 147966839 147966840 - ARHGAP10 large circular (2) +chr4 28215148 28215149 - chr4 28476449 28476450 + new gene +chr4 94875830 94875831 + chr4 94996134 94996135 - BMPR1B large circular (1) +chr4 95335552 95335632 - chr4 95548733 95548751 + UNC5C-UNC5C prtcl/015,040,016 +chr5 107427509 107427510 - chr5 107669641 107669642 + EFNA5-EFNA5 +chr5 108021001 108021002 - chr5 108224120 108224121 + FBXL17-FBXL17 +chr5 108186116 108186117 + chr5 108348530 108348531 - FBXL17-FBXL17 large circular (1) +chr5 156124019 156124020 - chr5 156344488 156344489 + prtcl/015,039,147,151 +chr5 165007412 165007413 - chr5 165348897 165348898 + prtcl/007,013,015,024,032,126,141,143,147,148,151 +chr5 165778074 165778075 - chr5 166083747 166083748 + new gene prtcl/141 +chr5 165778074 165778075 - chr5 166104099 166104100 + new gene prtcl/015 +chr5 165778074 165778075 - chr5 166218189 166218190 + new gene prtcl/126 +chr5 167073356 167073357 - chr5 167284763 167284764 + new gene prtcl/001,032,141,151 +chr5 168883336 168883337 - chr5 169193478 169193479 + SLIT3-SLIT3 (1) +chr5 59215830 59215975 - chr5 59768246 59768265 + PDE4D-PDE4D prtcl/147,008,151,026,152 +chr5 59468435 59468436 - chr5 59988487 59988488 + PDE4D-PDE4D prtcl/021,022,147,151 +chr5 60278164 60278165 - chr5 60487941 60487942 + PDE4D-PDE4D/PART1 prtcl/005,141,147,149 +chr5 88905208 88905209 + chr5 89095029 89095030 - MAF2C-AS1 circular +chr6 110667433 110667434 + chr6 110773937 110773938 - CDK19 circular +chr6 156829226 156829227 + chr6 156935576 156935577 - ARID1B circular +chr6 16485971 16485972 + chr6 16754746 16754747 - ATXN1 circular new exon +chr6 16522626 16522627 + chr6 16657901 16657902 - ATXN1 circular +chr6 20781144 20781145 + chr6 21000372 21000373 - CDKAL1 circular +chr7 110663721 110663722 - chr7 110886592 110886593 + IMMP2L-IMMP2L +chr7 110663721 110663722 - chr7 110963499 110963500 + IMMP2L-IMMP2L +chr7 110663450 110963566 - chr7 111417258 111417259 + IMMP2L-IMMP2L +chr7 122663569 122663570 - chr7 122885998 122885999 + CADPS2-CADPS2 +chr7 146839820 146839855 - chr7 147043910 147043940 + prtcl/151,039,025 +chr7 71132830 71133045 - chr7 71335540 71335580 + prtcl/008,144,039,126,149" +chr8 127006618 127006619 - chr8 127339280 127339281 + prtcl/004,143 +chr8 140024079 140024080 - chr8 140252776 140252777 + TRAPPC9-TRAPPC9 +chr8 140761164 140761165 + chr8 140890769 140890770 - PTK2 circular (1) +chr8 140789473 140789474 + chr8 140890769 140890770 - PTK2 circular (2) +chr8 19506130 19506131 - chr8 19757185 19757186 + CSGALNACT1 new exon +chr8 42906172 42906173 + chr8 43018494 43018495 - HOOK3 large circular +chr9 10033790 10033791 - chr9 10340962 10340963 + PTPRD-PTPRD +chr9 10033790 10033791 - chr9 10612397 10612398 + PTPRD-PTPRD +chr9 10102328 10102329 - chr9 10340962 10340963 + PTPRD-PTPRD new exon +chr9 10341017 10341018 - chr9 10612397 10612398 + PTPRD-PTPRD +chr9 17309057 17309058 + chr9 17416189 17416190 - CNTLN large circular +chr9 20715321 20715322 + chr9 20823115 20823116 - FOCAD large circular +chr9 37126311 37126312 + chr9 37327834 37327835 - ZCCHC7 large circular +chr9 77794462 77794463 + chr9 77922345 77922346 - GNAQ large cicular +chr10 112668998 112669010 - chr10 112888734 112888735 + VTI1A new exon +chr10 115120184 115120185 + chr10 115241725 115241726 - ATRNL1 large circular +chr10 115120184 115120185 + chr10 115426302 115426303 - ATRNL1 large circular +chr10 115120184 115120185 + chr10 115549536 115549537 - ATRNL1 large circular +chr10 115120184 115120185 + chr10 115847991 115847992 - ATRNL1 large circular +chr10 115215696 115215697 + chr10 115315736 115315737 - ATRNL1 large circular +chr10 115215696 115215697 + chr10 115334419 115334420 - ATRNL1 large circular +chr10 115549536 115549537 - chr10 115847876 115847877 + ATRNL1-ATRNL1 +chr10 121790168 121790169 + chr10 121924329 121924330 - ATE1 large circular +chr10 18150975 18150976 - chr10 18401923 18401924 + CACNB2-CACNB2 +chr10 34470263 34470264 - chr10 34696317 34696318 + PARD3-PARD3 +chr10 45862985 45862986 + chr10 45964871 45964872 - LOC728407 large circular +chr10 472549 472550 - chr10 689493 689494 + DIP2C-DIP2C +chr10 486530 486531 - chr10 689493 689494 + DIP2C-DIP2C +chr10 60279550 60279650 - chr10 60508470 60733335 + prtcl/013,005,003,004,038,149 +chr10 7243557 7243558 + chr10 7381949 7381950 - normal SFMBT2 large circular +chr10 7276891 7276892 + chr10 7381949 7381950 - normal SFMBT2 large circular +chr10 75512777 75512778 - chr10 76036007 76036008 + prtcl/003,007,022,025,036,037,039,125,126,140,143,144,145,147,151 +chr10 77403900 77404025 - chr10 77637260 77637345 + prtcl/007,013,015,024,040,144,151 +chr11 102832906 102832907 - chr11 103048413 103048414 + prtcl/006,021,038,040,140 +chr11 112961664 112961665 - chr11 113204285 113204286 + NCAM1-NCAM1 +chr11 1480885 1480886 - chr11_KI270830v1_alt 16635 16636 + prtcl/001,013,021,022,032,036,037,141,143,144,147,148 +chr11 17878207 17878208 + chr11 18008076 18008077 - SERGEF large circular +chr11 17878207 17878208 + chr11 18010139 18010140 - SERGEF large circular +chr11 23652394 23652395 - chr11 24043634 24043635 + prtcl/001,015,038 +chr11 62841770 62841790 - chr11 65500025 65505145 - prtcl/125,040,140,035,007,008,152,024 +chr11 84534731 84534732 - chr11 85111660 85111661 + DLG2-DLG2 +chr11 84534731 84534732 - chr11 85154555 85154556 + DLG2-DLG2 +chr12 116096668 116096669 + chr12 116237705 116237706 - MED13L large circular +chr12 1289851 1289852 + chr12 1408247 1408248 - ERC large circular +chr12 19132392 19132393 + chr12 19257537 19257538 - PLEKHA5 large circular +chr12 20370244 20370245 - chr12 20613442 20613443 + PDE4A-PDE4A +chr12 41194188 41194189 - chr12 41506455 41506456 + PDZRN4-PDZRN4 +chr12 85424204 85424205 - chr12 85702880 85702881 + prtcl/003,015,038 +chr13 100262728 100262729 + chr13 100368574 100368575 - PCCA large circular +chr13 100301459 100301460 + chr13 100449305 100449306 - PCCA large circular +chr13 66631411 66631412 - chr13 67225404 67225405 + PCDH9-PCDH9 +chr13 69838975 69838976 + chr13 69975802 69975803 - KLHL1 large circular +chr13 71557023 71557024 + chr13 71681910 71681911 - DACH1 large circular +chr13 75621762 75621763 + chr13 75727098 75727099 - LMO7 large circular +chr13 93227545 93227625 - chr13 93545255 93545285 + prtcl/024,016,125,148 +chr13 93545421 93545422 - chr13 93830153 93830154 + GPC6-GPC6 +chr14 37817577 37817578 + chr14 37968588 37968589 - new large circular +chr14 37867360 37867361 + chr14 37968588 37968589 - new large circular +chr14 37868445 37868446 + chr14 37968588 37968589 - new large circular +chr15 20239401 20239402 + chr15 21047860 21047861 + new large circular +chr15 71256715 71256716 - chr15 71660529 71660530 + THSD4-THSD4 +chr15 77252366 77252367 + chr15 77365225 77365226 - PEAK1 large circular +chr16 47497398 47497399 + chr16 47610920 47610921 - PHKB large circular +chr16 7304485 7304486 - chr16 7518146 7518147 + prtcl/008,035,125 +chr16 85371278 85371279 - chr16 85633913 85633914 + new exon in GSE1 +chr16 85371278 85371279 - chr16 85648551 85648552 + new exon in GSE1 +chr17 61084564 61084565 - chr17 61368326 61368327 + BCAS3-BCAS3 +chr18 13278104 13278105 + chr18 13438384 13438385 - LDLRAD4 large ciruclar +chr18 13387762 13387763 - chr18 13621116 13621117 + LDLRAD4-LDLRAD4 +chr18 26501250 26501251 - chr18 26703391 26703392 + KCTD1-PCAT18 readthrough +chr18 44701174 44701175 + chr18 44869283 44869284 - SETBP1 large circular +chr18 74630966 74630967 + chr18 74781502 74781503 - ZNF407 large circular +chr19 617634 617635 + chr19 15902499 15902500 - prtcl/040,125,126 +chr20 14684959 14684960 - chr20 15229930 15229931 + MACROD2-MACROD2 alignment artefact +chr20 8371450 8371451 - chr20 8628294 8628295 + PLCB1-PLCB1 +chr21 14857708 14857709 - chr21 15064744 15064745 + NRIP1 missing exon +chr21 28228478 28228479 - chr21 28446289 28446290 + prtcl/140,145,152" +chr22 33650668 33650669 - chr22 33919994 33919995 + LARGE-LARGE +chrX 22743343 22743344 - chrX 23064037 23064038 + RP11-40F8.2-RP11-40F8.2 alignment artefact +chrX 31968514 31968515 - chrX 32216915 32216916 + DMD1-DMD +chrX 42318552 42318553 - chrX 42581218 42581219 + prtcl/020,015,038 +chrX 65075912 65075913 - chrX 65366637 65366638 + prtcl/003,019,024,025,026,038,039,126,145,147,149,151,126 +chr1 173240023 173240024 - chr1 173462323 173462324 + NR_037845-NR_037845 +chr1 21002712 21002713 + chr1 21111383 21111384 - EIF4G3 large circular +chr1 219193081 219193082 + chr1 219295151 219295152 - prtcl/125,015,038,019 +chr1 224974090 224974091 + chr1 225097239 225097240 - DNAH14 large circular +chr1 247640429 247640430 - chr1 247860616 247860617 + prtcl/038,022,019,149 +chr1 46815264 46815265 - chr1 47029989 47029990 + CYP4B1-CYP4X1 readthrought prtcl/015,125 +chr1 57970865 57970866 - chr1 58253806 58253807 + DAB1 readthrough prtcl/033,015,019,022,038 +chr1 58262580 58262581 - chr1 58506059 58506060 + prtcl/005,006,016,125,148,152,140 +chr1 61277519 61277520 + chr1 61406727 61406728 - NFIA large circular +chr1 63774508 63774509 - chr1 64049690 64049691 + ROR1-ROR1 +chr1 72466386 72466387 - chr1 72749165 72749166 + new gene prtcl/140,015,019,022,038 +chr1 72519188 72519189 - chr1 72749165 72749166 + new gene prtcl/140,015,019,022,038 +chr1 8495062 8495063 + chr1 8614686 8614687 - RERE large circular +chr1 85358847 85358848 - chr1 85577983 85577984 + DDAH1-DDAH1 +chr2 10685919 10685920 + chr2 10686880 10686910 + normal prtcl/149/015/038 +chr2 168012633 168012634 + chr2 168129758 168129759 - STK39 large circular +chr2 18644300 18644301 - chr2 18919212 18919213 + prtcl/007,148" +chr2 18688328 18688329 - chr2 18919212 18919213 + prtcl/145,147" +chr2 204686282 204686283 - chr2 204914450 204914451 + PARD3B-PARD3B new exon +chr2 24564294 24564295 + chr2 24683128 24683129 - NCOA1 large circular new exon +chr2 94211974 94211975 - chr2_KI270772v1_alt 44348 44349 - prtcl/008,031,125 +chr6 8558643 8558644 - chr6 8784151 8784152 + RP11-315C16.1-RP11-315C16.1 basis +chr6 51407584 51407585 + chr6 159750864 159750865 + basis +chr6 16485971 16485972 + chr6 16753347 16753348 - ATXN1 large circular basis +chr6 51407584 51407585 + chr6 159750864 159750865 + s6731,s7248,s10014,s11324,s11359,s11364,s11365,s11368,s11393,s11394,s11820,s13297,s13298r1,s13299r1,s13299r2,s13304,s13418,s13625,s18020,s18754,s4970,s4975,s8660,s8978,s9575,s9579,s9592,s9755,s9757,s9844 +chrX 7929413 7929414 - chrX 8228334 8228335 + s6731,s11383,s11385,s11394,s11751,s11756,s13297,s13298r1,s13298r2,s13299r1,s13311,s13422,s13426,s13622,s13623,s6409,s6732,s6733,s7239,s7241,s7409,s8652,s8828,s8965,s8971,s9592 +chrX 136668062 136668063 + chrX 136781148 136781149 - +chrX 104658995 104658996 - chrX 105195474 105195475 + +chr6 8558643 8558644 - chr6 8784190 8784191 + +chr6 71585215 71585216 - chr17 41524998 41524999 - +chr6 32641288 32643160 + chr6 32741525 32746417 - alignment artefact homologue HLA-DQA1/2 +chr6 31224527 31224528 - chr6 31530620 31530621 + maps to highly simlar region +chr6 29944136 29944139 - chr6 31355375 31355385 - HLA-A/B +chr6 24683762 24683763 + chr22 32533808 32533809 - +chr6 24683650 24683780 - chr22 32531900 32532015 + +chr6 21668899 21668900 - chr6 21909469 21909470 + CASC15-CASC15 +chr5 97431900 97431901 - chr5 97668550 97668551 + +chr5 96379652 96379653 - chr5 96675538 96675539 + +chr5 73960499 73960500 - chr21 26019655 26019656 - +chr5 67214577 67214578 - chr5 67619790 67619791 + new gene +chr5 67215104 67215105 - chr5 67619790 67619791 + new gene +chr5 67216597 67216598 - chr5 67619790 67619791 + new gene +chr5 67244662 67244663 - chr5 67619790 67619791 + new gene +chr5 53886713 53886714 - chr5 54111387 54111388 + ARL15-ARL15 +chr5 53886713 53886714 - chr5 54113201 54113202 + ARL15-ARL15 +chr5 143333796 143333797 + chr10 28523584 28523587 + +chr5 129107062 129107063 - chr5 129343668 129343669 + +chr4 9601620 9601621 - chr12 32100478 32100479 - +chr4 9601617 9601618 - chr6 88382558 88382559 - +chr4 77557485 77557486 + chr17 14033725 14033726 - +chr11 1599121 1599122 + chr11 71561140 71561141 + +chr11 5709255 5709256 - chr11 5937400 5937401 + +chr11 96092296 96092297 - chr11 96342907 96342908 + MAML2-MAML2 +chr11 96093511 96093512 - chr11 96341382 96341383 + MAML2-MAML2 +chr11 96093517 96093518 - chr11 96299457 96299458 + MAML2-MAML2 +chr11 96093517 96093518 - chr11 96339636 96339637 + MAML2-MAML2 +chr11 96093517 96093518 - chr11 96341382 96341383 + MAML2-MAML2 +chr11 96093517 96093518 - chr11 96341539 96341540 + MAML2-MAML2 +chr11 309080 330930 + chr11 320635 320660 + FITM2-FITM3 readthrough +chr11 308180 308300 - chr11 320690 320735 - FITM2-FITM3 readthrough +chr11 9083003 9083004 - chr11 83317876 83317877 - +chr16 15027035 15027036 + chr16 70013773 70013774 + PDXC1-PDXC2P +chr16 29226896 29226897 + chr16 88192912 88192913 + +chr16 29110508 29110509 - chr16 87978487 87978488 + +chr16 15027035 15027036 + chr16 70013773 70013774 + +chr16 78164289 78164290 - chr16 78424869 78424870 + WWOX-WWOX +chr16 78432752 78432753 - chr16 78996201 78996202 + WWOX-WWOX +chr15 63071207 63071208 + chr15 81323670 81323671 - +chr15 39071608 39071609 - chr15 39600844 39600845 + +chr11 18269714 18269715 + chr11 35488325 35488326 - +chr11 17788413 17788414 - chr11 17988596 17988597 + SERGEF-SERGEF +chr11 131370463 131370897 - chr11 132146273 132146523 + NTM-NTM +chr11 106177330 106177331 - chr11 106409142 106409143 + new gene +chr11 106177330 106177331 - chr11 106532684 106532685 + new gene +chr12 116022465 116022602 - chr12 116237468 116237609 + MED13L-MED13L +chr13 75621762 75621763 + chr13 75761038 75761039 - +chr13 50433550 50433551 - chr13 50712537 50712538 + DLEU1-DLEU7 +chr13 50433550 50433551 - chr13 50757762 50757763 + DLEU1-DLEU7 +chr13 33130289 33130290 - chr13 33350289 33350290 + STARD13-STARD13 +chr13 33142373 33142374 - chr13 33350289 33350290 + STARD13-STARD13 +chr13 33167622 33167623 - chr13 33439690 33439691 + STARD13-STARD13 +chr3 77098340 77098341 - chr3 77340431 77340432 + +chr3 61748982 61748983 - chr3 61989624 61989625 + PTPRG-PTPRG +chr3 61562372 61562373 - chr3 61989624 61989625 + PTPRG-PTPRG +chr3 23217312 23217313 - chr3 23449857 23449858 + UBE2E2-UBE2E2 +chr3 195687747 195689439 - chr3 195959108 195960499 - +chr3 195689773 195691177 - chr3 195956590 195958606 - +chr3 195655296 195691112 + chr3 195957571 197630765 + +chr7 9760063 9760064 - chr7 10085275 10085276 + new gene +chr7 9822041 9822042 - chr7 10085275 10085276 + new gene +chr7 9866917 9866918 - chr7 10085275 10085276 + new gene +chr7 93591771 93591772 - chr7 93807203 93807204 + new gene +chr7 89423248 89423249 - chr7 89694320 89694321 + +chr7 7673322 7673454 - chr7 7877280 7877400 + +chr7 42023467 42023468 + chr7 42223295 42223296 - GLI3 large cicular +chr7 42040037 42040038 + chr7 42223295 42223296 - GLI3 large cicular +chr7 42076751 42076752 + chr7 42223295 42223296 - GLI3 large cicular +chr7 40509545 40509546 - chr7 40749433 40749434 + +chr7 29146960 29146961 - chr7 29354624 29354625 + +chr7 156724111 156724112 + chr7 156826744 156826745 - +chr7 111989160 111989190 - chr7 112206101 112206102 + DOCK4-DOCK4 +chr7 112004131 112004132 - chr7 112205372 112205373 + DOCK4-DOCK4 +chr7 112004131 112004132 - chr7 112206101 112206102 + DOCK4-DOCK4 +chr7 109841570 109841571 - chr7 110120090 110120091 + new gene +chr7 109841570 109841571 - chr7 110180977 110180978 + new gene +chr7 109841570 109841571 - chr7 110290306 110290307 + new gene +chr7 109841570 109841571 - chr7 110394550 110394551 + new gene +chr7 109841570 109841571 - chr7 110432810 110432811 + new gene +chr8 95268890 95268891 - chr8 95610663 95610664 + readthrough +chr8 114648437 114648438 - chr8 114902464 114902465 + new gene +chr8 114648437 114648438 - chr8 114986615 114986616 + new gene +chr8 114648437 114648438 - chr8 114996319 114996320 + new gene +chr8 101543240 101543241 + chr8 101649499 101649500 - GRHL2 large circular +chr9 63823240 63823796 - chr9_KI270718v1_random 37432 37967 - +chr9 63823240 63823796 + chr9_KI270718v1_random 37432 37967 + +chr9 62798904 62798929 + chr9 63816726 63816848 + +chr9 137716625 137716626 + chr9 137818138 137818139 - +chr9 13553324 13553325 - chr9 13835797 13835798 + +chr10 8669801 8669802 - chr10 9065362 9065363 + +chr10 77404023 77404024 - chr10 77710505 77710506 + KCNMA1 new exon +chr10 77493929 77493930 - chr10 77710505 77710506 + kCNMA1 new exon +chr10 74151250 74151310 - chr10 74394145 74394175 + ADK-ADK (1) +chr10 74176850 74176890 - chr10 74394135 74394240 + ADK-ADK (2) +chr10 51153180 51153335 - chr10 51804580 51804680 + PRKG1-PRKG1 +chr10 24219734 24219910 - chr10 24432994 24433024 + KIAA1217-KIAA1217 +chr10 24219695 24219910 - chr10 24473226 24473227 + +chr10 129467285 129467297 - chr10 129707894 129707895 + MGMT-MGMT +chr10 129536255 129536378 - chr10 129759201 129759258 + MGMT-MGMT +chr10 129536255 129536378 - chr10 129766785 129766788 + MGMT-MGMT +chr10 8669801 8669802 - chr10 9065362 9065363 + +chr10 77404023 77404024 - chr10 77710505 77710506 + +chr10 74151265 74151306 - chr10 74394141 74394232 + ADK-ADK +chr10 74176855 74176887 - chr10 74394141 74394232 + ADK-ADK +chr10 51153191 51153331 - chr10 51804584 51804671 + PRKG1-PRKG1 +chr1 71934907 71935336 - chr1 72282317 72282431 + NERG1-NERG1 +chr1 75396621 75396622 - chr1 75615852 75615853 + +chr1 75339630 75339631 - chr1 75615852 75615853 + +chr1 197595207 197595208 + chr1 197715074 197715075 - +chr1 197583151 197583152 + chr1 197772932 197772933 - +chr1 197583151 197583152 + chr1 197715074 197715075 - +chr1 164563311 164563312 - chr1 164792493 164792494 + +chr1 162070282 162070283 - chr1 162287343 162287344 + +chr2 78025424 78025425 - chr2 78485793 78485794 + +chr2 61473618 61473619 - chr2 61476320 61476321 - +chr2 41166555 41166556 - chr2 41418927 41418928 + +chr2 26057640 26057641 - chr2 151431799 151431800 - +chr2 19644860 19644861 - chr2 19901705 19901706 + +chr2 19661586 19661587 - chr2 19901705 19901706 + +chr2 155809927 155809928 + chr2 155914227 155914228 - +chr2 133213779 133213780 - chr2 133517457 133517458 + +chr2 10684612 10684613 - chr2 10686964 10686965 - NOL10-NOL10 +chr3 192360538 192360539 - chr3 192644265 192644266 + FGF12-FGF12 +chr3 17508601 17508606 - chr3 17742480 17742481 + TBC1D5-TBC1D5 +chr3 17508255 17508436 - chr3 17742491 17742534 + TBC1D5-TBC1D5 +chr3 17508473 17508474 + chr3 17623913 17623914 - TBC1D5-TBC1D5 +chr3 17508486 17508541 - chr3 17742485 17742527 + TBC1D5-TBC1D5 +chr3 172112451 172112509 + chr3 172226891 172226948 - +chr3 111232985 111239233 - chr3 111496887 111496962 + +chr4 91279163 91279164 - chr4 91598571 91598572 + +chr4 86194407 86194408 - chr4 86453029 86453030 + +chr4 52920490 52920871 - chr4 53145332 53145381 + +chr4 40233406 40233407 + chr4 40235440 40235441 + +chr4 157677333 157677334 - chr4 157929611 157929612 + +chr17 9250501 9250646 - chr17 9491828 9491846 + +chr17 9250501 9250646 - chr17 9505047 9505103 + +chr17 9250501 9250646 - chr17 9545169 9545263 + +chr17 72736719 72736720 - chr17 72947751 72947752 + +chr17 72736719 72736720 - chr17 72947730 72947731 + +chr17 57262192 57262193 - chr17 57529675 57529676 + MSI2-MSI2 +chr17 46231901 46231902 + chr17 46277010 46277011 + +chr17 46152903 46152904 + chr17 46247425 46247426 + +chr17 46152903 46152904 + chr17 46248084 46248085 + +chr17 45598501 45598502 - chr17 46152903 46152904 + +chr14 78243802 78243803 - chr14 78645119 78645120 + NRXN3-NRXN3 +chr14 66703613 66703614 - chr14 66705277 66705278 - +chr14 66703616 66703617 + chr14 66704988 66704989 + +chr14 44597013 44597014 - chr14 44797929 44797930 + +chr15 82388649 82388659 + chr15 84373749 84373763 - +chr15 71141448 71141449 + chr15 71256715 71256716 - +chr15 39071608 39071609 - chr15 39587320 39587321 + +chr15 9250548 9250646 - chr15 9491828 9491846 + +chr15 9250550 9250603 - chr15 9505047 9505103 + +chr15 9250501 9250603 - chr15 9545169 9545263 + +chr17 72736719 72736720 - chr17 72947730 72947731 + +chr17 72736719 72736720 - chr17 72947751 72947752 + +chr17 68306943 68306944 + chr17 68420507 68420508 - ARSG large circular +chr17 46231901 46231902 + chr17 46277010 46277011 + +chr17 46152903 46152904 + chr17 46247425 46247426 + +chr17 46152903 46152904 + chr17 46248084 46248085 + +chr17 45598501 45598502 - chr17 46152903 46152904 + +chr17 45597838 45597839 - chr17 46152903 46152904 + +chr17 45578419 45578420 + chr17 46289344 46289345 - +chr18 7567891 7567892 - chr18 7888105 7888106 + +chr18 44701174 44701175 + chr18 44803099 44803100 - +chr18 39535615 39535616 - chr18 39800068 39800069 + +chr18 34493514 34493515 - chr18 34755975 34755976 + +chr19 684258 684259 - chr19 57305536 57305537 - +chr19 57851543 57851984 - chr19 57914908 57914919 - +chr19 57852149 57852405 - chr19 57914830 57914898 - +chr19 57852149 57852405 + chr19 57914830 57914898 + +chr19 23379815 23379848 - chr19 23799177 23799607 - +chr19 23379735 23379766 + chr19 23799721 23799887 + +chr20 42885593 42885933 - chr20 43189642 43189815 + PTPRT-PTPRT +chr20 42885593 42885933 - chr20 43123761 43123762 + PTPRT-PTPRT +chr20 42472297 42472570 - chr20 42677863 42677941 + PTPRT-PTPRT +chr20 14695864 14695865 - chr20 15229939 15229940 + +chr21 8213880 8213886 + chr21 8441312 8441314 - +chr21 35580929 35580930 - chr21 35814950 35814951 + +chr21 35580929 35580930 - chr21 35864284 35864285 + +chr21 28577380 28577381 - chr21 28821904 28821905 + +chr21 17917400 17917401 - chr21 18199877 18199878 + CHODL-CHODL +chr21 17917400 17917401 - chr21 18224515 18224516 + CHODL-CHODL +chr21 17917787 17917788 - chr21 18256508 18256509 + CHODL-CHODL +chr22 47687206 47687207 - chr22 48013740 48013741 + +chrX 94303122 94303123 - chrX 94529409 94529410 + new gene +chrX 94326894 94326895 - chrX 94529409 94529410 + new gene +chrX 94193575 94193576 - chrX 94529409 94529410 + new gene +chrX 68081700 68081701 + chrX 68194498 68194499 - OPHN1 large circular (1) +chrX 68081700 68081701 + chrX 68299096 68299097 - OPHN1 large circular (2) +chrX 68096869 68096870 + chrX 68201710 68201711 - OPHN1 large circular (3) +chrX 68096869 68096870 + chrX 68299096 68299097 - OPHN1 large circular (4) +chrX 132218837 132218838 - chrX 132429812 132429813 + +chrX 129200769 129200770 - chrX 129448332 129448333 + +chrX 129180053 129180054 - chrX 129448332 129448333 + +chr1 78643143 78643144 + chr1 78838564 78838565 - new circular +chr1 789460 789510 + chr1 224014210 224014520 - +chr1 78643143 78643144 + chr1 78838564 78838565 - +chr1 61088265 61088690 - chr1 61332524 61332946 + +chr1 61088265 61088690 - chr1 61352449 61352466 + +chr1 58277672 58277673 - chr1 58506059 58506060 + +chr1 58253806 58253807 + chr1 58539310 58539311 - +chr1 49245801 49245860 - chr1 49851407 49851478 + +chr1 239678288 239678289 - chr1 239907432 239907433 + CHRM3-CHRM3 +chr1 216677491 216677492 - chr1 216905564 216905565 + +chr1 216677491 216677492 - chr1 217078135 217078136 + +chr1 215086367 215086368 + chr1 215195092 215195093 - +chr1 197595207 197595208 + chr1 197715074 197715075 - +chr1 170807604 170807605 - chr1 171168103 171168104 + +chr1 164563311 164563312 - chr1 164792493 164792494 + +chr1 164560013 164560014 - chr1 164792493 164792494 + +chr1 162070282 162070283 - chr1 162287343 162287344 + +chr1 145574819 145574843 + chr1 146074394 146074412 - +chr1 13893756 13893757 - chr1 14180434 14180435 + +chr5 34182832 34182870 - chr5 69916099 69916219 - +chr5 23977922 23977923 - chr5 24200195 24200196 + +chr5 15192449 15192450 - chr5 15425574 15425575 + +chr5 130462386 130462387 - chr5 130677594 130677595 + +chr5 107427238 107427510 - chr5 107670287 107670601 + +chr5 107084708 107084709 - chr5 107285893 107285894 + +chr6 81845909 81845910 - chr6 82057938 82057939 + +chr6 74636631 74636632 - chr6 74841949 74841950 + new gene +chr6 74636631 74636632 - chr6 74944955 74944956 + new gene +chr6 74636631 74636632 - chr6 75075943 75075944 + new gene +chr6 74842040 74842041 - chr6 75075943 75075944 + new gene +chr6 30261479 30261637 - chr6 31269043 31270086 - HLA-C +chr6 29945450 29945451 + chr6 31382240 31382241 + +chr6 29944138 29944139 - chr6 31355575 31355576 - +chr6 15246180 15246585 - chr6 15452005 15452044 + +chr7 118860012 118860013 - chr7 119165377 119165378 + +chr8 47279269 47279270 + chr8 47440542 47440543 - SPIDR large circular +chr8 47279269 47279270 + chr8 47599196 47599197 - SPIDR large circular +chr8 47279861 47279862 + chr8 47396626 47396627 - SPIDR large circular +chr8 47279861 47279862 + chr8 47440542 47440543 - SPIDR large circular +chr8 47279861 47279862 + chr8 47491994 47491995 - SPIDR large circular +chr8 18121057 18121058 - chr8 18343776 18343777 + NAT1 new splice variant +chr8 18121057 18121058 - chr8 18380317 18380318 + NAT1 new splice variant +chr8 18174093 18174094 - chr8 18380317 18380318 + NAT1 new splice variant +chr8 117830349 117830350 - chr8 118110084 118110085 + EXT1-EXT1 +chr8 117835461 117835555 - chr8 118110084 118110153 + EXT1-EXT1 +chr8 117835461 117835555 - chr8 118110128 118110135 + EXT1-EXT1 +chr8 117837119 117837202 - chr8 118060730 118060731 + EXT1-EXT1 +chr8 117837119 117837202 - chr8 118110084 118110085 + EXT1-EXT1 +chr8 117837119 117837202 - chr8 118110103 118110104 + EXT1-EXT1 +chr8 115418452 115418453 - chr8 115619131 115619132 + TRPS1-TRPS1 +chr8 115418452 115418453 - chr8 115668544 115668545 + TRPS1-TRPS1 +chr9 37126311 37126312 + chr9 37304313 37304315 - ZCCHC7 large circular +chr9 14146688 14146689 + chr9 14307520 14307521 - NFIB large circular +chr9 14179726 14179727 + chr9 14307520 14307521 - NFIB large circular +chr9 13553324 13553325 - chr9 13836312 13836313 + +chr4 9601619 9601620 + chr14 55024545 55024546 + adenoma +chr4 9601620 9601621 - chr6 88382555 88382556 - adenoma +chr4 10871074 10871075 - chr4 11120762 11120764 + adenoma specfic readthrough? +chr4 10871074 10871075 - chr4 11161762 11161763 + adenoma specfic readthrough? +chr8 100920440 100920441 + chrX 64612387 64612388 - +chr6 147509387 147509388 - chr6 148390133 148390134 + SASH1-SASH1 +chr6 106971247 106971248 - chr15 56072681 56072682 + +chr1 206929270 206929271 - chr19 41730132 41730133 - +chr1 206696115 206696116 + chr5 150446958 150446959 - +chr11 43855896 43855897 + chr11 84506381 84506382 - +chr16 89563066 89563067 - chr19 56217175 56217176 - +chr2 231713104 231713110 - chr17 76651452 76651455 - +chr2 231713109 231713110 - chr14 92027083 92027084 + +chr16 89561280 89561281 + chr17 17383854 17383855 + +chr16 35174381 35174382 - chr22 19175890 19175891 - +chr12 110294836 110294838 - chr16 89563066 89563067 - +chr12 16400460 16400461 + chr14 21360933 21360934 - +chr10 78037262 78037263 - chr11 33237307 33237308 + +chr9 131414409 131414410 + chr12 113871823 113871824 + +chr7 126904570 126904684 - chr7 127106494 127106508 + GRM8-GRM8 +chr6 31356202 31356861 - chr6_GL000254v2_alt 2611923 2698866 + HLA-B-HLA-B +chr5 61390792 61390793 - chr22 39313201 39313202 + +chr5 59382411 59382412 - chr5 59586328 59586329 + PDE4D new exon +chr5 176560933 176560934 - chr11_KI270927v1_alt 150312 150313 - +chr5 147922876 147922877 + chr11 62566880 62566914 + +chr4 9601620 9601621 - chr7 125221169 125221170 + +chr4 154812716 154812717 - chr12 106348974 106348975 - +chr4 117574873 117574874 - chr7 33014505 33014506 + +chr4 108622605 108622606 - chr13 24988762 24988763 - +chr3 40462025 40462047 + chr12 62965801 62965802 - +chr3 142827454 142827455 - chr8 144791298 144791299 + +chr1 13843040 13843108 - chr1 14180433 14180435 + +chr1 14180592 14180593 - chr1 14496667 14496668 + KAZN splice variant +chr1 14180592 14180593 - chr1 14598982 14598983 + KAZN splice variant +chr2 212124903 212124904 - chr2 212538448 212538449 + ERBB4-ERBB4 +chr2 212124903 212124904 - chr2 212537520 212537521 + ERBB4-ERBB4 +chr2 212124903 212124904 - chr2 212445329 212445330 + ERBB4-ERBB4 +chr2 211947429 211947430 + chr2 212124903 212124904 - ERBB4 large circular +chr2 212395910 212396030 + chr3 63905474 63905475 - +chr14 105587550 106538250 - chr14 105707555 106874785 + IGH chains +chr14 105587550 106538250 + chr14 105707555 106874785 - IGH chains +chr14 105600000 106800000 - chr14_KI270726v1_random 0 50000 - +chr14 105600000 106800000 + chr14_KI270726v1_random 0 50000 + +chr15 21142484 21143415 - chr22 22285529 22286389 + IGL duplicate +chr15 21142475 21143430 + chr22 22285515 22286400 - IGL duplicate +chr22 22100000 23000000 + chr22_KI270875v1_alt 0 300000 - +chr22 22100000 23000000 - chr22_KI270875v1_alt 0 300000 + +chr2 131571350 131571725 - chr14 18948624 18948750 + multi-map artefact +chr2 131571350 131571725 + chr14 18948624 18948750 - multi-map artefact +chr2 131571325 131571500 - chr18 54225925 54225975 + multi-map artefact +chr2 130026100 130931000 - chr2 131284800 131634000 - POTEI modifications? +chr2 130026100 130931000 - chr2 131284800 131634000 + POTEI modifications? +chr2 130026100 130931000 + chr2 131284800 131634000 - POTEI modifications? +chr2 130026100 130931000 + chr2 131284800 131634000 + POTEI modifications? +chr10 76029004 76029030 - chr14 74199770 74200250 - +chr10 76058783 76058784 - chr10 76324400 76324401 + LRMDA-LRMDA +chr3 174737652 174737747 - chr3 175096789 175097064 + NAALADL2-NAALADL2 alternative transcript +chr3 175096789 175096790 + chr3 175234204 175234205 - NAALADL2 larce circular +chr3 175262599 175262600 + chr9 70394298 70394299 + +chr3 174737656 174737685 - chr3 175096893 175097064 + +chr3 175233958 175234207 - chr3 175447225 175447244 + +chr11 70896500 70896501 + chr11 71119032 71119033 - SHANK2-SHANK2 large circular +chr11 70502931 70502932 - chr11 71224696 71224697 + SHANK2-SHANK2 +chr2 202201031 202201342 + chr12 51242498 51242859 + +chr6 151880675 151880772 - chr6 152094384 152094413 + ESR1-ESR1 +chr6 151957070 151957071 + chrX 47383194 47383195 + +chr6 132771830 132771850 + chr6 151851800 151851920 + +chr6 151807842 151807843 + chr6 151944395 151944509 - ESR1 large circular +chr6 151807842 151807843 + chr6 152011794 152011795 - ESR1 large circular +chr1 174256603 174256604 + chr6 152035755 152036005 - +chr6 151842620 151842788 - chr6 152060990 152094385 + ESR1-ESR1 +chr6 151842596 151842597 + chr6 151944508 151944509 - ESR1 large circular +chr11 62665430 62665434 + chr19 893592 893596 - +chr7 126477644 126477645 - chr18 79969403 79969404 + +chr19 11132215 11132735 + chr1 83242618 83242731 - +chr19 11132215 11132735 - chr1 83242618 83242731 + +chr19 11132215 11132735 - chr12 128745500 128745515 + +chr19 11132215 11132735 - chr13 19813095 19813115 - +chr19 11132215 11132735 - chr15 100850380 100850395 - +chr19 11132215 11132735 - chr7 112857310 112857320 - +chr19 11132215 11132735 - chr9 89966710 89966720 + +chr1 181718603 181718604 + chr7 103099601 103099602 + +chr3 94505960 94506210 + chr7 103099150 103099500 + +chr3 49403987 49404094 - chr7 136107450 136107454 + +chr3 49404094 49404095 + chr12 85726526 85726527 + +chr14 21643470 22272570 - chr14 22462910 22551660 + TRA homologue +chr2 218467950 218468040 - chr6 52501100 52501990 + +chr2 218467950 218468040 + chr6 52501100 52501990 - +chr8 140023904 140024075 - chr8 140252776 140252905 + TRAPPC9-TRAPPC9 +chr8 139988674 139988836 - chr8 140221458 140221491 + TRAPPC9-TRAPPC9 +chr8 139988674 139988836 - chr8 140252776 140252905 + TRAPPC9-TRAPPC9 +chr5 21278006 21278007 - chr8 115516268 115516269 - +chr2 76445370 76445405 - chr11 65499365 65499700 - +chr1 28508570 28508765 + chr11 65500895 65505630 - +chr1 28508570 28508765 + chr11 65500895 65505630 + +chr10 37305780 37428290 - chr11 65499735 65501190 + +chr11 62841645 62841810 - chr11 65499929 65506024 - +chr11 62841645 62841810 + chr11 65499929 65506024 + +chr2 76445353 76445421 - chr11 65499360 65506029 - +chr7 94427791 94428328 + chr11 65503400 65503524 - +chr9 35657810 35658023 - chr11 65500126 65503315 - +chr9 35657810 35658023 + chr11 65500126 65503315 + +chr11 65499391 65505983 - chr12 112267093 112267187 + +chr11 65489914 65511918 - chr22_KI270733v1_random 112743 184987 + +chr6 24683749 24683921 + chr22 32532141 32533816 - +chr2 211701966 211701967 + chr2 211947616 211947617 - ERBB4 large circular +chr2 211788024 211788025 + chr2 211947616 211947617 - ERBB4 large circular +chr2 211629820 211630135 + chr9 72153014 72153071 + +chr10 35955324 35959930 + chr10 37395190 37401967 - +chr10 35955324 35959930 - chr10 37395190 37401967 + +chr10 37396696 37396860 - chr20 22296859 22296935 + +chr2 135498429 135498440 - chr10 37412669 37413205 - +chr2 235494685 235494859 - chr2 236049048 236049069 + AGAP1-AGAP1 +chr2 235494685 235494859 - chr2 235709168 235709232 + AGAP1-AGAP1 +chr2 235499588 235499609 - chr2 235709168 235709232 + AGAP1-AGAP1 +chr2 235505624 235505645 - chr2 235709168 235709232 + AGAP1-AGAP1 +chr2 235494685 235494859 - chr2 235717545 235717618 + AGAP1-AGAP1 +chr2 235494685 235494859 - chr2 235740947 235740973 + AGAP1-AGAP1 +chr2 235494685 235494859 - chr2 235744685 235744734 + AGAP1-AGAP1 +chr4 122076228 122076316 - chr22 31205902 31206160 - +chr8 115498189 115500098 - chr11 58179047 58179099 - +chr8 115497954 115498298 - chr13 42026451 42026483 - +chr8 115524538 115524730 + chr22 42712708 42712752 + +chr8 115409249 1154092760 + chr15 60870437 60870458 - +chr14 103341880 103341901 + chr20 34200704 34200725 - +chr1 228256302 228256306 - chr22 22900970 22900980 + +chr1 228256302 228256306 - chr22 22906340 22906345 + +chr7 44328174 44328175 + chr22 22906340 22906345 + +chr7 44328174 44328175 + chr22 22900970 22900980 + +chr8 124144855 124144870 + chr22 22900970 22900980 + +chr3 195690630 195690640 + chr5 265415 265426 - +chr3 195692603 195693038 - chr5 267850 267901 + +chr3 195693137 195693462 + chr5 267915 267993 - +chr17 46291135 46291195 + chr17 64923595 64923615 + +chr17 46135404 46135415 + chr17 64922331 64922343 + +chr17 45613606 45613749 - chr17 46277000 46277049 + possibly new transcript +chr19 17582186 17582324 + chr20 35505413 35505437 + +chr19 17581773 17582043 - chr20 35505488 35505512 - +chr3 167786343 167786364 - chr19 17581690 17582056 - +chr10 27486902 27486955 - chr12 11104506 11104548 - +chr12 11042794 11042837 - chr12 15212296 15212390 + +chr3 63018769 63018822 - chr12 11038761 11038877 + +chr8 122656818 122656841 - chr12 11099626 11099709 + +chr3 171562605 171562606 + chr15 64951304 64951305 - +chr3 171562624 171562625 - chr15 64951299 64951300 + +chr2 99672589 99672590 - chr2 100006630 100006768 + AFF3-AFF3 +chr2 99727076 99727112 - chr2 100006630 100006768 + AFF3-AFF3 +chr2 99744103 99744132 - chr2 100006631 100006688 + AFF3-AFF3 +chr2 99752241 99752302 - chr2 100006631 100006688 + AFF3-AFF3 +chr2 99727076 99727077 + chr2 100008932 100008933 - AFF3 large circular +chr2 99837476 99837477 + chr2 100008932 100008933 - AFF3 large cicular +chr2 99649625 99649626 + chr2 100008932 100008933 - AFF3 large cicular +chr2 99649625 99649626 + chr2 100011571 100011572 - AFF3 large cicular +chr19 54353981 54354292 + chr22 34958203 34958231 - +chr19 54353982 54354111 + chr19 58458965 58458977 - +chr7 141780031 141780042 + chr19 54354020 54354139 + PLXDC2-PLXDC2 +chr10 19817053 19817192 - chr10 20046868 20046879 + PLXDC2-PLXDC2 +chr10 19817053 19817192 - chr10 20068167 20068199 + PLXDC2-PLXDC2 +chr10 19817191 19817192 - chr10 20143294 20143295 + PLXDC2-PLXDC2 +chr10 20001774 20001775 + chr10 20245505 20245506 - PLXDC2 large circular +chr10 20143294 20143295 + chr10 20245505 20245506 - PLXDC2 large circular +chr7 110663321 110663723 - chr7 110886592 110886620 + IMMP2L-IMMP2L +chr7 110663450 110963566 - chr7 111329393 111329394 + IMMP2L new exon +chr7 110663450 110963566 - chr7 111392801 111392802 + IMMP2L new exon +chr7 110663450 110963566 - chr7 111413944 111413945 + IMMP2L new exon +chr7 110886695 110886696 - chr7 111487237 111487238 + IMMP2L-IMMP2L +chr7 110663702 110663721 - chr7 111487237 111487278 + IMMP2L-IMMP2L +chr7 110886603 110886695 - chr7 111487237 111487278 + IMMP2L-IMMP2L +chr7 110886603 110886695 - chr7 111487237 111487250 + IMMP2L-IMMP2L +chr7 110663450 110963566 - chr7 111487237 111487250 + IMMP2L-IMMP2L +chr7 110964851 110964852 - chr7 111487237 111487250 + IMMP2L-IMMP2L +chr7 111080215 111080216 - chr7 111487237 111487250 + IMMP2L-IMMP2L +chr7 111235468 111235469 - chr7 111487237 111487250 + IMMP2L-IMMP2L +chr7 111275153 111275154 - chr7 111487237 111487250 + IMMP2L-IMMP2L +chr7 110663450 110963566 - chr7 111521312 111521348 + IMMP2L-IMMP2L +chr7 110886603 110886695 - chr7 111521312 111521348 + IMMP2L-IMMP2L +chr7 110663450 110963566 - chr7 111561850 111561861 + IMMP2L-IMMP2L +chr7 111275153 111275154 - chr7 111561850 111561861 + IMMP2L-IMMP2L +chr7 111417258 111417259 + chr7 111561923 111561924 - IMMP2L large circular +chr3 59536997 59536998 - chr3 59809731 59809732 + FHIT-FHIT +chr3 59752302 59752322 - chr3 60011370 60011371 + FHIT-FHIT +chr3 59752302 59752322 - chr3 60014006 60014007 + FHIT-FHIT +chr3 60014031 60014265 - chr3 60277452 60277470 + FHIT-FHIT +chr3 59922373 59922403 - chr3 60277452 60277470 + FHIT-FHIT +chr3 60014031 60014265 - chr3 60536756 60536980 + FHIT-FHIT +chr3 60014031 60014265 - chr3 60821918 60821938 + FHIT-FHIT +chr3 60014031 60014265 - chr3 60277452 60277483 + FHIT-FHIT +chr3 60014031 60014265 - chr3 61042043 61042077 + FHIT-FHIT +chr3 60822011 60822012 - chr3 61042046 61042047 + FHIT-FHIT +chr3 60822011 60822012 - chr3 61200616 61200617 + FHIT-FHIT +chr3 60536792 60536980 - chr3 61042043 61042077 + FHIT-FHIT +chr3 60536792 60536980 - chr3 60821918 60821938 + FHIT-FHIT +chr3 60536792 60536980 - chr3 61200616 61200617 + FHIT-FHIT +chr3 60536792 60536980 - chr3 61251300 61251381 + FHIT-FHIT +chr3 61041770 61042115 - chr3 61251300 61251381 + FHIT-FHIT +chr1 245764149 245764150 - chr1 246327200 246327276 + SMYD3-SMYD3 +chr1 245863812 245863887 - chr1 246327200 246327276 + SMYD3-SMYD3 +chr1 245915640 245915641 - chr1 246327200 246327276 + SMYD3-SMYD3 +chr1 245928000 245928036 - chr1 246327200 246327276 + SMYD3-SMYD3 +chr1 245929887 245929938 - chr1 246327200 246327276 + SMYD3-SMYD3 +chr1 245929887 245929938 - chr1 246507051 246507125 + SMYD3-SMYD3 +chr1 245929887 245929938 - chr1 246146855 246146890 + SMYD3-SMYD3 +chr1 245928000 245928036 - chr1 246186740 246186790 + SMYD3-SMYD3 +chr1 245858495 245858496 + chr1 246186922 246186963 - SMYD3 large circular +chr10 12349750 12349911 - chr10 12553220 12553284 + CAMK1D-CAMK1D +chr10 12553240 12553357 - chr10 12760940 12760989 + CAMK1D-CAMK1D +chr1 211941555 211941702 + chr22 40132769 40132793 + +chr7 128478364 128502809 + chr17 62422980 62449629 - METTL2A-METTL2B +chr1 16620400 16628001 - chr1 16946500 16949601 - CROCCP2-CROCC +chr1 16620400 16628001 + chr1 16946500 16949601 + CROCCP2-CROCC +chr8 139988765 139988837 - chr8 140221458 140221512 + TRAPPC9-TRAPPC9 +chr8 140024033 140024081 - chr8 140252775 140252925 + TRAPPC9-TRAPPC9 +chr7 69899390 69899499 - chr7 70118131 70118152 + AUTS2-AUTS2 +chr7 69899390 69899499 - chr7 70134535 70134764 + AUTS2-AUTS2 +chr7 69899390 69899499 - chr7 70435751 70435752 + AUTS2-AUTS2 +chr7 69899390 69899499 - chr7 70698568 70698595 + AUTS2-AUTS2 +chr7 69899390 69899499 - chr7 70762868 70762897 + AUTS2-AUTS2 +chr7 69599962 69599963 - chr7 69816399 69816400 + AUTS2-AUTS2 +chr7 69599962 69599963 - chr7 69825779 69825780 + AUTS2-AUTS2 +chr7 69599962 69599963 - chr7 69899289 69899290 + AUTS2-AUTS2 +chr7 69599962 69599963 - chr7 70118131 70118132 + AUTS2-AUTS2 +chr7 70134571 70134572 - chr7 70435751 70435752 + AUTS2-AUTS2 +chr7 70134571 70134572 - chr7 70698568 70698569 + AUTS2-AUTS2 +chr7 70435781 70435782 - chr7 70698568 70698569 + AUTS2-AUTS2 +chr10 5639724 5639725 + chrX 31863019 31863020 + +chrX 31134194 31134195 - chrX 31627672 31627673 + DMD->DMD +chrX 31147518 31147519 - chrX 31929595 31929596 + DMD->DMD +chrX 31209699 31209700 - chrX 31627672 31627673 + DMD->DMD +chrX 31223121 31223122 - chrX 32155370 32155376 + DMD->DMD +chrX 31323658 31323659 - chrX 32155370 32155376 + DMD->DMD +chrX 31479103 31479104 - chrX 31729630 31729631 + DMD->DMD +chrX 31679586 31679587 - chrX 32216915 32216916 + DMD->DMD +chrX 31875201 31875375 - chrX 32216915 32216916 + DMD->DMD +chrX 31932227 31932228 - chrX 32155370 32155376 + DMD->DMD +chrX 32216915 32216916 + chrX 32348529 32348530 - DMD large circular +chrX 32849740 32849821 - chrX 33211281 33211296 + DMD->DMD +chrX 32849740 32849821 - chrX 33211281 33211296 + DMD->DMD +chrX 32849740 32849821 - chrX 33211281 33211296 + DMD->DMD +chrX 32849740 32849821 - chrX 33211281 33211296 + DMD->DMD +chrX 32849740 32849821 - chrX 33211281 33211296 + DMD->DMD +chrX 33078347 33078348 - chrX 33339258 33339259 + DMD->DMD +chr19 54353691 54354312 + chr22 34958203 34958231 - +chr17 34039134 34039315 - chr17 62565092 62565134 - TLK2-TLK2P1 +chr8 118379530 118379702 - chr8 118580713 118580800 + SAMD12-SAMD12 +chr8 118197722 118197736 - chr8 118439828 118439842 + SAMD12-SAMD12 +chr8 118379690 118379704 - chr8 118621800 118621814 + SAMD12-SAMD12 +chr8 118197650 118197734 - chr8 118439830 118439890 + SAMD12-SAMD12 +chr8 118379430 118379702 - chr8 118621800 118621880 + SAMD12-SAMD12 +chr8 118197530 118197735 - chr8 118580713 118580800 + SAMD12-SAMD12 +chr2 141254546 141254644 - chr2 142130642 142130794 + LRP1B-LRP1B +chr2 141254546 141254644 - chr2 141480395 141480491 + LRP1B-LRP1B +chr2 141254546 141254644 - chr2 141810278 141810284 + LRP1B-LRP1B +chr2 141429783 141429805 - chr2 141810278 141810284 + LRP1B-LRP1B +chr2 141480400 141480536 - chr2 142130642 142130800 + LRP1B-LRP1B +chr2 141480400 141480536 - chr2 141810278 141810284 + LRP1B-LRP1B +chr2 141502854 141502855 - chr2 141810278 141810284 + LRP1B-LRP1B +chr2 141546577 141546578 - chr2 141810278 141810284 + LRP1B-LRP1B +chr2 141549987 141549988 - chr2 141810278 141810284 + LRP1B-LRP1B +chr2 141810098 141810404 - chr2 142130642 142130800 + LRP1B-LRP1B +chr2 141810098 141810404 - chr2 142130642 142130800 + LRP1B-LRP1B +chr2 141810098 141810404 - chr2 142044326 142044327 + LRP1B-LRP1B +chr2 141810098 141810404 - chr2 142125269 142125270 + LRP1B-LRP1B +chr15 71411700 71411823 - chr15 71627093 71627094 + THSD4-THSD4 +chr15 71411700 71411823 - chr15 71660527 71660661 + THSD4-THSD4 +chr15 71242820 71243099 - chr15 71660527 71660661 + THSD4-THSD4 +chr15 71411700 71411780 + chr15 71660734 71660735 - THSD4 large circular +chr15 71141448 71141452 + chr15 71660734 71660735 - THSD4 large circular +chr15 71411686 71411690 + chr15 71660734 71660735 - THSD4 large circular +chr15 71411772 71411824 - chr15 71728547 71728561 + THSD4-THSD4 +chr15 44701372 44701833 - chr15 44949880 44950850 + SETBP1-SETBP1 +chr5 59215797 59215969 - chr5 59768251 59768391 + PDE4D-PDE4D +chr5 59215797 59215969 - chr5 59586327 59586361 + PDE4D-PDE4D +chr5 59215797 59215969 - chr5 59988486 59988621 + PDE4D-PDE4D +chr5 59215797 59215969 - chr5 60185555 60185600 + PDE4D-PDE4D +chr5 59215797 59215969 - chr5 59530326 59530327 + PDE4D-PDE4D +chr5 59215797 59215969 - chr5 59430293 59430294 + PDE4D-PDE4D +chr5 60185687 60185688 - chr5 60474480 60474481 + PDE4D-PDE4D +chr5 59038858 59038859 + chr5 59215968 59215969 - PDE4D large circular +chr5 59988487 59988488 + chr5 60185687 60185688 - PDE4D large circular +chr5 59988650 59988718 - chr5 60487941 60487971 + PDE4D-PDE4D +chr5 59685895 59685945 - chr5 60487941 60487971 + PDE4D-PDE4D +chr5 60185560 60185690 - chr5 60487941 60487971 + PDE4D-PDE4D +chr12 26786453 26786454 + chr13 52080889 52080890 - +chr12 26805727 26805728 + chr12 124871515 124871516 - +chr12 26481130 26481131 + chr12 26655852 26655853 - ITPR2 large circular +chr12 26550246 26550247 + chr12 26655852 26655853 - ITPR2 large circular +chr9 63400503 63401000 + chr22 22286044 22286472 + +chr9 63400503 63401000 - chr22 22286044 22286472 - +chr3 150492930 150492941 + chr18 63228520 63228535 - +chr3 174495670 174495700 - chr7 157217450 157217490 - +chr3 175627290 175627291 + chr3 175755418 175755419 - NAALADL2 large circular +chr3 175324174 175324175 + chr3 175627386 175627387 - NAALADL2 large circular +chr3 174737640 174737641 + chr3 174864090 174864091 - NAALADL2 large circular +chr3 174550600 174550640 - chr3 175096788 175097080 + NAALADL2-NAALADL2 +chr3 174859345 174859450 - chr3 175233928 175233975 + NAALADL2-NAALADL2 +chr3 174859345 174859450 - chr3 175096788 175097080 + NAALADL2-NAALADL2 +chr3 175097291 175097292 - chr3 175324174 175324175 + NAALADL2-NAALADL2 +chr3 175256500 175256532 - chr3 175463400 175463430 + NAALADL2-NAALADL2 +chr3 175471758 175471759 - chr3 175737305 175737306 + NAALADL2-NAALADL2 +chr3 175471758 175471759 - chr3 175803000 175803005 + NAALADL2-NAALADL2 +chr14 21188118 21188119 + chr22 23391631 23391632 + prtcl/005,019,022 +chr14 49586868 49586889 - chr22 21723051 21723072 - prtcl/024,008,014,022 +chr17 58805547 58805568 - chr22 15698174 15698195 + prtcl/026,007,042 +chr1 116740569 116740590 - chr22 29490126 29490147 - prtcl/007,022,025,038 +chr14 21188118 21188119 + chr22 23391631 23391632 + prtcl/026,005,019,022 +chr10 115215696 115215697 + chr10 115426302 115426303 - ATRNL1 lage circular +chr10 13858912 13858913 - chr10 14174011 14174012 + FRMD4A-FRMD4A new exon +chr10 76576148 76576149 - chr15 82845230 82845231 + prtcl/038,126,007 +chr10 78037187 78037228 - chrX 3113020 3113061 - prtcl/007,038,041,042,052 +chr1 116740559 116740600 - chr22 29490116 29490157 - prtcl/007,022,025,038,126,141,143 +chr1 156292378 156292439 - chr3 110878527 110878568 + prtcl/001,007,041 +chr11 85935622 85936014 + chr22 19175789 19176165 + prtcl/016,004,126 +chr12 10506275 10506296 + chrX 24057704 24057805 - prtcl/006,025,069 +chr12 15212281 15212302 - chr17 49295229 49295630 + prtcl/140,068,024,125 +chr1 23693864 23693925 - chr5 130990066 130990107 + prtcl/008,068,140,125,011 +chr12 53038210 53038611 - chr16 47565354 47565415 - prtcl/125,024,140,068 +chr12 77990102 77990123 + chr12 77994053 77994074 + could be population wide variant (small inversion) prtcl/140,015,031,036 +chr13 21298315 21298336 - chr20 25390726 25390767 - prtcl/019,015,036 +chr13 35110968 35110989 - chr15 20646443 20646484 - prtcl/015,007,032,141,143 +chr13 64958696 64958737 - chr14 92711861 92711922 + prtcl/145,032,141,027 +chr14 103341844 103341885 - chr20 34200654 34200715 + prtcl/145,027,013,015 +chr14 18966891 18966912 - chr22 15689422 15689443 + prtcl/007,125,145,013 +chr14 21188108 21188129 + chr22 23391621 23391642 + prtcl/005,019,022,145 +chr14 49586858 49586899 - chr22 21723051 21723072 - prtcl/024,008,014,022 +chr1 61088450 61088683 - chr1 61332509 61332570 + NFIA-NFIA +chr1 63774100 63774510 - chr1 64009302 64009355 + ROR1-ROR1 +chr16 89563023 89563104 - chr19 56217164 56217186 - prtcl/004,015,008,015,022,024 +chr17 34516886 34516907 - chr17 79048118 79048159 + prtcl/014,016,039,040 +chr17 58805547 58805568 - chr22 15698174 15698195 + prtcl/007,026,126 +chr1 92837624 92837645 - chr22 42776577 42776598 - prtcl/031,007,026,126 +chr20 26208429 26208490 - chr22_KI270733v1_random 168995 169056 - prtcl/016,025,038,147,148 +chr20 26209450 26209650 - chr21 8433850 8434050 - prtcl/141,126 +chr20 26209450 26209650 - chr22_KI270733v1_random 122850 123050 - prctl/025,014,026 +chr20 26209450 26209650 + chr22_KI270733v1_random 168000 168350 + prtcl/038 +chr20 8371379 8371430 - chr20 8628292 8628355 + PLCB1-PLCB1 +chr2 131684647 131684688 - chr14 19335477 19335538 - prtcl/032,007,026 +chr2 132274729 132274770 + chr3 132358003 132358064 + prctl/007,001,039 +chr2 135509583 135509645 - chr5 151804919 151804960 - prtcl/026,126,145,147 +chr21 8395943 8396494 + chr21 8440201 8440242 + prtcl/035,007,001,039 +chr21 8438727 8439157 - chr22 32089518 32089558 + prtcl/125,151 +chr2 185483081 185483102 - chr2 185729335 185729359 + prtcl/152,008,039,125 +chr2 192054978 192055019 + chr3 102553751 102553792 - prtcl/151,007,050 +chr2 192149204 192149225 - chr18 63702929 63702950 - prtcl/001,151,005 +chr2 197805050 197805342 - chr2 198083755 198086084 + PLCL1-PCLC1 +chr2 231427548 231427569 - chr15 92908982 92909183 - prtcl/037,014,005 +chr2 47161760 47161801 + chr13 41170903 41170944 - prtcl/151,003,035,003 +chr2 55234912 55234953 - chr6 113581726 113581767 + prtcl/004,025,003,001 +chr2 61189497 61189518 + chr19 4243214 4243235 - prtcl/013,151,001,003 +chr2 63706867 63706888 - chr19 52384767 52384868 - prtcl/011,003,024 +chr2 73898346 73898368 + chr16 2183080 2183101 - prtcl/039,025,001 +chr2 73898346 73898368 + chr21 29564441 29564462 - prtcl/149,025,001 +chr2 74740960 74740971 + chr17 38919028 38919039 + prtcl/007,008,039,141,143 +chr8 47085260 47085281 + chr14 19002353 19002374 - prtcl/125,151,141,143 +chr8 47085260 47085281 + chr14 19399402 19399423 + prtcl/125,151,141,143 +chr8 47085260 47085281 + chr22 15724969 15724990 - prtcl/125,151,141,143 +chr6 113401866 113401887 - chr14 24965330 24965351 + prtcl/005,140,005,007 +chr3 131968997 131969018 - chr3 131978033 131978054 - prtcl/001,015,032,148 +chr5 117925121 117925133 - chr5 118265352 118265364 + LINC02147-LINC02147 +chr5 10571014 10571035 + chr7 27150037 27150238 + prtcl/013,005,015,032,148 +chr5 168883285 168883339 - chr5 169193476 169193525 + SLIT3-SLIT3 +chr3 188883471 188883492 - chr20 56678190 56678211 + prtcl/033,001,004,032 +chr6 38345002 38345095 - chr6 38577598 38577650 + BTBD9-BTBD9 +chr7 82159837 82159858 - chr10 59143070 59143271 - prtcl/147,005,0148 +chr5 55444119 55444320 + chr12 49199677 49199698 + prtcl/149,148,005,015,032 +chr6 73518630 73518831 + chr15 52937807 52937828 - prtcl/025,001,007,015,031 +chr9 131414392 131414433 + chr14 35038495 35038516 + prtcl/031,032,151,026 +chr2 83877611 83877652 - chr7 64838341 64838953 + prtcl/031,003,038,013,015 +chr6 113861005 113861026 + chr21 26235606 26235627 + prtcl/038,013,015 +chr4 167000375 167000466 - chr4 167233982 167234150 + SPOCK3-SPOCK3 +chr3 62779341 62779362 - chr12 62965791 62965812 - prtcl/024,038,013,015 +chr5 53886450 53886716 - chr5 54113200 54113350 + ARL15-ARL15 +chr8 117837125 117837204 - chr8 118110082 118110224 + EXT1-EXT1 +chr8 101493484 101493505 + chr12 111055638 111055659 + prtcl/003,038,013,015,001 +chr8 119862583 119862984 + chr14 49586679 49587080 - prtcl/007,015,016,019 +chrX 124963817 124963818 - chrX 125185642 125185643 + TENM1 new exon +chr7 111413356 111413845 - chr12 107809426 107809757 + looks like real fusion prtcl/149,022,035 +chr6 144200376 144200397 - chr13 45337182 45337383 + prtcl/019,035,013,014 +chr6 28740259 32621911 + chr6_GL000255v2_alt 0 3881652 - variation in human population +chr6 28740259 32621911 - chr6_GL000255v2_alt 0 3881652 + variation in human population +chr6 37819968 37820019 - chr6 38061590 38061750 + ZFAND3-ZFAND3 +chr6 54775241 54775262 + chr12 25205680 25205781 + prtcl/149,013,014 +chr4 45724000 45724021 + chr12 53040262 53040463 - prtcl/001,035,014 +chr4 2031624 2031645 + chr18 58336577 58336618 + prtcl/148,014,026,027,031,032 +chr3 116086345 116086559 - chr3 116444875 116445010 + LSAMP-LSAMP +chr8 35235475 35235890 - chr8 35549289 35549500 + UNC5D-UNC5D +chr5 116562731 116562752 - chr5 150446919 150446940 - prtcl/025,003,006,007 +chr4 77421365 77421386 + chr15 36992057 36992078 + prtcl/007,015,020,026,027 +chr3 61562150 61562375 - chr3 61989622 61989785 + PTPRG-PTPRG +chr3 140175972 140176076 - chr3 140403626 140403804 + CLSTN2-CLSTN2 +chr8 59970452 59970473 + chr19 56494324 56494365 - prtcl/145,020,001,005,006 +chr3 184117340 184117441 + chr14 102082992 102083093 + prtcl/125,006,013,038,039 +chr3 170524077 170524098 + chr4 185504464 185504485 + prtcl/014,005,013,038,039,040 +chr8 89757560 89757581 - chr17 7715548 7715568 + prtcl/014,013,038,039 +chr9 33289240 33289261 + chr19 13140383 13140404 - prtcl/035,005,006,013,038,039 +chrX 132628100 132629095 - chrX 132956805 132957225 + HS6ST2-HS6ST2 +chr3 58115791 58115792 - chr3 58116742 58116743 - prtcl/015,005,006,013 +chrX 138857528 138857682 - chrX 139204056 139204250 + FGF13-FGF13 +chrX 68192918 68192919 + chrX 68299096 68299097 - PHN1 large circular +chr3 114693550 114693578 - chr3 114900301 114900324 + ZBTB20-ZBTB20 +chr3 132027601 132027802 - chr10 11434665 11434686 + prtcl/147,022,038,013 +chr3 132390413 132390532 - chr14 30617947 30618278 + prtcl/147005038 +chr3 132357281 132357302 - chr16 81605362 81605403 - prtcl/141,147,038,005
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blacklist-regions.hg38.bed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,2090 @@ +chr pos direction id comment +chrM 0 16570 + chrM +chrM 0 16570 - chrM +chr22 22687199 22687280 - s13304,s8828,s13419,s48452,s8612,s11338,s15680,s4836,s6408,s6411,s9064,s9608,s11341,s5930,s5950,s9592,s9777,s8984,s9584 +chr16 10532572 10532680 - s6046,s11756,s11326,s13308,s6046,s11375,s13304,s11385,s7249,s11354,s11354,s11374,s11378,s13302,s13310,s7250,s11380,s11359,s10010,s11355,s11365,s11368,s11369,s13307,s11359,s11326 +chr4 81594218 81594232 + s3297,s8979,s6721,s13298r2,s13418,s13761,s7239,s13302,s6408,s11385,s7316,s11743,s5946,s9770,s11366,s13307,s13625,s14455,s15681,s11386,s13626,s7310,s8977,s8980,s14436,s6727r1,s9066,s20343,s9775,s11745,s11750,s13754,s10011,s6719,s13761,s7318,s8616,s7318,s7454,s7239,s8616,s11391,s11402,s7220,s18749,s6408,s11397,s5946,s11385,s4954,s8978,s13755,s11754,s8980,s9775,s11764,s13302,s14442,s20401,s8981,s9544,s9585,s11368,s7239,s20405,s8615,s11324,s7454,s7454,s11751,s7318,s7454,s15679,s9584,s11326,s13428,s11368,s13418,s18037,s10011,s11359,s13622,s6016,s11367,s13633,s15680,s13299r2,s13766,s14447,s15679,s20345,s4970,s13298r2,s14442,s7310,s8620,s11743,s13749,s8828,s14455,s20344,s13770,s8620,s9464,s9596,s10014,s11340,s13622,s13749,s15680,s15681,s18037,s5942,s8830,s13299r2,s6727r1,s18031,s13754,s9464,s13761,s7239,s7454,s9464,s7454,s11326,s5934,s8620,s11745,s20344,s11359,s13632,s15681,s7427,s7427r2,s8615,s13296,s18017,s4951,s5938,s8832,s11756,s13766,s9772,s6733,s8979,s13632,s7250,s9067,s20400,s11762,s9544,s13418,s14441,s14432,s5945,s7240,s6730,s13625,s14455,s20400,s6722,s20405,s9067,s6731,s18759,s13629,s6409,s11393,s11743,s13304,s4951,s5938,s5950,s15680,s9758,s20343,s7454,s15679,s14441,s9755,s9065,s11393,s11750,s13770,s10014,s13298r1,s20342,s74092,s11355,s9464,s13761,s18259,s20344,s9575,s7250,s5934,s6046,s11354,s13311,s11756,s9544,s9596,s9772,s11325,s8828,s9064,s11361,s13298r1,s13298r2,s13428,s14441,s13299r1,s20342,s4970,s7427,s7427r2,s8984,s13311,s13358,s9596,s9065,s18017,s9065,s7318,s13296,s7454,s7239,s11340,s11756,s14441,s7314,s11354,s11325,s8615,s5950,s7454,s13755,s6409,s8616,s9473,s14436,s11366,s9578,s8616,s18259,s14441,s7454,s13633,s8982,s13761,s20345,s11754,s13754,s5950,s11361,s14441,s13302,s5938,s13632,s15681,s14441,s13761,s9473,s7318,s7314,s15681,s11326,s7318,s7428,s11326,s9004,s6411,s11324,s7239,s9596,s8977,s14441,s14441,s8652,s8616,s4841,s13761 +chr4 81594284 81594304 - s11750,s11326,s11324,s9578,s6727r1,s13761,s18758,s9066,s7239,s7239,s11326,s11366,s11326,s13622,s13761,s11326,s11354,s11367,s13298r1,s13766,s13770,s20404,s4958,s5946,s9066,s11324,s13633,s13311,s4954,s10011,s11324,s10014,s11326,s11745,s11751,s11326,s20342,s13296,s15679,s18259,s6046,s4970,s13622,s18020,s10014,s20345,s11326,s6721,s20344,s13761,s18748,s9473,s20345,s7239,s9473,s6046,s4970,s11326,s11324,s9473,s11326,s11326,s13632,s20401,s14447,s20345,s8616,s13422,s13623,s11326,s11326,s11326,s11326,s7314,s11391,s7239,s15680,s9473,s11324,s20345,s20345,s13297,s11325,s13358,s11325,s4954,s6720,s8652,s13428,s20345,s18017,s11324,s11326,s20345,s13296,s15680,s13766,s9065,s7314,s8615,s20345,s20345,s7239,s10014,s7239,s7318,s7318,s13761,s11324,s20342,s8652,s13418,s11326,s14441,s11324,s7427,s7427r2,s7239,s7239,s11368,s18037,s6719,s11326,s7454,s20345,s8828,s9596,s20345,s13299r2,s18759,s11326,s18259,s20343,s7239,s18017,s13299r1,s13633,s13749,s14441,s11751,s20345,s4970,s9464,s7318,s20342,s7314,s8615,s11367,s13749,s13632,s8982,s8984,s11324,s13622,s20345,s13626,s14442,s6046,s11326,s13296,s13358,s9063,s13302,s8620,s13311,s14441,s9578,s10014,s13761,s8620,s11324,s11324,s11326 +chr1 1883668 1883765 + rRNA_region_0 LSU-rRNA_Hsa +chr1 7816373 7816413 + rRNA_region_1 5S +chr1 9437707 9437778 - rRNA_region_2 5S +chr1 13596638 13596677 - rRNA_region_3 5S +chr1 13623210 13623284 - rRNA_region_4 5S +chr1 15650369 15650411 - rRNA_region_5 5S +chr1 25157017 25157130 - rRNA_region_6 LSU-rRNA_Hsa +chr1 27916098 27916143 - rRNA_region_7 LSU-rRNA_Hsa +chr1 30329251 30329330 - rRNA_region_8 LSU-rRNA_Hsa +chr1 31110694 31110745 + rRNA_region_9 5S +chr1 31378559 31378598 - rRNA_region_10 5S +chr1 32367668 32367748 + rRNA_region_11 SSU-rRNA_Hsa +chr1 34112949 34113038 + rRNA_region_12 5S +chr1 36702638 36702680 - rRNA_region_13 5S +chr1 36849904 36849967 - rRNA_region_14 LSU-rRNA_Hsa +chr1 37264688 37264786 - rRNA_region_15 5S +chr1 38888816 38888864 - rRNA_region_16 LSU-rRNA_Hsa +chr1 39154206 39154296 - rRNA_region_17 5S +chr1 39207761 39207803 + rRNA_region_18 5S +chr1 41466936 41467027 - rRNA_region_19 5S +chr1 42313627 42313800 + rRNA_region_20 LSU-rRNA_Hsa +chr1 42490645 42490688 + rRNA_region_21 5S +chr1 42580101 42580502 + rRNA_region_22 LSU-rRNA_Hsa +chr1 42749792 42749972 - rRNA_region_23 LSU-rRNA_Hsa +chr1 43196416 43196506 + rRNA_region_24 5S +chr1 44014878 44014921 - rRNA_region_25 5S +chr1 44670386 44670465 - rRNA_region_26 5S +chr1 44932322 44932424 + rRNA_region_27 5S +chr1 45489874 45489926 - rRNA_region_28 5S +chr1 46436796 46436894 - rRNA_region_29 LSU-rRNA_Hsa +chr1 51058633 51058675 - rRNA_region_30 5S +chr1 51973410 51973505 + rRNA_region_31 5S +chr1 58747990 58748099 + rRNA_region_32 5S +chr1 63186333 63186427 - rRNA_region_33 5S +chr1 63890861 63890900 + rRNA_region_34 5S +chr1 64689119 64689158 - rRNA_region_35 5S +chr1 66550819 66550862 - rRNA_region_36 5S +chr1 67992807 67992951 - rRNA_region_37 SSU-rRNA_Hsa +chr1 67996224 67996791 - rRNA_region_38 SSU-rRNA_Hsa +chr1 68796366 68796420 - rRNA_region_39 5S +chr1 72176950 72176992 - rRNA_region_40 5S +chr1 73749535 73749626 - rRNA_region_41 5S +chr1 75774651 75774785 - rRNA_region_42 LSU-rRNA_Hsa +chr1 77614868 77614940 + rRNA_region_43 5S +chr1 77779897 77779987 + rRNA_region_44 5S +chr1 78094805 78094905 - rRNA_region_45 5S +chr1 78375188 78375267 - rRNA_region_46 5S +chr1 80385407 80385448 + rRNA_region_47 5S +chr1 85883677 85883797 - rRNA_region_48 5S +chr1 87453283 87453373 - rRNA_region_49 5S +chr1 88560142 88560183 - rRNA_region_50 5S +chr1 91387228 91387590 - rRNA_region_51 LSU-rRNA_Hsa +chr1 92189752 92189809 + rRNA_region_52 5S +chr1 92507170 92507245 - rRNA_region_53 LSU-rRNA_Hsa +chr1 93488330 93488452 - rRNA_region_54 5S +chr1 95089178 95089228 + rRNA_region_55 5S +chr1 99806382 99806535 + rRNA_region_56 SSU-rRNA_Hsa +chr1 105431075 105431119 + rRNA_region_57 5S +chr1 107570449 107571011 - rRNA_region_58 LSU-rRNA_Hsa +chr1 107571030 107571107 - rRNA_region_59 LSU-rRNA_Hsa +chr1 109243558 109243671 + rRNA_region_60 LSU-rRNA_Hsa +chr1 109577601 109577675 + rRNA_region_61 5S +chr1 111041833 111041923 + rRNA_region_62 5S +chr1 116962374 116962452 - rRNA_region_63 5S +chr1 118264401 118264489 - rRNA_region_64 5S +chr1 120001260 120001502 - rRNA_region_65 LSU-rRNA_Hsa +chr1 120561961 120562003 + rRNA_region_66 5S +chr1 120789061 120789303 + rRNA_region_67 LSU-rRNA_Hsa +chr1 121411378 121411419 - rRNA_region_68 5S +chr1 143439606 143439693 + rRNA_region_69 5S +chr1 144265218 144265305 + rRNA_region_70 5S +chr1 144701070 144701157 - rRNA_region_71 5S +chr1 145828195 145828257 + rRNA_region_72 5S +chr1 146160703 146160945 - rRNA_region_73 LSU-rRNA_Hsa +chr1 146539577 146539666 - rRNA_region_74 5S +chr1 148193712 148193801 + rRNA_region_75 5S +chr1 148611621 148611863 - rRNA_region_76 LSU-rRNA_Hsa +chr1 148948913 148948955 - rRNA_region_77 5S +chr1 149459404 149459646 + rRNA_region_78 LSU-rRNA_Hsa +chr1 150266793 150266884 - rRNA_region_79 LSU-rRNA_Hsa +chr1 153901875 153901917 + rRNA_region_80 5S +chr1 153938785 153938827 + rRNA_region_81 5S +chr1 157170022 157170097 + rRNA_region_82 LSU-rRNA_Hsa +chr1 159178472 159178562 + rRNA_region_83 5S +chr1 160175818 160175869 - rRNA_region_84 5S +chr1 162338642 162338722 + rRNA_region_85 5S +chr1 163468515 163468605 - rRNA_region_86 5S +chr1 163509483 163509572 + rRNA_region_87 5S +chr1 164869165 164869205 + rRNA_region_88 5S +chr1 166042243 166042350 + rRNA_region_89 5S +chr1 166671059 166671122 + rRNA_region_90 LSU-rRNA_Hsa +chr1 167005958 167006079 + rRNA_region_91 5S +chr1 168826686 168826793 + rRNA_region_92 SSU-rRNA_Hsa +chr1 169067263 169067340 + rRNA_region_93 5S +chr1 169909550 169909773 - rRNA_region_94 LSU-rRNA_Hsa +chr1 171713440 171713482 - rRNA_region_95 5S +chr1 173721645 173721806 + rRNA_region_96 LSU-rRNA_Hsa +chr1 173921069 173921147 + rRNA_region_97 5S +chr1 173969315 173969436 - rRNA_region_98 5S +chr1 174765280 174765322 + rRNA_region_99 5S +chr1 175693701 175693746 + rRNA_region_100 5S +chr1 176982529 176982573 + rRNA_region_101 5S +chr1 178560912 178561001 + rRNA_region_102 5S +chr1 181771565 181771655 + rRNA_region_103 5S +chr1 182212452 182212502 - rRNA_region_104 LSU-rRNA_Hsa +chr1 182944404 182944489 - rRNA_region_105 5S +chr1 185014948 185015067 - rRNA_region_106 5S +chr1 186372627 186372717 + rRNA_region_107 5S +chr1 189666176 189666255 - rRNA_region_108 5S +chr1 189777914 189777959 - rRNA_region_109 5S +chr1 192970797 192970838 + rRNA_region_110 5S +chr1 198084500 198084539 + rRNA_region_111 5S +chr1 200459648 200459784 - rRNA_region_112 LSU-rRNA_Hsa +chr1 204562410 204562521 - rRNA_region_113 5S +chr1 204707340 204707428 - rRNA_region_114 5S +chr1 207186292 207186344 + rRNA_region_115 5S +chr1 207502385 207502427 - rRNA_region_116 5S +chr1 207540740 207540790 - rRNA_region_117 5S +chr1 207559297 207559347 - rRNA_region_118 5S +chr1 207576348 207576398 - rRNA_region_119 5S +chr1 207675333 207675376 - rRNA_region_120 5S +chr1 207708930 207708980 - rRNA_region_121 5S +chr1 207830305 207830431 - rRNA_region_122 5S +chr1 208590529 208590633 + rRNA_region_123 5S +chr1 211625710 211625774 - rRNA_region_124 LSU-rRNA_Hsa +chr1 211626541 211626724 - rRNA_region_125 LSU-rRNA_Hsa +chr1 219662674 219662716 + rRNA_region_126 5S +chr1 219761788 219761873 + rRNA_region_127 5S +chr1 222349426 222349537 + rRNA_region_128 LSU-rRNA_Hsa +chr1 222696538 222696628 - rRNA_region_129 5S +chr1 224663201 224663257 - rRNA_region_130 5S +chr1 225261910 225261950 + rRNA_region_131 5S +chr1 226468142 226468184 - rRNA_region_132 5S +chr1 227561180 227561302 + rRNA_region_133 5S +chr1 228555792 228555903 + rRNA_region_134 5S +chr1 228558283 228558364 - rRNA_region_135 5S +chr1 228610265 228610386 - rRNA_region_136 5S +chr1 228612506 228612627 - rRNA_region_137 5S +chr1 228614747 228614868 - rRNA_region_138 5S +chr1 228616988 228617109 - rRNA_region_139 5S +chr1 228619229 228619350 - rRNA_region_140 5S +chr1 228621444 228621565 - rRNA_region_141 5S +chr1 228623664 228623785 - rRNA_region_142 5S +chr1 228625906 228626027 - rRNA_region_143 5S +chr1 228628145 228628266 - rRNA_region_144 5S +chr1 228630387 228630508 - rRNA_region_145 5S +chr1 228632628 228632749 - rRNA_region_146 5S +chr1 228634868 228634989 - rRNA_region_147 5S +chr1 228637093 228637214 - rRNA_region_148 5S +chr1 228639334 228639455 - rRNA_region_149 5S +chr1 228641565 228641686 - rRNA_region_150 5S +chr1 228643806 228643927 - rRNA_region_151 5S +chr1 228646037 228646158 - rRNA_region_152 5S +chr1 228647910 228648032 - rRNA_region_153 5S +chr1 229549904 229550024 + rRNA_region_154 5S +chr1 230820249 230820360 + rRNA_region_155 5S +chr1 231281447 231281528 - rRNA_region_156 5S +chr1 231374319 231374512 - rRNA_region_157 LSU-rRNA_Hsa +chr1 234301245 234301283 - rRNA_region_158 5S +chr1 237603008 237603464 + rRNA_region_159 LSU-rRNA_Hsa +chr1 237817127 237817166 + rRNA_region_160 5S +chr1 238676587 238676637 - rRNA_region_161 5S +chr1 239700862 239700901 + rRNA_region_162 5S +chr1 241945558 241945689 - rRNA_region_163 LSU-rRNA_Hsa +chr1 241955080 241955118 + rRNA_region_164 5S +chr1 242134271 242134382 + rRNA_region_165 5S +chr1 247204567 247204661 - rRNA_region_166 5S +chr1 247440659 247440697 + rRNA_region_167 5S +chr2 2738070 2738112 + rRNA_region_168 5S +chr2 11517397 11517504 + rRNA_region_169 5S +chr2 11561664 11561779 - rRNA_region_170 5S +chr2 12045746 12045788 - rRNA_region_171 5S +chr2 15531368 15531418 + rRNA_region_172 5S +chr2 20286885 20286927 + rRNA_region_173 5S +chr2 20401636 20401724 - rRNA_region_174 5S +chr2 22338885 22339003 - rRNA_region_175 5S +chr2 22652699 22652749 - rRNA_region_176 5S +chr2 24364499 24364544 + rRNA_region_177 LSU-rRNA_Hsa +chr2 24364636 24364770 + rRNA_region_178 LSU-rRNA_Hsa +chr2 24564627 24564738 - rRNA_region_179 5S +chr2 26571733 26571775 - rRNA_region_180 5S +chr2 27901703 27901745 + rRNA_region_181 5S +chr2 28558048 28558091 - rRNA_region_182 5S +chr2 28683975 28684056 + rRNA_region_183 5S +chr2 31228311 31228402 + rRNA_region_184 5S +chr2 32117321 32117462 + rRNA_region_185 LSU-rRNA_Hsa +chr2 32844143 32844208 + rRNA_region_186 SSU-rRNA_Hsa +chr2 33234362 33234404 - rRNA_region_187 5S +chr2 33285798 33285887 - rRNA_region_188 5S +chr2 33332897 33332984 + rRNA_region_189 5S +chr2 34857651 34857694 - rRNA_region_190 5S +chr2 37078107 37078165 + rRNA_region_191 SSU-rRNA_Hsa +chr2 37317797 37317887 - rRNA_region_192 5S +chr2 44865885 44865927 - rRNA_region_193 5S +chr2 47186931 47186970 + rRNA_region_194 5S +chr2 48342686 48342728 + rRNA_region_195 5S +chr2 49969666 49969756 - rRNA_region_196 5S +chr2 53843928 53843976 + rRNA_region_197 LSU-rRNA_Hsa +chr2 53946413 53946455 + rRNA_region_198 5S +chr2 56235231 56235330 - rRNA_region_199 5S +chr2 59322179 59322268 + rRNA_region_200 5S +chr2 59603595 59603824 - rRNA_region_201 LSU-rRNA_Hsa +chr2 59694761 59694851 + rRNA_region_202 5S +chr2 60998751 60998838 + rRNA_region_203 5S +chr2 61665357 61665424 + rRNA_region_204 LSU-rRNA_Hsa +chr2 63208791 63209186 - rRNA_region_205 LSU-rRNA_Hsa +chr2 63209240 63209505 - rRNA_region_206 LSU-rRNA_Hsa +chr2 63770208 63770250 + rRNA_region_207 5S +chr2 64875962 64876020 - rRNA_region_208 LSU-rRNA_Hsa +chr2 69181923 69182003 - rRNA_region_209 5S +chr2 72262465 72262516 + rRNA_region_210 5S +chr2 73626878 73626934 - rRNA_region_211 5S +chr2 73687217 73687273 - rRNA_region_212 5S +chr2 73968117 73968205 - rRNA_region_213 5S +chr2 76772908 76773001 + rRNA_region_214 5S +chr2 78701595 78701866 + rRNA_region_215 LSU-rRNA_Hsa +chr2 81496237 81496327 - rRNA_region_216 5S +chr2 87492610 87492655 + rRNA_region_217 LSU-rRNA_Hsa +chr2 89600572 89600659 + rRNA_region_218 5S +chr2 91674858 91674945 + rRNA_region_219 5S +chr2 96956725 96956815 - rRNA_region_220 5S +chr2 97304700 97304806 - rRNA_region_221 5S +chr2 97403695 97403801 + rRNA_region_222 5S +chr2 98592213 98592289 - rRNA_region_223 LSU-rRNA_Hsa +chr2 100404565 100404602 - rRNA_region_224 5S +chr2 100552651 100552690 - rRNA_region_225 5S +chr2 111457570 111457615 - rRNA_region_226 LSU-rRNA_Hsa +chr2 114317697 114317739 - rRNA_region_227 5S +chr2 114828202 114828245 + rRNA_region_228 5S +chr2 114937440 114937704 - rRNA_region_229 LSU-rRNA_Hsa +chr2 114937714 114937805 + rRNA_region_230 5S +chr2 115752159 115752216 - rRNA_region_231 5S +chr2 116242739 116242777 + rRNA_region_232 5S +chr2 117023203 117023349 + rRNA_region_233 LSU-rRNA_Hsa +chr2 117891948 117891986 + rRNA_region_234 5S +chr2 121078621 121078952 + rRNA_region_235 SSU-rRNA_Hsa +chr2 121799962 121800005 - rRNA_region_236 5S +chr2 124932914 124932993 + rRNA_region_237 5S +chr2 127291567 127291807 - rRNA_region_238 LSU-rRNA_Hsa +chr2 127291830 127291912 - rRNA_region_239 LSU-rRNA_Hsa +chr2 127292264 127292289 - rRNA_region_240 LSU-rRNA_Hsa +chr2 128445078 128445192 - rRNA_region_241 5S +chr2 130826667 130826718 - rRNA_region_242 5S +chr2 132254346 132256195 - rRNA_region_243 SSU-rRNA_Hsa +chr2 132278677 132281663 - rRNA_region_244 LSU-rRNA_Hsa +chr2 134231195 134231284 + rRNA_region_245 5S +chr2 136863472 136863516 + rRNA_region_246 5S +chr2 137512124 137512212 - rRNA_region_247 5S +chr2 139732661 139732703 - rRNA_region_248 5S +chr2 142680431 142680473 - rRNA_region_249 5S +chr2 147713474 147713554 - rRNA_region_250 5S +chr2 148467506 148467547 + rRNA_region_251 5S +chr2 154590409 154590508 + rRNA_region_252 5S +chr2 158449402 158449450 - rRNA_region_253 5S +chr2 158449748 158449802 - rRNA_region_254 5S +chr2 158583879 158584285 - rRNA_region_255 LSU-rRNA_Hsa +chr2 159593884 159593949 - rRNA_region_256 5S +chr2 160014398 160014440 + rRNA_region_257 5S +chr2 160654743 160654780 - rRNA_region_258 5S +chr2 162496936 162497025 + rRNA_region_259 5S +chr2 162718204 162718247 - rRNA_region_260 5S +chr2 164150153 164150196 + rRNA_region_261 5S +chr2 164150207 164150250 + rRNA_region_262 5S +chr2 164858431 164858539 + rRNA_region_263 5S +chr2 164895687 164895777 - rRNA_region_264 5S +chr2 169343402 169343489 - rRNA_region_265 LSU-rRNA_Hsa +chr2 177138701 177138803 + rRNA_region_266 5S +chr2 182048821 182048912 + rRNA_region_267 5S +chr2 182491651 182491691 + rRNA_region_268 5S +chr2 188276755 188276844 - rRNA_region_269 5S +chr2 190537921 190538060 - rRNA_region_270 LSU-rRNA_Hsa +chr2 193519311 193519360 - rRNA_region_271 5S +chr2 194343992 194344034 + rRNA_region_272 5S +chr2 194729694 194729736 + rRNA_region_273 5S +chr2 197160699 197160814 + rRNA_region_274 5S +chr2 198601546 198601588 + rRNA_region_275 5S +chr2 200259735 200259794 + rRNA_region_276 SSU-rRNA_Hsa +chr2 200849042 200849144 - rRNA_region_277 5S +chr2 201929180 201929220 + rRNA_region_278 5S +chr2 202346265 202346374 - rRNA_region_279 LSU-rRNA_Hsa +chr2 208054160 208054257 - rRNA_region_280 5S +chr2 208920544 208920664 - rRNA_region_281 5S +chr2 209572462 209572557 + rRNA_region_282 LSU-rRNA_Hsa +chr2 209721931 209722020 - rRNA_region_283 5S +chr2 211535652 211535742 + rRNA_region_284 5S +chr2 213258112 213258160 + rRNA_region_285 5S +chr2 213501013 213501122 - rRNA_region_286 5S +chr2 213772302 213772378 + rRNA_region_287 5S +chr2 214707332 214707374 - rRNA_region_288 5S +chr2 216793516 216793600 - rRNA_region_289 5S +chr2 222235623 222235774 + rRNA_region_290 LSU-rRNA_Hsa +chr2 225022326 225022409 - rRNA_region_291 SSU-rRNA_Hsa +chr2 227763063 227763152 - rRNA_region_292 5S +chr2 228596210 228596252 + rRNA_region_293 5S +chr2 229151036 229151107 + rRNA_region_294 LSU-rRNA_Hsa +chr2 229180771 229180922 - rRNA_region_295 LSU-rRNA_Hsa +chr2 229180914 229181018 - rRNA_region_296 LSU-rRNA_Hsa +chr2 231245354 231245476 + rRNA_region_297 LSU-rRNA_Hsa +chr2 231822424 231822467 + rRNA_region_298 5S +chr2 234189597 234189639 + rRNA_region_299 5S +chr2 235026955 235026998 - rRNA_region_300 5S +chr2 241584967 241585057 + rRNA_region_301 5S +chr3 5024743 5024795 + rRNA_region_302 5S +chr3 9134268 9134373 - rRNA_region_303 LSU-rRNA_Hsa +chr3 12155030 12155071 - rRNA_region_304 5S +chr3 12326811 12326853 - rRNA_region_305 5S +chr3 12511093 12511211 - rRNA_region_306 5S +chr3 14394647 14394759 + rRNA_region_307 5S +chr3 15303617 15303683 + rRNA_region_308 LSU-rRNA_Hsa +chr3 18148238 18148278 + rRNA_region_309 5S +chr3 18229710 18229897 + rRNA_region_310 LSU-rRNA_Hsa +chr3 19825951 19825993 + rRNA_region_311 5S +chr3 22863505 22863618 - rRNA_region_312 LSU-rRNA_Hsa +chr3 23726591 23726662 + rRNA_region_313 LSU-rRNA_Hsa +chr3 24021587 24021649 + rRNA_region_314 LSU-rRNA_Hsa +chr3 25025006 25025093 + rRNA_region_315 5S +chr3 25352292 25352392 - rRNA_region_316 5S +chr3 27517353 27517398 + rRNA_region_317 5S +chr3 27847725 27847871 - rRNA_region_318 SSU-rRNA_Hsa +chr3 28083269 28083311 - rRNA_region_319 5S +chr3 29857745 29857806 - rRNA_region_320 5S +chr3 30031251 30031296 - rRNA_region_321 5S +chr3 31228714 31228803 + rRNA_region_322 5S +chr3 33492008 33492098 - rRNA_region_323 5S +chr3 37341648 37341738 + rRNA_region_324 5S +chr3 41384522 41384572 - rRNA_region_325 5S +chr3 44322668 44322704 - rRNA_region_326 5S +chr3 45453275 45453360 - rRNA_region_327 LSU-rRNA_Hsa +chr3 46458393 46458449 - rRNA_region_328 5S +chr3 46652283 46652325 + rRNA_region_329 5S +chr3 49076218 49076522 + rRNA_region_330 LSU-rRNA_Hsa +chr3 49411203 49411244 - rRNA_region_331 5S +chr3 49412752 49412818 + rRNA_region_332 5S +chr3 49467144 49467231 - rRNA_region_333 5S +chr3 49950023 49950469 + rRNA_region_334 SSU-rRNA_Hsa +chr3 50419781 50419901 + rRNA_region_335 5S +chr3 50524561 50524603 + rRNA_region_336 5S +chr3 50758507 50758548 + rRNA_region_337 5S +chr3 51694462 51694582 - rRNA_region_338 5S +chr3 56185125 56185224 + rRNA_region_339 5S +chr3 57814123 57814183 - rRNA_region_340 LSU-rRNA_Hsa +chr3 61082874 61082964 - rRNA_region_341 5S +chr3 61632531 61632573 - rRNA_region_342 5S +chr3 61699197 61699237 - rRNA_region_343 5S +chr3 63545439 63545520 + rRNA_region_344 5S +chr3 67834405 67834536 - rRNA_region_345 LSU-rRNA_Hsa +chr3 68882967 68883045 + rRNA_region_346 5S +chr3 69231033 69231129 + rRNA_region_347 5S +chr3 72691722 72691811 - rRNA_region_348 5S +chr3 72745796 72745836 + rRNA_region_349 5S +chr3 79109915 79109955 + rRNA_region_350 SSU-rRNA_Hsa +chr3 79787732 79787817 + rRNA_region_351 5S +chr3 84120231 84120302 + rRNA_region_352 LSU-rRNA_Hsa +chr3 94519113 94519155 - rRNA_region_353 5S +chr3 99900473 99900515 - rRNA_region_354 5S +chr3 100420167 100420221 - rRNA_region_355 5S +chr3 106837265 106837311 - rRNA_region_356 5S +chr3 108531246 108531521 + rRNA_region_357 LSU-rRNA_Hsa +chr3 114449744 114449796 - rRNA_region_358 5S +chr3 118266922 118267008 + rRNA_region_359 LSU-rRNA_Hsa +chr3 119529395 119529476 + rRNA_region_360 LSU-rRNA_Hsa +chr3 121741466 121741508 + rRNA_region_361 5S +chr3 122090621 122090669 + rRNA_region_362 5S +chr3 123015841 123015969 - rRNA_region_363 LSU-rRNA_Hsa +chr3 125058348 125058438 - rRNA_region_364 5S +chr3 125339856 125339898 - rRNA_region_365 5S +chr3 126564588 126564677 - rRNA_region_366 5S +chr3 127963607 127963697 + rRNA_region_367 5S +chr3 129920215 129920258 + rRNA_region_368 5S +chr3 131417843 131417998 - rRNA_region_369 SSU-rRNA_Hsa +chr3 133485850 133485918 - rRNA_region_370 5S +chr3 133486229 133486262 - rRNA_region_371 5S +chr3 133710085 133710175 - rRNA_region_372 5S +chr3 134783465 134783555 - rRNA_region_373 5S +chr3 136530419 136530468 - rRNA_region_374 5S +chr3 137518165 137518255 - rRNA_region_375 5S +chr3 138709570 138709649 + rRNA_region_376 SSU-rRNA_Hsa +chr3 139082435 139082523 - rRNA_region_377 LSU-rRNA_Hsa +chr3 142053627 142053692 + rRNA_region_378 LSU-rRNA_Hsa +chr3 142054902 142055388 + rRNA_region_379 LSU-rRNA_Hsa +chr3 142380474 142380512 - rRNA_region_380 5S +chr3 142591701 142591791 - rRNA_region_381 5S +chr3 142665816 142665905 - rRNA_region_382 LSU-rRNA_Hsa +chr3 144186903 144187020 - rRNA_region_383 5S +chr3 145224846 145224889 + rRNA_region_384 5S +chr3 148650637 148650757 + rRNA_region_385 LSU-rRNA_Hsa +chr3 149318668 149318764 - rRNA_region_386 5S +chr3 151188098 151188184 + rRNA_region_387 5S +chr3 155376006 155376049 - rRNA_region_388 5S +chr3 156106223 156106262 - rRNA_region_389 5S +chr3 157173915 157174040 - rRNA_region_390 5S +chr3 158846577 158846657 - rRNA_region_391 5S +chr3 158982962 158983009 + rRNA_region_392 LSU-rRNA_Hsa +chr3 160428422 160428525 + rRNA_region_393 LSU-rRNA_Hsa +chr3 160718438 160718523 + rRNA_region_394 5S +chr3 166508825 166508887 - rRNA_region_395 5S +chr3 169623545 169623587 + rRNA_region_396 5S +chr3 173011460 173011498 - rRNA_region_397 5S +chr3 174129188 174129290 + rRNA_region_398 LSU-rRNA_Hsa +chr3 176763228 176763313 + rRNA_region_399 5S +chr3 177311754 177311795 - rRNA_region_400 5S +chr3 178429199 178429289 - rRNA_region_401 5S +chr3 179351308 179351350 - rRNA_region_402 5S +chr3 179779555 179779718 + rRNA_region_403 LSU-rRNA_Hsa +chr3 180161886 180161977 - rRNA_region_404 5S +chr3 181822870 181822990 - rRNA_region_405 5S +chr3 183258326 183258416 - rRNA_region_406 5S +chr3 185461199 185461241 - rRNA_region_407 5S +chr3 186123318 186123359 - rRNA_region_408 5S +chr3 186253619 186253700 + rRNA_region_409 5S +chr3 188920158 188920200 - rRNA_region_410 5S +chr3 189547876 189547919 - rRNA_region_411 5S +chr3 192688549 192688600 + rRNA_region_412 5S +chr3 194473586 194473639 + rRNA_region_413 5S +chr3 196176878 196176926 - rRNA_region_414 LSU-rRNA_Hsa +chr3 197357756 197357808 - rRNA_region_415 5S +chr4 4345138 4345180 - rRNA_region_416 5S +chr4 7582459 7582637 + rRNA_region_417 LSU-rRNA_Hsa +chr4 8393014 8393126 + rRNA_region_418 5S +chr4 9411202 9411253 - rRNA_region_419 5S +chr4 9792771 9792859 - rRNA_region_420 5S +chr4 10115794 10115884 - rRNA_region_421 5S +chr4 10561711 10561834 + rRNA_region_422 LSU-rRNA_Hsa +chr4 11414048 11414160 - rRNA_region_423 5S +chr4 13724633 13724671 + rRNA_region_424 5S +chr4 19181781 19181869 - rRNA_region_425 5S +chr4 21718535 21718571 + rRNA_region_426 5S +chr4 29527665 29527705 - rRNA_region_427 5S +chr4 34852366 34852419 - rRNA_region_428 5S +chr4 38758800 38758892 - rRNA_region_429 5S +chr4 39936779 39936855 + rRNA_region_430 5S +chr4 40531242 40531284 - rRNA_region_431 5S +chr4 40990153 40990275 + rRNA_region_432 5S +chr4 42583616 42583709 - rRNA_region_433 SSU-rRNA_Hsa +chr4 56097390 56097479 + rRNA_region_434 5S +chr4 56331164 56331236 - rRNA_region_435 5S +chr4 67439992 67440051 + rRNA_region_436 5S +chr4 67442047 67442115 + rRNA_region_437 5S +chr4 69430863 69431035 - rRNA_region_438 LSU-rRNA_Hsa +chr4 71759525 71759616 - rRNA_region_439 5S +chr4 73771515 73771559 - rRNA_region_440 5S +chr4 73904445 73904535 - rRNA_region_441 5S +chr4 75886022 75886544 + rRNA_region_442 LSU-rRNA_Hsa +chr4 76515867 76516022 + rRNA_region_443 LSU-rRNA_Hsa +chr4 76762006 76762088 + rRNA_region_444 5S +chr4 77208404 77208735 - rRNA_region_445 LSU-rRNA_Hsa +chr4 77212297 77212397 - rRNA_region_446 LSU-rRNA_Hsa +chr4 79875805 79875885 - rRNA_region_447 SSU-rRNA_Hsa +chr4 86047088 86047243 - rRNA_region_448 LSU-rRNA_Hsa +chr4 91264681 91264769 - rRNA_region_449 5S +chr4 93820189 93820261 + rRNA_region_450 5S +chr4 103164920 103164979 - rRNA_region_451 5S +chr4 103744578 103744623 + rRNA_region_452 5S +chr4 107003225 107003526 - rRNA_region_453 LSU-rRNA_Hsa +chr4 107003531 107003747 - rRNA_region_454 LSU-rRNA_Hsa +chr4 116299757 116299846 + rRNA_region_455 LSU-rRNA_Hsa +chr4 119237369 119237535 + rRNA_region_456 LSU-rRNA_Hsa +chr4 122598670 122598721 - rRNA_region_457 5S +chr4 123157615 123157666 - rRNA_region_458 5S +chr4 125750423 125750481 + rRNA_region_459 5S +chr4 130506668 130506775 - rRNA_region_460 5S +chr4 133161759 133161866 - rRNA_region_461 LSU-rRNA_Hsa +chr4 133788842 133789301 + rRNA_region_462 LSU-rRNA_Hsa +chr4 141248933 141249070 + rRNA_region_463 LSU-rRNA_Hsa +chr4 146447185 146447235 - rRNA_region_464 5S +chr4 147745344 147745417 - rRNA_region_465 5S +chr4 148557946 148558037 + rRNA_region_466 5S +chr4 149495864 149496032 + rRNA_region_467 SSU-rRNA_Hsa +chr4 149847917 149848149 + rRNA_region_468 LSU-rRNA_Hsa +chr4 149907559 149907649 + rRNA_region_469 5S +chr4 150402225 150402267 - rRNA_region_470 5S +chr4 150772922 150772964 + rRNA_region_471 5S +chr4 150967529 150967545 - rRNA_region_472 5S +chr4 150970705 150970778 - rRNA_region_473 5S +chr4 151971528 151971599 - rRNA_region_474 5S +chr4 151972024 151972043 - rRNA_region_475 5S +chr4 153238602 153238767 + rRNA_region_476 SSU-rRNA_Hsa +chr4 154429183 154429247 + rRNA_region_477 LSU-rRNA_Hsa +chr4 154604676 154604792 + rRNA_region_478 LSU-rRNA_Hsa +chr4 156445812 156445854 - rRNA_region_479 5S +chr4 161281763 161281845 - rRNA_region_480 SSU-rRNA_Hsa +chr4 166053187 166053293 - rRNA_region_481 5S +chr4 166142572 166142711 + rRNA_region_482 LSU-rRNA_Hsa +chr4 166143170 166143511 + rRNA_region_483 LSU-rRNA_Hsa +chr4 166918382 166918491 - rRNA_region_484 5S +chr4 177457138 177457228 - rRNA_region_485 5S +chr4 178406694 178406797 + rRNA_region_486 5S +chr4 190015137 190015257 + rRNA_region_487 5S +chr4 190017696 190017817 + rRNA_region_488 5S +chr5 3352915 3353044 - rRNA_region_489 LSU-rRNA_Hsa +chr5 6347606 6347641 - rRNA_region_490 5S +chr5 6658677 6658737 - rRNA_region_491 5S +chr5 6981834 6981876 - rRNA_region_492 5S +chr5 6982069 6982111 - rRNA_region_493 5S +chr5 7047226 7047337 + rRNA_region_494 5S +chr5 9760906 9760995 + rRNA_region_495 5S +chr5 10373929 10374976 + rRNA_region_496 SSU-rRNA_Hsa +chr5 10376523 10376654 + rRNA_region_497 SSU-rRNA_Hsa +chr5 10376719 10377035 + rRNA_region_498 SSU-rRNA_Hsa +chr5 14903351 14903393 - rRNA_region_499 5S +chr5 16033267 16033355 - rRNA_region_500 5S +chr5 16853993 16854087 + rRNA_region_501 5S +chr5 17156991 17157073 - rRNA_region_502 5S +chr5 25493237 25493267 - rRNA_region_503 5S +chr5 33134794 33134844 - rRNA_region_504 5S +chr5 33277860 33277953 - rRNA_region_505 5S +chr5 34038272 34038440 + rRNA_region_506 LSU-rRNA_Hsa +chr5 34802279 34802368 + rRNA_region_507 5S +chr5 34861954 34862127 + rRNA_region_508 LSU-rRNA_Hsa +chr5 35763024 35763066 - rRNA_region_509 5S +chr5 36485344 36485432 + rRNA_region_510 5S +chr5 38074824 38074867 + rRNA_region_511 5S +chr5 39397527 39397604 + rRNA_region_512 5S +chr5 41357001 41357090 - rRNA_region_513 SSU-rRNA_Hsa +chr5 44637923 44637974 + rRNA_region_514 5S +chr5 51886687 51886761 + rRNA_region_515 5S +chr5 52517845 52517945 - rRNA_region_516 LSU-rRNA_Hsa +chr5 53472859 53472915 + rRNA_region_517 LSU-rRNA_Hsa +chr5 55184937 55185027 - rRNA_region_518 5S +chr5 55777470 55777585 + rRNA_region_519 5S +chr5 56146765 56146846 - rRNA_region_520 5S +chr5 56260356 56260444 - rRNA_region_521 5S +chr5 56643403 56643500 + rRNA_region_522 5S +chr5 62814520 62814562 - rRNA_region_523 5S +chr5 64395210 64395300 - rRNA_region_524 5S +chr5 64718878 64718918 - rRNA_region_525 5S +chr5 66129055 66129248 - rRNA_region_526 LSU-rRNA_Hsa +chr5 66129245 66129401 - rRNA_region_527 LSU-rRNA_Hsa +chr5 66176584 66176627 - rRNA_region_528 5S +chr5 71493002 71493086 - rRNA_region_529 5S +chr5 71850917 71851115 + rRNA_region_530 LSU-rRNA_Hsa +chr5 76091710 76091797 - rRNA_region_531 5S +chr5 80650040 80650129 - rRNA_region_532 LSU-rRNA_Hsa +chr5 81447668 81447710 - rRNA_region_533 5S +chr5 81762216 81762259 - rRNA_region_534 5S +chr5 84846211 84846252 + rRNA_region_535 5S +chr5 86963146 86963188 - rRNA_region_536 5S +chr5 86963568 86963611 - rRNA_region_537 5S +chr5 88218264 88218306 - rRNA_region_538 5S +chr5 88274257 88274376 - rRNA_region_539 5S +chr5 91900992 91901034 - rRNA_region_540 5S +chr5 97389170 97389364 - rRNA_region_541 LSU-rRNA_Hsa +chr5 97990722 97990775 - rRNA_region_542 5S +chr5 100293755 100293798 + rRNA_region_543 5S +chr5 102131051 102131141 - rRNA_region_544 5S +chr5 103726372 103726515 + rRNA_region_545 LSU-rRNA_Hsa +chr5 105923020 105923114 - rRNA_region_546 5S +chr5 114399295 114399331 - rRNA_region_547 5S +chr5 115144963 115145002 + rRNA_region_548 5S +chr5 116818087 116818130 + rRNA_region_549 5S +chr5 118777230 118777279 + rRNA_region_550 5S +chr5 119072499 119072531 + rRNA_region_551 5S +chr5 119445720 119445835 + rRNA_region_552 5S +chr5 123654915 123655317 + rRNA_region_553 LSU-rRNA_Hsa +chr5 123655309 123655354 + rRNA_region_554 LSU-rRNA_Hsa +chr5 130114402 130114492 + rRNA_region_555 5S +chr5 132740942 132740984 + rRNA_region_556 5S +chr5 132848576 132848666 + rRNA_region_557 5S +chr5 136969214 136969304 - rRNA_region_558 5S +chr5 138133503 138133545 + rRNA_region_559 5S +chr5 138220502 138220544 - rRNA_region_560 5S +chr5 139012329 139012420 + rRNA_region_561 5S +chr5 139299852 139299961 + rRNA_region_562 5S +chr5 140507195 140507245 + rRNA_region_563 5S +chr5 140732086 140732174 - rRNA_region_564 5S +chr5 142120282 142120323 + rRNA_region_565 5S +chr5 146555982 146556104 + rRNA_region_566 LSU-rRNA_Hsa +chr5 146586110 146586200 - rRNA_region_567 5S +chr5 147420926 147420974 - rRNA_region_568 5S +chr5 149050702 149050741 + rRNA_region_569 5S +chr5 149473458 149473499 + rRNA_region_570 5S +chr5 149947488 149947579 - rRNA_region_571 5S +chr5 150926936 150926987 + rRNA_region_572 5S +chr5 151477457 151477577 - rRNA_region_573 5S +chr5 151875603 151875692 - rRNA_region_574 5S +chr5 152138406 152138449 - rRNA_region_575 5S +chr5 154335702 154335744 + rRNA_region_576 5S +chr5 155408562 155408800 + rRNA_region_577 LSU-rRNA_Hsa +chr5 155845436 155845527 + rRNA_region_578 5S +chr5 156084446 156084535 - rRNA_region_579 5S +chr5 157199880 157200049 + rRNA_region_580 LSU-rRNA_Hsa +chr5 158033225 158033273 - rRNA_region_581 5S +chr5 162879969 162879995 - rRNA_region_582 5S +chr5 163485206 163485247 - rRNA_region_583 5S +chr5 166805500 166805552 + rRNA_region_584 5S +chr5 168239583 168239646 - rRNA_region_585 5S +chr5 173216257 173216307 - rRNA_region_586 5S +chr5 173292533 173292623 - rRNA_region_587 5S +chr5 175114739 175115174 - rRNA_region_588 SSU-rRNA_Hsa +chr6 3079838 3079897 - rRNA_region_589 5S +chr6 3088719 3088809 - rRNA_region_590 5S +chr6 4427962 4428082 + rRNA_region_591 5S +chr6 5830480 5830522 - rRNA_region_592 5S +chr6 7775969 7776006 + rRNA_region_593 5S +chr6 10752788 10752926 - rRNA_region_594 5S +chr6 12390042 12390091 + rRNA_region_595 5S +chr6 13988764 13988804 + rRNA_region_596 5S +chr6 14404281 14404323 - rRNA_region_597 5S +chr6 15035087 15035160 - rRNA_region_598 LSU-rRNA_Hsa +chr6 15522231 15522300 - rRNA_region_599 5S +chr6 16425257 16425320 - rRNA_region_600 LSU-rRNA_Hsa +chr6 17721784 17721898 - rRNA_region_601 5S +chr6 19438282 19438373 + rRNA_region_602 5S +chr6 22691087 22691226 - rRNA_region_603 LSU-rRNA_Hsa +chr6 22947964 22948121 - rRNA_region_604 LSU-rRNA_Hsa +chr6 23007782 23007871 - rRNA_region_605 LSU-rRNA_Hsa +chr6 23008839 23008924 + rRNA_region_606 LSU-rRNA_Hsa +chr6 27772329 27772371 - rRNA_region_607 5S +chr6 28156261 28156299 - rRNA_region_608 5S +chr6 28202033 28202093 + rRNA_region_609 LSU-rRNA_Hsa +chr6 29762139 29762208 - rRNA_region_610 LSU-rRNA_Hsa +chr6 31225279 31225318 + rRNA_region_611 SSU-rRNA_Hsa +chr6 32078535 32078627 - rRNA_region_612 5S +chr6 36564682 36564761 + rRNA_region_613 SSU-rRNA_Hsa +chr6 37344945 37344983 - rRNA_region_614 5S +chr6 37386590 37386792 + rRNA_region_615 LSU-rRNA_Hsa +chr6 41239517 41239625 - rRNA_region_616 5S +chr6 41924430 41924472 - rRNA_region_617 5S +chr6 42587804 42587846 + rRNA_region_618 5S +chr6 42642076 42642126 - rRNA_region_619 5S +chr6 43418093 43418180 + rRNA_region_620 5S +chr6 43657838 43657926 + rRNA_region_621 5S +chr6 43752842 43752951 + rRNA_region_622 5S +chr6 44977543 44977619 + rRNA_region_623 5S +chr6 47107136 47107175 - rRNA_region_624 5S +chr6 51185004 51185100 + rRNA_region_625 LSU-rRNA_Hsa +chr6 52932973 52933014 - rRNA_region_626 5S +chr6 66065096 66065186 + rRNA_region_627 5S +chr6 67467218 67467306 - rRNA_region_628 5S +chr6 68983362 68983406 + rRNA_region_629 5S +chr6 69473179 69473266 - rRNA_region_630 LSU-rRNA_Hsa +chr6 73306414 73306467 - rRNA_region_631 LSU-rRNA_Hsa +chr6 73475923 73476080 + rRNA_region_632 LSU-rRNA_Hsa +chr6 74168085 74168140 + rRNA_region_633 LSU-rRNA_Hsa +chr6 75865256 75865335 - rRNA_region_634 5S +chr6 76232298 76232337 - rRNA_region_635 5S +chr6 79454602 79454637 - rRNA_region_636 5S +chr6 81550978 81551040 + rRNA_region_637 LSU-rRNA_Hsa +chr6 81622200 81622299 + rRNA_region_638 5S +chr6 84283140 84283212 + rRNA_region_639 SSU-rRNA_Hsa +chr6 87639249 87639294 - rRNA_region_640 5S +chr6 90251326 90251368 - rRNA_region_641 5S +chr6 94064904 94064946 - rRNA_region_642 5S +chr6 99581219 99581289 - rRNA_region_643 LSU-rRNA_Hsa +chr6 104543270 104543314 + rRNA_region_644 5S +chr6 105324101 105324160 + rRNA_region_645 LSU-rRNA_Hsa +chr6 105519888 105519951 + rRNA_region_646 LSU-rRNA_Hsa +chr6 106449378 106449463 + rRNA_region_647 5S +chr6 108252400 108252488 + rRNA_region_648 5S +chr6 109688844 109688888 - rRNA_region_649 5S +chr6 109753165 109753255 - rRNA_region_650 5S +chr6 114151282 114151550 + rRNA_region_651 LSU-rRNA_Hsa +chr6 114220696 114220785 - rRNA_region_652 5S +chr6 114952048 114952099 - rRNA_region_653 5S +chr6 116178246 116178333 - rRNA_region_654 5S +chr6 117060686 117060796 + rRNA_region_655 5S +chr6 118027852 118027892 - rRNA_region_656 5S +chr6 118718836 118718871 + rRNA_region_657 5S +chr6 120262295 120262401 + rRNA_region_658 LSU-rRNA_Hsa +chr6 120686620 120686712 + rRNA_region_659 5S +chr6 125979875 125979934 - rRNA_region_660 5S +chr6 126065805 126065847 - rRNA_region_661 5S +chr6 127317884 127317973 - rRNA_region_662 5S +chr6 128698638 128698725 + rRNA_region_663 5S +chr6 129493396 129493489 - rRNA_region_664 5S +chr6 132080157 132080207 - rRNA_region_665 5S +chr6 133272806 133273028 + rRNA_region_666 LSU-rRNA_Hsa +chr6 134257034 134257144 + rRNA_region_667 5S +chr6 134674642 134674909 + rRNA_region_668 LSU-rRNA_Hsa +chr6 135275821 135275863 - rRNA_region_669 5S +chr6 136630239 136630328 + rRNA_region_670 5S +chr6 136738007 136738088 - rRNA_region_671 SSU-rRNA_Hsa +chr6 137037585 137037697 + rRNA_region_672 LSU-rRNA_Hsa +chr6 137306008 137306050 + rRNA_region_673 5S +chr6 138376915 138376957 + rRNA_region_674 5S +chr6 140158614 140158694 - rRNA_region_675 5S +chr6 143449808 143449887 + rRNA_region_676 5S +chr6 144370891 144371039 - rRNA_region_677 LSU-rRNA_Hsa +chr6 144371060 144371150 - rRNA_region_678 LSU-rRNA_Hsa +chr6 146340425 146340509 + rRNA_region_679 5S +chr6 150344017 150344145 + rRNA_region_680 SSU-rRNA_Hsa +chr6 151836845 151837121 - rRNA_region_681 SSU-rRNA_Hsa +chr6 152289945 152290033 - rRNA_region_682 5S +chr6 152410274 152410396 + rRNA_region_683 5S +chr6 152735799 152735837 - rRNA_region_684 5S +chr6 153159255 153159345 - rRNA_region_685 5S +chr6 153420440 153420526 + rRNA_region_686 5S +chr6 160786496 160786581 - rRNA_region_687 5S +chr6 161870085 161870175 - rRNA_region_688 5S +chr6 162052033 162052076 - rRNA_region_689 5S +chr6 163485192 163485233 - rRNA_region_690 5S +chr6 165409561 165409651 + rRNA_region_691 5S +chr6 170400317 170400430 + rRNA_region_692 5S +chr7 2985542 2985632 - rRNA_region_693 LSU-rRNA_Hsa +chr7 5131197 5131239 - rRNA_region_694 5S +chr7 5834775 5834817 + rRNA_region_695 5S +chr7 11954721 11954763 + rRNA_region_696 5S +chr7 14576115 14576157 - rRNA_region_697 5S +chr7 22298593 22298683 + rRNA_region_698 5S +chr7 22998059 22998101 - rRNA_region_699 5S +chr7 24132708 24132794 + rRNA_region_700 5S +chr7 25610291 25610333 + rRNA_region_701 5S +chr7 26053862 26053904 + rRNA_region_702 5S +chr7 33083611 33083715 + rRNA_region_703 LSU-rRNA_Hsa +chr7 33177739 33177831 + rRNA_region_704 5S +chr7 36410832 36410874 - rRNA_region_705 5S +chr7 36566398 36566495 + rRNA_region_706 LSU-rRNA_Hsa +chr7 36593683 36593769 - rRNA_region_707 5S +chr7 40262245 40262292 + rRNA_region_708 5S +chr7 44125793 44125872 - rRNA_region_709 5S +chr7 46080552 46080592 + rRNA_region_710 5S +chr7 48632764 48632809 + rRNA_region_711 LSU-rRNA_Hsa +chr7 55043102 55043141 - rRNA_region_712 5S +chr7 66550604 66550694 - rRNA_region_713 5S +chr7 67216447 67216492 - rRNA_region_714 5S +chr7 68321754 68321803 - rRNA_region_715 LSU-rRNA_Hsa +chr7 68723961 68724051 - rRNA_region_716 5S +chr7 69062383 69062801 + rRNA_region_717 LSU-rRNA_Hsa +chr7 71913741 71913855 - rRNA_region_718 5S +chr7 72597558 72597603 + rRNA_region_719 5S +chr7 74487446 74487540 - rRNA_region_720 5S +chr7 74596801 74596891 - rRNA_region_721 5S +chr7 74662928 74662981 - rRNA_region_722 LSU-rRNA_Hsa +chr7 78802462 78802569 - rRNA_region_723 LSU-rRNA_Hsa +chr7 79654110 79654198 + rRNA_region_724 5S +chr7 81276023 81276093 + rRNA_region_725 LSU-rRNA_Hsa +chr7 81333591 81333831 + rRNA_region_726 SSU-rRNA_Hsa +chr7 83017898 83018012 + rRNA_region_727 5S +chr7 88967900 88968010 + rRNA_region_728 5S +chr7 89776885 89776925 + rRNA_region_729 5S +chr7 92414183 92414225 + rRNA_region_730 5S +chr7 92806753 92806789 - rRNA_region_731 LSU-rRNA_Hsa +chr7 95243191 95243275 + rRNA_region_732 LSU-rRNA_Hsa +chr7 96711417 96711470 - rRNA_region_733 5S +chr7 99265832 99265874 - rRNA_region_734 5S +chr7 99468236 99468584 - rRNA_region_735 LSU-rRNA_Hsa +chr7 99614568 99614611 - rRNA_region_736 5S +chr7 102325078 102325190 - rRNA_region_737 LSU-rRNA_Hsa +chr7 104896321 104896411 + rRNA_region_738 5S +chr7 104990097 104990313 + rRNA_region_739 LSU-rRNA_Hsa +chr7 105001335 105001419 - rRNA_region_740 LSU-rRNA_Hsa +chr7 105325850 105326085 + rRNA_region_741 LSU-rRNA_Hsa +chr7 106781615 106781708 - rRNA_region_742 5S +chr7 106885672 106885724 - rRNA_region_743 5S +chr7 108286692 108286733 - rRNA_region_744 5S +chr7 114613784 114613905 - rRNA_region_745 5S +chr7 116944324 116944414 - rRNA_region_746 5S +chr7 120897225 120897300 - rRNA_region_747 5S +chr7 120981454 120981553 - rRNA_region_748 5S +chr7 121083727 121083817 - rRNA_region_749 5S +chr7 122763818 122763868 - rRNA_region_750 5S +chr7 126283097 126283139 + rRNA_region_751 5S +chr7 126519653 126519695 + rRNA_region_752 5S +chr7 128434939 128434980 + rRNA_region_753 5S +chr7 128478033 128478125 - rRNA_region_754 LSU-rRNA_Hsa +chr7 128697451 128697558 + rRNA_region_755 5S +chr7 128697690 128697744 + rRNA_region_756 5S +chr7 129756265 129756353 + rRNA_region_757 5S +chr7 130027276 130027364 + rRNA_region_758 5S +chr7 130602792 130602913 - rRNA_region_759 5S +chr7 132239804 132239846 - rRNA_region_760 5S +chr7 133987921 133988003 + rRNA_region_761 5S +chr7 136177445 136177552 - rRNA_region_762 LSU-rRNA_Hsa +chr7 140370438 140370527 + rRNA_region_763 5S +chr7 140386778 140386890 - rRNA_region_764 5S +chr7 140786926 140786977 + rRNA_region_765 5S +chr7 141407542 141407584 + rRNA_region_766 5S +chr7 143454020 143454133 + rRNA_region_767 LSU-rRNA_Hsa +chr7 147849883 147849962 + rRNA_region_768 5S +chr7 148784304 148784393 - rRNA_region_769 5S +chr7 150114739 150114778 + rRNA_region_770 5S +chr7 152592974 152593090 - rRNA_region_771 5S +chr7 153986040 153986079 - rRNA_region_772 5S +chr8 5111799 5111837 + rRNA_region_773 5S +chr8 3700491 3700571 + rRNA_region_774 5S +chr8 4181234 4181275 + rRNA_region_775 5S +chr8 7392421 7392511 + rRNA_region_776 5S +chr8 7919393 7919483 - rRNA_region_777 5S +chr8 8831418 8831487 + rRNA_region_778 5S +chr8 9876694 9876764 - rRNA_region_779 5S +chr8 10686568 10686681 + rRNA_region_780 5S +chr8 12087408 12087459 - rRNA_region_781 5S +chr8 12333656 12333707 - rRNA_region_782 5S +chr8 13536028 13536108 + rRNA_region_783 5S +chr8 13721989 13722035 + rRNA_region_784 5S +chr8 17748117 17748208 + rRNA_region_785 5S +chr8 19854543 19855019 + rRNA_region_786 LSU-rRNA_Hsa +chr8 20077129 20077231 + rRNA_region_787 LSU-rRNA_Hsa +chr8 20290173 20290263 + rRNA_region_788 5S +chr8 21598460 21598795 + rRNA_region_789 LSU-rRNA_Hsa +chr8 26136880 26136999 + rRNA_region_790 5S +chr8 28530410 28530499 + rRNA_region_791 5S +chr8 29048514 29048603 - rRNA_region_792 5S +chr8 29503329 29503366 + rRNA_region_793 LSU-rRNA_Hsa +chr8 31598114 31598204 - rRNA_region_794 5S +chr8 32153576 32153619 + rRNA_region_795 5S +chr8 32192077 32192148 - rRNA_region_796 5S +chr8 32256495 32256608 + rRNA_region_797 5S +chr8 33013359 33013533 + rRNA_region_798 LSU-rRNA_Hsa +chr8 36764444 36764518 + rRNA_region_799 5S +chr8 39256135 39256175 + rRNA_region_800 5S +chr8 43124466 43124516 - rRNA_region_801 5S +chr8 43204699 43204813 + rRNA_region_802 5S +chr8 46039948 46040475 - rRNA_region_803 LSU-rRNA_Hsa +chr8 46040473 46040560 - rRNA_region_804 LSU-rRNA_Hsa +chr8 48463396 48463473 - rRNA_region_805 LSU-rRNA_Hsa +chr8 49167891 49167939 - rRNA_region_806 5S +chr8 51546305 51546393 + rRNA_region_807 5S +chr8 52090655 52090697 - rRNA_region_808 5S +chr8 55745229 55745317 + rRNA_region_809 5S +chr8 55842473 55842782 - rRNA_region_810 LSU-rRNA_Hsa +chr8 55909094 55909477 - rRNA_region_811 LSU-rRNA_Hsa +chr8 56289328 56289369 - rRNA_region_812 5S +chr8 57126672 57126759 - rRNA_region_813 5S +chr8 59455884 59455974 + rRNA_region_814 5S +chr8 60243602 60243644 + rRNA_region_815 5S +chr8 62138991 62139043 - rRNA_region_816 5S +chr8 62454924 62455140 + rRNA_region_817 LSU-rRNA_Hsa +chr8 65598124 65598166 - rRNA_region_818 5S +chr8 67099302 67099392 + rRNA_region_819 5S +chr8 68306205 68306561 - rRNA_region_820 LSU-rRNA_Hsa +chr8 68306559 68306687 + rRNA_region_821 LSU-rRNA_Hsa +chr8 68695656 68695732 + rRNA_region_822 5S +chr8 69690013 69690385 - rRNA_region_823 LSU-rRNA_Hsa +chr8 69929904 69930024 + rRNA_region_824 5S +chr8 70916474 70916520 + rRNA_region_825 5S +chr8 71074184 71074225 - rRNA_region_826 5S +chr8 72357732 72357805 + rRNA_region_827 5S +chr8 75993890 75993941 - rRNA_region_828 5S +chr8 76368125 76368233 - rRNA_region_829 LSU-rRNA_Hsa +chr8 76907462 76907516 + rRNA_region_830 5S +chr8 83761547 83761589 + rRNA_region_831 5S +chr8 86116643 86116689 - rRNA_region_832 5S +chr8 88396461 88396547 - rRNA_region_833 5S +chr8 90511135 90511241 + rRNA_region_834 5S +chr8 92167460 92167550 - rRNA_region_835 5S +chr8 93441276 93441366 + rRNA_region_836 5S +chr8 93697385 93697460 + rRNA_region_837 5S +chr8 96845735 96845777 - rRNA_region_838 5S +chr8 97565505 97565710 + rRNA_region_839 LSU-rRNA_Hsa +chr8 99974107 99974166 + rRNA_region_840 5S +chr8 101537951 101538094 - rRNA_region_841 LSU-rRNA_Hsa +chr8 102479261 102479308 - rRNA_region_842 LSU-rRNA_Hsa +chr8 102521183 102521234 - rRNA_region_843 5S +chr8 105194652 105194693 - rRNA_region_844 5S +chr8 107884493 107884612 + rRNA_region_845 5S +chr8 108292362 108292433 - rRNA_region_846 LSU-rRNA_Hsa +chr8 108524612 108524692 - rRNA_region_847 5S +chr8 110978451 110978491 - rRNA_region_848 5S +chr8 112334110 112334150 - rRNA_region_849 5S +chr8 113013454 113013498 - rRNA_region_850 5S +chr8 116022702 116022789 - rRNA_region_851 5S +chr8 116940059 116940097 - rRNA_region_852 5S +chr8 119891159 119891229 - rRNA_region_853 5S +chr8 120373888 120373930 - rRNA_region_854 5S +chr8 121174903 121174945 - rRNA_region_855 5S +chr8 122945833 122945875 + rRNA_region_856 5S +chr8 123220459 123220510 + rRNA_region_857 5S +chr8 132754273 132754315 + rRNA_region_858 5S +chr8 137459955 137460031 + rRNA_region_859 5S +chr8 138803379 138803450 - rRNA_region_860 5S +chr8 139678155 139678267 - rRNA_region_861 LSU-rRNA_Hsa +chr8 140940561 140940664 + rRNA_region_862 5S +chr9 401793 401835 + rRNA_region_863 5S +chr9 1212195 1212358 - rRNA_region_864 SSU-rRNA_Hsa +chr9 1333833 1333923 + rRNA_region_865 5S +chr9 4691651 4691745 - rRNA_region_866 LSU-rRNA_Hsa +chr9 4799734 4800000 - rRNA_region_867 SSU-rRNA_Hsa +chr9 7071820 7071862 + rRNA_region_868 5S +chr9 7622268 7622335 + rRNA_region_869 LSU-rRNA_Hsa +chr9 8740132 8740176 + rRNA_region_870 5S +chr9 15220865 15220964 + rRNA_region_871 5S +chr9 17001119 17001243 - rRNA_region_872 LSU-rRNA_Hsa +chr9 19278554 19278595 + rRNA_region_873 LSU-rRNA_Hsa +chr9 19492827 19492990 - rRNA_region_874 LSU-rRNA_Hsa +chr9 22108405 22108441 - rRNA_region_875 5S +chr9 26081083 26081196 - rRNA_region_876 LSU-rRNA_Hsa +chr9 27198286 27198356 + rRNA_region_877 5S +chr9 28260564 28260628 + rRNA_region_878 LSU-rRNA_Hsa +chr9 29042225 29042267 + rRNA_region_879 5S +chr9 32537940 32538169 + rRNA_region_880 SSU-rRNA_Hsa +chr9 33219985 33220032 - rRNA_region_881 LSU-rRNA_Hsa +chr9 33658624 33658773 + rRNA_region_882 LSU-rRNA_Hsa +chr9 34206156 34206241 - rRNA_region_883 5S +chr9 37421883 37421966 - rRNA_region_884 5S +chr9 41237437 41237557 - rRNA_region_885 5S +chr9 62802317 62802438 - rRNA_region_886 5S +chr9 63813189 63813309 + rRNA_region_887 5S +chr9 69220268 69220310 - rRNA_region_888 5S +chr9 72299752 72299833 - rRNA_region_889 5S +chr9 73430305 73430346 - rRNA_region_890 5S +chr9 73750930 73750970 - rRNA_region_891 5S +chr9 73750970 73751058 - rRNA_region_892 5S +chr9 76571732 76572034 + rRNA_region_893 LSU-rRNA_Hsa +chr9 78888860 78888910 - rRNA_region_894 5S +chr9 81421720 81421806 + rRNA_region_895 SSU-rRNA_Hsa +chr9 81885496 81885575 + rRNA_region_896 5S +chr9 83083230 83083269 + rRNA_region_897 5S +chr9 84003501 84003540 + rRNA_region_898 5S +chr9 85467440 85467490 - rRNA_region_899 5S +chr9 87991541 87991582 + rRNA_region_900 5S +chr9 93600799 93600891 - rRNA_region_901 5S +chr9 95142446 95142541 - rRNA_region_902 5S +chr9 95905004 95905093 + rRNA_region_903 5S +chr9 99145876 99145965 - rRNA_region_904 5S +chr9 103290130 103290450 + rRNA_region_905 LSU-rRNA_Hsa +chr9 103689487 103689573 - rRNA_region_906 5S +chr9 104283594 104283669 + rRNA_region_907 LSU-rRNA_Hsa +chr9 104877433 104877486 - rRNA_region_908 5S +chr9 106843776 106843866 - rRNA_region_909 5S +chr9 107200782 107200861 + rRNA_region_910 5S +chr9 108636317 108636398 + rRNA_region_911 5S +chr9 110016217 110016259 + rRNA_region_912 5S +chr9 111411653 111411742 - rRNA_region_913 5S +chr9 112212360 112212402 - rRNA_region_914 5S +chr9 112252257 112252347 + rRNA_region_915 5S +chr9 121105132 121105213 + rRNA_region_916 5S +chr9 121490333 121490375 + rRNA_region_917 5S +chr9 124051458 124051534 - rRNA_region_918 LSU-rRNA_Hsa +chr9 127841149 127841217 - rRNA_region_919 5S +chr9 128668886 128668948 + rRNA_region_920 LSU-rRNA_Hsa +chr9 128686212 128686326 + rRNA_region_921 LSU-rRNA_Hsa +chr9 131189238 131189277 - rRNA_region_922 5S +chr9 134075051 134075113 + rRNA_region_923 5S +chr9 137792882 137793070 + rRNA_region_924 LSU-rRNA_Hsa +chrM 2589 2745 + rRNA_region_925 LSU-rRNA_Hsa +chrX 1300253 1300364 - rRNA_region_926 5S +chrX 9133828 9133948 + rRNA_region_927 5S +chrX 9403936 9404013 + rRNA_region_928 5S +chrX 9404183 9404288 + rRNA_region_929 5S +chrX 9406158 9406238 + rRNA_region_930 5S +chrX 9409883 9409989 + rRNA_region_931 5S +chrX 9410927 9411007 + rRNA_region_932 5S +chrX 9411859 9411975 + rRNA_region_933 5S +chrX 9412905 9412984 + rRNA_region_934 5S +chrX 9413949 9414029 + rRNA_region_935 5S +chrX 13241604 13241641 - rRNA_region_936 5S +chrX 13573877 13573935 + rRNA_region_937 LSU-rRNA_Hsa +chrX 13575638 13575838 + rRNA_region_938 LSU-rRNA_Hsa +chrX 16334242 16334286 + rRNA_region_939 SSU-rRNA_Hsa +chrX 16334683 16334780 + rRNA_region_940 SSU-rRNA_Hsa +chrX 17630237 17630279 + rRNA_region_941 5S +chrX 17823685 17823727 + rRNA_region_942 5S +chrX 23447716 23447767 + rRNA_region_943 5S +chrX 27708402 27708488 + rRNA_region_944 5S +chrX 28970736 28970809 + rRNA_region_945 5S +chrX 28982849 28982970 - rRNA_region_946 5S +chrX 30891068 30891224 + rRNA_region_947 LSU-rRNA_Hsa +chrX 32102064 32102154 + rRNA_region_948 5S +chrX 32593471 32593617 + rRNA_region_949 SSU-rRNA_Hsa +chrX 34215957 34216047 + rRNA_region_950 SSU-rRNA_Hsa +chrX 35512013 35512137 - rRNA_region_951 LSU-rRNA_Hsa +chrX 38053575 38053617 + rRNA_region_952 5S +chrX 41292797 41292887 + rRNA_region_953 5S +chrX 44705406 44705457 - rRNA_region_954 5S +chrX 47316112 47316178 - rRNA_region_955 LSU-rRNA_Hsa +chrX 47890039 47890403 - rRNA_region_956 LSU-rRNA_Hsa +chrX 48206257 48206348 + rRNA_region_957 5S +chrX 48223451 48223494 + rRNA_region_958 5S +chrX 48235352 48235452 - rRNA_region_959 5S +chrX 48562160 48562242 - rRNA_region_960 5S +chrX 48634873 48634915 + rRNA_region_961 5S +chrX 50802675 50802733 - rRNA_region_962 5S +chrX 52665230 52665321 + rRNA_region_963 5S +chrX 53746112 53746161 - rRNA_region_964 5S +chrX 53909053 53909163 + rRNA_region_965 5S +chrX 54377187 54377257 + rRNA_region_966 LSU-rRNA_Hsa +chrX 55261606 55261647 - rRNA_region_967 5S +chrX 57762627 57762677 - rRNA_region_968 5S +chrX 64141069 64141111 + rRNA_region_969 5S +chrX 69672478 69672599 + rRNA_region_970 5S +chrX 70253042 70253130 + rRNA_region_971 5S +chrX 71434964 71435005 + rRNA_region_972 5S +chrX 74356171 74356209 - rRNA_region_973 5S +chrX 76655037 76655127 - rRNA_region_974 5S +chrX 77066708 77066829 + rRNA_region_975 5S +chrX 77699457 77699512 + rRNA_region_976 LSU-rRNA_Hsa +chrX 77837199 77837237 + rRNA_region_977 5S +chrX 81394408 81394450 - rRNA_region_978 5S +chrX 85310073 85310150 - rRNA_region_979 5S +chrX 88828252 88828340 + rRNA_region_980 LSU-rRNA_Hsa +chrX 89480758 89480819 + rRNA_region_981 LSU-rRNA_Hsa +chrX 89480819 89480907 + rRNA_region_982 LSU-rRNA_Hsa +chrX 89480901 89480944 + rRNA_region_983 LSU-rRNA_Hsa +chrX 95582063 95582153 + rRNA_region_984 5S +chrX 97148596 97148674 + rRNA_region_985 5S +chrX 97517867 97518066 + rRNA_region_986 LSU-rRNA_Hsa +chrX 97518063 97518263 + rRNA_region_987 LSU-rRNA_Hsa +chrX 98898088 98898125 - rRNA_region_988 5S +chrX 102303257 102303296 + rRNA_region_989 5S +chrX 102383818 102383857 - rRNA_region_990 5S +chrX 103128418 103128453 + rRNA_region_991 5S +chrX 103850822 103850912 - rRNA_region_992 5S +chrX 105940147 105940188 - rRNA_region_993 5S +chrX 107592319 107592358 + rRNA_region_994 5S +chrX 107719320 107719362 + rRNA_region_995 5S +chrX 109054118 109054600 + rRNA_region_996 LSU-rRNA_Hsa +chrX 111669827 111669948 - rRNA_region_997 5S +chrX 114134293 114134343 - rRNA_region_998 5S +chrX 116389961 116390106 + rRNA_region_999 LSU-rRNA_Hsa +chrX 117000881 117000922 - rRNA_region_1000 5S +chrX 118199948 118200227 - rRNA_region_1001 SSU-rRNA_Hsa +chrX 123254190 123254233 + rRNA_region_1002 5S +chrX 124063481 124063524 - rRNA_region_1003 5S +chrX 124551192 124551231 - rRNA_region_1004 5S +chrX 129436530 129436647 - rRNA_region_1005 5S +chrX 129599754 129599796 - rRNA_region_1006 5S +chrX 129762302 129762344 - rRNA_region_1007 5S +chrX 131938866 131938955 - rRNA_region_1008 5S +chrX 134526280 134526420 - rRNA_region_1009 LSU-rRNA_Hsa +chrX 134974806 134974861 - rRNA_region_1010 LSU-rRNA_Hsa +chrX 135428165 135428284 - rRNA_region_1011 5S +chrX 140776227 140776442 + rRNA_region_1012 LSU-rRNA_Hsa +chrX 142411052 142411173 + rRNA_region_1013 5S +chrX 146427482 146427572 - rRNA_region_1014 5S +chrX 148008098 148008214 - rRNA_region_1015 5S +chrX 151026316 151026404 - rRNA_region_1016 5S +chrY 1300253 1300364 - rRNA_region_1017 5S +chrY 3136948 3137009 + rRNA_region_1018 LSU-rRNA_Hsa +chrY 3137009 3137100 + rRNA_region_1019 LSU-rRNA_Hsa +chrY 3137091 3137134 + rRNA_region_1020 LSU-rRNA_Hsa +chrY 10090407 10090527 - rRNA_region_1021 5S +chrY 10092872 10092993 - rRNA_region_1022 5S +chrY 10197255 10199103 + rRNA_region_1023 SSU-rRNA_Hsa +chrY 17557863 17557978 + rRNA_region_1024 5S +chrY 17559773 17559891 + rRNA_region_1025 5S +chrY 17580033 17580559 - rRNA_region_1026 LSU-rRNA_Hsa +chrY 17580557 17580644 - rRNA_region_1027 LSU-rRNA_Hsa +chrY 18325362 18325449 + rRNA_region_1028 LSU-rRNA_Hsa +chrY 18325447 18325973 + rRNA_region_1029 LSU-rRNA_Hsa +chrY 18346120 18346238 - rRNA_region_1030 5S +chrY 18348032 18348147 - rRNA_region_1031 5S +chrY 20520870 20520918 + rRNA_region_1032 5S +chr10 154853 154940 - rRNA_region_1033 5S +chr10 282035 282125 - rRNA_region_1034 5S +chr10 4134522 4134564 - rRNA_region_1035 5S +chr10 5299783 5299910 - rRNA_region_1036 LSU-rRNA_Hsa +chr10 5900317 5900359 - rRNA_region_1037 5S +chr10 8656715 8656831 - rRNA_region_1038 5S +chr10 9164326 9164407 + rRNA_region_1039 LSU-rRNA_Hsa +chr10 10323983 10324024 - rRNA_region_1040 5S +chr10 10324039 10324080 - rRNA_region_1041 5S +chr10 12924697 12924784 - rRNA_region_1042 5S +chr10 13727795 13727885 + rRNA_region_1043 5S +chr10 14663404 14663494 - rRNA_region_1044 5S +chr10 18618968 18619019 + rRNA_region_1045 5S +chr10 19633681 19633803 - rRNA_region_1046 5S +chr10 21165596 21165635 + rRNA_region_1047 5S +chr10 21858569 21858627 - rRNA_region_1048 5S +chr10 22997280 22997351 + rRNA_region_1049 5S +chr10 23868090 23868138 + rRNA_region_1050 5S +chr10 24640165 24640286 + rRNA_region_1051 5S +chr10 25813808 25813917 - rRNA_region_1052 5S +chr10 26509593 26509686 + rRNA_region_1053 5S +chr10 28874391 28874490 - rRNA_region_1054 5S +chr10 30814884 30814926 - rRNA_region_1055 5S +chr10 31259598 31259688 + rRNA_region_1056 5S +chr10 31539396 31539445 + rRNA_region_1057 5S +chr10 31833072 31833125 - rRNA_region_1058 LSU-rRNA_Hsa +chr10 32410318 32410698 - rRNA_region_1059 LSU-rRNA_Hsa +chr10 35081948 35082013 - rRNA_region_1060 LSU-rRNA_Hsa +chr10 37834967 37835020 + rRNA_region_1061 LSU-rRNA_Hsa +chr10 45856319 45856422 + rRNA_region_1062 5S +chr10 46807457 46807572 - rRNA_region_1063 5S +chr10 47532352 47532467 + rRNA_region_1064 5S +chr10 48040462 48040577 + rRNA_region_1065 5S +chr10 49702990 49703373 - rRNA_region_1066 LSU-rRNA_Hsa +chr10 49979664 49979779 - rRNA_region_1067 5S +chr10 53458187 53458275 + rRNA_region_1068 5S +chr10 53883462 53883591 - rRNA_region_1069 LSU-rRNA_Hsa +chr10 53894357 53894402 - rRNA_region_1070 5S +chr10 54175231 54175273 + rRNA_region_1071 5S +chr10 55599856 55600004 + rRNA_region_1072 LSU-rRNA_Hsa +chr10 59688077 59688370 - rRNA_region_1073 LSU-rRNA_Hsa +chr10 59919396 59919475 + rRNA_region_1074 5S +chr10 60517423 60517464 + rRNA_region_1075 5S +chr10 64812445 64812487 - rRNA_region_1076 5S +chr10 67045452 67045710 - rRNA_region_1077 LSU-rRNA_Hsa +chr10 68461406 68461526 + rRNA_region_1078 5S +chr10 69010398 69010533 - rRNA_region_1079 LSU-rRNA_Hsa +chr10 73706496 73706615 + rRNA_region_1080 5S +chr10 74227074 74227140 + rRNA_region_1081 LSU-rRNA_Hsa +chr10 77587049 77587138 + rRNA_region_1082 5S +chr10 77969913 77969998 - rRNA_region_1083 LSU-rRNA_Hsa +chr10 86052447 86052568 + rRNA_region_1084 5S +chr10 90178944 90178985 + rRNA_region_1085 5S +chr10 90213476 90213518 + rRNA_region_1086 5S +chr10 90686141 90686183 - rRNA_region_1087 5S +chr10 93303189 93303274 + rRNA_region_1088 5S +chr10 93510590 93510680 - rRNA_region_1089 5S +chr10 94192862 94192912 + rRNA_region_1090 5S +chr10 96619375 96619475 + rRNA_region_1091 5S +chr10 99439054 99439121 + rRNA_region_1092 LSU-rRNA_Hsa +chr10 104646766 104646851 + rRNA_region_1093 LSU-rRNA_Hsa +chr10 106970021 106970110 + rRNA_region_1094 5S +chr10 107345756 107345791 + rRNA_region_1095 5S +chr10 107461560 107461649 + rRNA_region_1096 5S +chr10 110761141 110761231 + rRNA_region_1097 5S +chr10 113703655 113703819 - rRNA_region_1098 LSU-rRNA_Hsa +chr10 118290701 118290742 - rRNA_region_1099 5S +chr10 120529693 120529758 + rRNA_region_1100 LSU-rRNA_Hsa +chr10 121816793 121816835 + rRNA_region_1101 5S +chr10 122957583 122957625 + rRNA_region_1102 5S +chr10 125622611 125622666 - rRNA_region_1103 5S +chr10 126145492 126145582 - rRNA_region_1104 5S +chr10 126574813 126574882 + rRNA_region_1105 5S +chr11 6016995 6017112 + rRNA_region_1106 5S +chr11 8717576 8717619 - rRNA_region_1107 5S +chr11 9209231 9209274 + rRNA_region_1108 5S +chr11 10902879 10902921 - rRNA_region_1109 5S +chr11 13263923 13264095 + rRNA_region_1110 SSU-rRNA_Hsa +chr11 13618103 13618190 + rRNA_region_1111 5S +chr11 13907500 13907589 - rRNA_region_1112 5S +chr11 14134985 14135080 + rRNA_region_1113 5S +chr11 18248386 18248503 - rRNA_region_1114 5S +chr11 18266395 18266512 + rRNA_region_1115 5S +chr11 18749160 18749279 - rRNA_region_1116 LSU-rRNA_Hsa +chr11 19401891 19401981 - rRNA_region_1117 5S +chr11 21000839 21000880 - rRNA_region_1118 5S +chr11 21000880 21000965 - rRNA_region_1119 5S +chr11 21297229 21297269 - rRNA_region_1120 5S +chr11 21383804 21383909 - rRNA_region_1121 5S +chr11 22480687 22480980 + rRNA_region_1122 LSU-rRNA_Hsa +chr11 22688350 22688440 + rRNA_region_1123 5S +chr11 27107731 27107809 - rRNA_region_1124 5S +chr11 27521636 27521725 - rRNA_region_1125 5S +chr11 29031711 29031750 + rRNA_region_1126 5S +chr11 31599888 31599938 - rRNA_region_1127 5S +chr11 32164185 32164226 + rRNA_region_1128 5S +chr11 33264375 33264435 - rRNA_region_1129 5S +chr11 38763632 38763673 + rRNA_region_1130 5S +chr11 40261218 40261249 + rRNA_region_1131 LSU-rRNA_Hsa +chr11 47804291 47804401 - rRNA_region_1132 5S +chr11 48477871 48477946 + rRNA_region_1133 5S +chr11 49426159 49426209 - rRNA_region_1134 5S +chr11 49935747 49935823 - rRNA_region_1135 5S +chr11 54648777 54648852 + rRNA_region_1136 5S +chr11 57450182 57450269 + rRNA_region_1137 5S +chr11 57819652 57819696 - rRNA_region_1138 5S +chr11 64506488 64506542 - rRNA_region_1139 5S +chr11 68231575 68231970 - rRNA_region_1140 LSU-rRNA_Hsa +chr11 68804128 68804217 + rRNA_region_1141 5S +chr11 71845208 71845259 - rRNA_region_1142 5S +chr11 73202391 73202471 + rRNA_region_1143 5S +chr11 73792053 73792162 + rRNA_region_1144 LSU-rRNA_Hsa +chr11 74198764 74198854 - rRNA_region_1145 5S +chr11 75934932 75935020 + rRNA_region_1146 5S +chr11 76147486 76147640 + rRNA_region_1147 LSU-rRNA_Hsa +chr11 77886427 77886755 + rRNA_region_1148 LSU-rRNA_Hsa +chr11 83104910 83104993 + rRNA_region_1149 LSU-rRNA_Hsa +chr11 85081561 85081752 - rRNA_region_1150 SSU-rRNA_Hsa +chr11 85081736 85081802 - rRNA_region_1151 SSU-rRNA_Hsa +chr11 85483967 85484263 + rRNA_region_1152 LSU-rRNA_Hsa +chr11 86044279 86044577 - rRNA_region_1153 LSU-rRNA_Hsa +chr11 86535320 86535470 + rRNA_region_1154 SSU-rRNA_Hsa +chr11 88131569 88131646 + rRNA_region_1155 5S +chr11 89274348 89274398 + rRNA_region_1156 5S +chr11 94720066 94720199 + rRNA_region_1157 LSU-rRNA_Hsa +chr11 95524045 95524134 - rRNA_region_1158 5S +chr11 95840036 95840123 - rRNA_region_1159 5S +chr11 97657463 97657584 + rRNA_region_1160 5S +chr11 99349155 99349197 + rRNA_region_1161 5S +chr11 102057853 102057915 + rRNA_region_1162 5S +chr11 102057917 102057997 + rRNA_region_1163 5S +chr11 102399565 102399620 + rRNA_region_1164 5S +chr11 103408915 103409080 - rRNA_region_1165 LSU-rRNA_Hsa +chr11 104252582 104252649 + rRNA_region_1166 5S +chr11 105394960 105395002 + rRNA_region_1167 5S +chr11 106330976 106331018 - rRNA_region_1168 5S +chr11 109120875 109120986 - rRNA_region_1169 5S +chr11 110151418 110151460 - rRNA_region_1170 5S +chr11 111040119 111040208 - rRNA_region_1171 5S +chr11 111821183 111821353 - rRNA_region_1172 LSU-rRNA_Hsa +chr11 111821391 111821638 - rRNA_region_1173 LSU-rRNA_Hsa +chr11 111821932 111822024 - rRNA_region_1174 LSU-rRNA_Hsa +chr11 111928403 111928478 + rRNA_region_1175 5S +chr11 113427174 113427217 + rRNA_region_1176 5S +chr11 124636458 124636548 + rRNA_region_1177 5S +chr11 125153300 125153341 - rRNA_region_1178 5S +chr11 128734273 128734354 + rRNA_region_1179 5S +chr11 129289903 129289988 + rRNA_region_1180 5S +chr11 129408949 129409030 + rRNA_region_1181 LSU-rRNA_Hsa +chr12 51205 51286 - rRNA_region_1182 5S +chr12 9951833 9951879 + rRNA_region_1183 5S +chr12 11561870 11561912 + rRNA_region_1184 5S +chr12 12337965 12338006 - rRNA_region_1185 5S +chr12 13046151 13046241 + rRNA_region_1186 5S +chr12 13287732 13287779 - rRNA_region_1187 5S +chr12 13440909 13441001 - rRNA_region_1188 5S +chr12 17066783 17066861 - rRNA_region_1189 5S +chr12 17067223 17067240 - rRNA_region_1190 5S +chr12 18358244 18358382 - rRNA_region_1191 LSU-rRNA_Hsa +chr12 18358393 18358457 - rRNA_region_1192 LSU-rRNA_Hsa +chr12 19773210 19773369 + rRNA_region_1193 LSU-rRNA_Hsa +chr12 20551423 20551588 + rRNA_region_1194 SSU-rRNA_Hsa +chr12 26373650 26373733 - rRNA_region_1195 5S +chr12 27807782 27807821 - rRNA_region_1196 5S +chr12 28505393 28505483 + rRNA_region_1197 5S +chr12 30306434 30306525 - rRNA_region_1198 5S +chr12 30504099 30504140 + rRNA_region_1199 5S +chr12 30693875 30693949 + rRNA_region_1200 5S +chr12 30734758 30734818 - rRNA_region_1201 SSU-rRNA_Hsa +chr12 31434400 31434441 - rRNA_region_1202 5S +chr12 32511838 32511888 + rRNA_region_1203 5S +chr12 34203868 34203921 + rRNA_region_1204 5S +chr12 34205698 34205819 + rRNA_region_1205 5S +chr12 34219380 34219670 - rRNA_region_1206 LSU-rRNA_Hsa +chr12 34219672 34219806 - rRNA_region_1207 LSU-rRNA_Hsa +chr12 34219804 34219890 - rRNA_region_1208 LSU-rRNA_Hsa +chr12 38137574 38137661 + rRNA_region_1209 LSU-rRNA_Hsa +chr12 38137655 38138128 + rRNA_region_1210 LSU-rRNA_Hsa +chr12 38161463 38161582 - rRNA_region_1211 5S +chr12 38163400 38163515 - rRNA_region_1212 5S +chr12 39639338 39639405 + rRNA_region_1213 5S +chr12 41658679 41658765 + rRNA_region_1214 5S +chr12 43689167 43689222 + rRNA_region_1215 5S +chr12 45023618 45023668 + rRNA_region_1216 5S +chr12 45117771 45117889 + rRNA_region_1217 5S +chr12 46240981 46241023 + rRNA_region_1218 5S +chr12 48194457 48194525 + rRNA_region_1219 LSU-rRNA_Hsa +chr12 48677989 48678052 + rRNA_region_1220 5S +chr12 50243442 50243492 + rRNA_region_1221 5S +chr12 52185982 52186031 + rRNA_region_1222 5S +chr12 56870568 56870681 + rRNA_region_1223 LSU-rRNA_Hsa +chr12 56870726 56870768 + rRNA_region_1224 5S +chr12 60484263 60484299 - rRNA_region_1225 LSU-rRNA_Hsa +chr12 62394030 62394071 + rRNA_region_1226 5S +chr12 67372866 67373001 - rRNA_region_1227 LSU-rRNA_Hsa +chr12 68077585 68077670 + rRNA_region_1228 5S +chr12 68929058 68929130 + rRNA_region_1229 LSU-rRNA_Hsa +chr12 69669255 69669319 - rRNA_region_1230 LSU-rRNA_Hsa +chr12 71543121 71543163 - rRNA_region_1231 5S +chr12 71735692 71735745 - rRNA_region_1232 5S +chr12 71835173 71835215 - rRNA_region_1233 5S +chr12 74953560 74953670 - rRNA_region_1234 LSU-rRNA_Hsa +chr12 74953695 74953832 - rRNA_region_1235 LSU-rRNA_Hsa +chr12 75498064 75498304 + rRNA_region_1236 LSU-rRNA_Hsa +chr12 79878312 79878415 - rRNA_region_1237 5S +chr12 83064642 83064700 - rRNA_region_1238 5S +chr12 85168918 85168982 - rRNA_region_1239 LSU-rRNA_Hsa +chr12 86187202 86187243 + rRNA_region_1240 5S +chr12 88051693 88051784 + rRNA_region_1241 5S +chr12 88388550 88388589 - rRNA_region_1242 5S +chr12 89726933 89727018 + rRNA_region_1243 5S +chr12 90288921 90288963 - rRNA_region_1244 5S +chr12 91906909 91906951 + rRNA_region_1245 5S +chr12 94054962 94055127 + rRNA_region_1246 LSU-rRNA_Hsa +chr12 94056424 94056509 + rRNA_region_1247 LSU-rRNA_Hsa +chr12 94330467 94330553 + rRNA_region_1248 SSU-rRNA_Hsa +chr12 94443405 94443482 - rRNA_region_1249 LSU-rRNA_Hsa +chr12 97440227 97440275 - rRNA_region_1250 5S +chr12 98633946 98633988 - rRNA_region_1251 5S +chr12 99083815 99083904 - rRNA_region_1252 5S +chr12 101472339 101472446 + rRNA_region_1253 5S +chr12 101779813 101779904 + rRNA_region_1254 5S +chr12 101836817 101836908 + rRNA_region_1255 5S +chr12 101885317 101885446 - rRNA_region_1256 LSU-rRNA_Hsa +chr12 103926071 103926181 - rRNA_region_1257 SSU-rRNA_Hsa +chr12 104125235 104125325 + rRNA_region_1258 5S +chr12 105732660 105732702 - rRNA_region_1259 5S +chr12 107271319 107271394 - rRNA_region_1260 5S +chr12 107486545 107486635 - rRNA_region_1261 5S +chr12 109059985 109060073 + rRNA_region_1262 5S +chr12 109620234 109620331 - rRNA_region_1263 5S +chr12 111339526 111339611 + rRNA_region_1264 5S +chr12 111730325 111730385 + rRNA_region_1265 5S +chr12 112728563 112728628 - rRNA_region_1266 LSU-rRNA_Hsa +chr12 114205060 114205102 - rRNA_region_1267 5S +chr12 118135833 118135890 - rRNA_region_1268 LSU-rRNA_Hsa +chr12 118829680 118829770 + rRNA_region_1269 5S +chr12 123282915 123283033 - rRNA_region_1270 5S +chr12 127165907 127166171 - rRNA_region_1271 LSU-rRNA_Hsa +chr12 127166337 127166442 - rRNA_region_1272 LSU-rRNA_Hsa +chr12 131299660 131299751 - rRNA_region_1273 5S +chr12 131661062 131661153 + rRNA_region_1274 5S +chr12 131801313 131801426 - rRNA_region_1275 5S +chr12 132723943 132724056 - rRNA_region_1276 5S +chr12 133047540 133047625 - rRNA_region_1277 5S +chr13 19088483 19088575 + rRNA_region_1278 5S +chr13 21346015 21346057 + rRNA_region_1279 5S +chr13 21369810 21369897 - rRNA_region_1280 5S +chr13 21466889 21466930 + rRNA_region_1281 5S +chr13 27535564 27535606 + rRNA_region_1282 5S +chr13 28144612 28144651 - rRNA_region_1283 5S +chr13 31800624 31800662 + rRNA_region_1284 5S +chr13 34803974 34804023 - rRNA_region_1285 SSU-rRNA_Hsa +chr13 36798292 36798374 - rRNA_region_1286 5S +chr13 36864381 36864456 - rRNA_region_1287 5S +chr13 37854880 37854970 - rRNA_region_1288 5S +chr13 42835667 42835709 + rRNA_region_1289 5S +chr13 45551481 45551602 - rRNA_region_1290 5S +chr13 48764891 48764980 + rRNA_region_1291 5S +chr13 50812986 50813106 - rRNA_region_1292 5S +chr13 51027764 51027851 - rRNA_region_1293 5S +chr13 53791204 53791320 - rRNA_region_1294 5S +chr13 54022324 54022390 - rRNA_region_1295 LSU-rRNA_Hsa +chr13 57991349 57991439 + rRNA_region_1296 5S +chr13 60613607 60613697 + rRNA_region_1297 5S +chr13 62768908 62768986 + rRNA_region_1298 5S +chr13 67634480 67634569 + rRNA_region_1299 LSU-rRNA_Hsa +chr13 68391738 68391829 + rRNA_region_1300 LSU-rRNA_Hsa +chr13 70024081 70024130 - rRNA_region_1301 5S +chr13 71978093 71978208 + rRNA_region_1302 5S +chr13 75563962 75564052 - rRNA_region_1303 5S +chr13 79389541 79389630 - rRNA_region_1304 5S +chr13 80080956 80080998 - rRNA_region_1305 5S +chr13 84683567 84683678 + rRNA_region_1306 LSU-rRNA_Hsa +chr13 85894028 85894068 - rRNA_region_1307 5S +chr13 90135745 90135840 - rRNA_region_1308 5S +chr13 92304969 92305009 - rRNA_region_1309 5S +chr13 93970012 93970054 + rRNA_region_1310 5S +chr13 94025508 94025598 - rRNA_region_1311 5S +chr13 94634246 94634339 - rRNA_region_1312 LSU-rRNA_Hsa +chr13 94651396 94651511 - rRNA_region_1313 5S +chr13 96080237 96080327 - rRNA_region_1314 5S +chr13 97363011 97363101 - rRNA_region_1315 5S +chr13 97707808 97707850 + rRNA_region_1316 5S +chr13 101658760 101658871 + rRNA_region_1317 LSU-rRNA_Hsa +chr13 102408586 102408628 + rRNA_region_1318 5S +chr13 104197767 104197850 - rRNA_region_1319 LSU-rRNA_Hsa +chr13 104546917 104546961 + rRNA_region_1320 5S +chr13 105039234 105039277 + rRNA_region_1321 5S +chr13 106155400 106155490 - rRNA_region_1322 5S +chr13 108301239 108301327 - rRNA_region_1323 5S +chr13 112944335 112944555 - rRNA_region_1324 SSU-rRNA_Hsa +chr14 16054577 16056431 + rRNA_region_1325 SSU-rRNA_Hsa +chr14 20090129 20090209 + rRNA_region_1326 5S +chr14 20146063 20146155 - rRNA_region_1327 5S +chr14 20414986 20415076 + rRNA_region_1328 5S +chr14 21601779 21601868 - rRNA_region_1329 5S +chr14 21729973 21730039 - rRNA_region_1330 LSU-rRNA_Hsa +chr14 23517748 23517886 - rRNA_region_1331 LSU-rRNA_Hsa +chr14 24158602 24158724 + rRNA_region_1332 5S +chr14 33081143 33081186 - rRNA_region_1333 5S +chr14 43253792 43253842 + rRNA_region_1334 LSU-rRNA_Hsa +chr14 45017218 45017344 + rRNA_region_1335 LSU-rRNA_Hsa +chr14 49011209 49011275 + rRNA_region_1336 LSU-rRNA_Hsa +chr14 49087712 49087754 + rRNA_region_1337 5S +chr14 49552632 49552719 + rRNA_region_1338 5S +chr14 51692751 51692842 + rRNA_region_1339 5S +chr14 54720718 54720781 - rRNA_region_1340 LSU-rRNA_Hsa +chr14 54956656 54956711 + rRNA_region_1341 LSU-rRNA_Hsa +chr14 56212555 56212695 - rRNA_region_1342 LSU-rRNA_Hsa +chr14 60622318 60622431 - rRNA_region_1343 LSU-rRNA_Hsa +chr14 67260226 67260314 + rRNA_region_1344 5S +chr14 67657102 67657209 - rRNA_region_1345 5S +chr14 70067383 70067473 - rRNA_region_1346 5S +chr14 72217940 72218038 + rRNA_region_1347 LSU-rRNA_Hsa +chr14 73001459 73001501 + rRNA_region_1348 5S +chr14 75352884 75352924 - rRNA_region_1349 5S +chr14 75604172 75604262 + rRNA_region_1350 5S +chr14 76063216 76063258 + rRNA_region_1351 5S +chr14 77403904 77403993 - rRNA_region_1352 5S +chr14 78177832 78177921 - rRNA_region_1353 5S +chr14 80581238 80581257 + rRNA_region_1354 5S +chr14 88130285 88130506 + rRNA_region_1355 LSU-rRNA_Hsa +chr14 88130556 88130829 + rRNA_region_1356 LSU-rRNA_Hsa +chr14 89522233 89522277 - rRNA_region_1357 5S +chr14 89875026 89875229 - rRNA_region_1358 SSU-rRNA_Hsa +chr14 90351037 90351100 + rRNA_region_1359 5S +chr14 91270689 91270730 + rRNA_region_1360 SSU-rRNA_Hsa +chr14 91803888 91803972 - rRNA_region_1361 5S +chr14 92164493 92164535 - rRNA_region_1362 5S +chr14 96828557 96828599 + rRNA_region_1363 5S +chr14 99582442 99582484 + rRNA_region_1364 5S +chr14 103316946 103317036 - rRNA_region_1365 5S +chr14 105123743 105123785 - rRNA_region_1366 5S +chr14 106636671 106636761 + rRNA_region_1367 5S +chr15 20261165 20261206 + rRNA_region_1368 5S +chr15 23597280 23597331 - rRNA_region_1369 5S +chr15 25738508 25738588 + rRNA_region_1370 5S +chr15 27280316 27280435 - rRNA_region_1371 5S +chr15 27752093 27752398 + rRNA_region_1372 LSU-rRNA_Hsa +chr15 34047874 34047918 - rRNA_region_1373 LSU-rRNA_Hsa +chr15 35468364 35468453 + rRNA_region_1374 SSU-rRNA_Hsa +chr15 40331571 40331648 - rRNA_region_1375 5S +chr15 41851940 41852029 - rRNA_region_1376 5S +chr15 44715781 44715824 + rRNA_region_1377 5S +chr15 45553518 45553604 - rRNA_region_1378 5S +chr15 46074609 46074726 - rRNA_region_1379 LSU-rRNA_Hsa +chr15 46074869 46075119 - rRNA_region_1380 LSU-rRNA_Hsa +chr15 46075331 46075412 - rRNA_region_1381 LSU-rRNA_Hsa +chr15 46076006 46076140 - rRNA_region_1382 LSU-rRNA_Hsa +chr15 46076327 46076508 - rRNA_region_1383 LSU-rRNA_Hsa +chr15 49982442 49982562 + rRNA_region_1384 5S +chr15 50463380 50463458 + rRNA_region_1385 5S +chr15 55286107 55286196 + rRNA_region_1386 5S +chr15 55363555 55363645 + rRNA_region_1387 5S +chr15 55658122 55658164 - rRNA_region_1388 5S +chr15 56432697 56432770 - rRNA_region_1389 5S +chr15 57394665 57394744 - rRNA_region_1390 5S +chr15 58911445 58911553 + rRNA_region_1391 SSU-rRNA_Hsa +chr15 59324346 59324442 + rRNA_region_1392 LSU-rRNA_Hsa +chr15 59574101 59574222 - rRNA_region_1393 5S +chr15 60736769 60736858 + rRNA_region_1394 5S +chr15 61585346 61585386 - rRNA_region_1395 5S +chr15 62685354 62685395 + rRNA_region_1396 5S +chr15 63428497 63428536 + rRNA_region_1397 5S +chr15 64390913 64390955 - rRNA_region_1398 SSU-rRNA_Hsa +chr15 68666859 68666899 - rRNA_region_1399 5S +chr15 69367584 69367673 + rRNA_region_1400 5S +chr15 71858569 71858667 + rRNA_region_1401 5S +chr15 78399071 78399113 + rRNA_region_1402 5S +chr15 79497193 79497232 + rRNA_region_1403 5S +chr15 82590437 82590479 - rRNA_region_1404 5S +chr15 86138277 86138342 - rRNA_region_1405 5S +chr15 89762639 89762740 + rRNA_region_1406 5S +chr15 93420280 93420340 - rRNA_region_1407 5S +chr15 95808757 95808804 + rRNA_region_1408 5S +chr15 100074100 100074188 - rRNA_region_1409 5S +chr15 101271056 101271133 - rRNA_region_1410 LSU-rRNA_Hsa +chr16 9564408 9564497 - rRNA_region_1411 5S +chr16 9600088 9600184 + rRNA_region_1412 5S +chr16 11913815 11913854 + rRNA_region_1413 5S +chr16 13064383 13064419 - rRNA_region_1414 5S +chr16 14835386 14835416 - rRNA_region_1415 5S +chr16 15626449 15626524 + rRNA_region_1416 5S +chr16 16234202 16234232 - rRNA_region_1417 5S +chr16 17164338 17164388 - rRNA_region_1418 5S +chr16 18009728 18009770 - rRNA_region_1419 5S +chr16 18560465 18560495 + rRNA_region_1420 5S +chr16 19063158 19063198 + rRNA_region_1421 5S +chr16 21038498 21038540 - rRNA_region_1422 5S +chr16 23432352 23432498 + rRNA_region_1423 LSU-rRNA_Hsa +chr16 23749940 23750028 - rRNA_region_1424 SSU-rRNA_Hsa +chr16 24412873 24412944 + rRNA_region_1425 LSU-rRNA_Hsa +chr16 26028911 26029001 + rRNA_region_1426 5S +chr16 28162145 28162212 + rRNA_region_1427 LSU-rRNA_Hsa +chr16 29315804 29315849 + rRNA_region_1428 5S +chr16 29929955 29930140 - rRNA_region_1429 SSU-rRNA_Hsa +chr16 33589663 33589704 - rRNA_region_1430 5S +chr16 34160029 34161894 + rRNA_region_1431 SSU-rRNA_Hsa +chr16 35133799 35133838 + rRNA_region_1432 5S +chr16 35734146 35734250 + rRNA_region_1433 5S +chr16 35734406 35734503 + rRNA_region_1434 5S +chr16 35734647 35734750 + rRNA_region_1435 5S +chr16 35734908 35734984 + rRNA_region_1436 5S +chr16 35735133 35735237 + rRNA_region_1437 5S +chr16 35735379 35735483 + rRNA_region_1438 5S +chr16 35735630 35735735 + rRNA_region_1439 5S +chr16 35735891 35735986 + rRNA_region_1440 5S +chr16 35736158 35736231 + rRNA_region_1441 5S +chr16 35745769 35745847 + rRNA_region_1442 5S +chr16 35745995 35746099 + rRNA_region_1443 5S +chr16 35746293 35746371 + rRNA_region_1444 5S +chr16 35746543 35746646 + rRNA_region_1445 5S +chr16 35746821 35746896 + rRNA_region_1446 5S +chr16 35747038 35747142 + rRNA_region_1447 5S +chr16 35747339 35747404 + rRNA_region_1448 5S +chr16 35747563 35747641 + rRNA_region_1449 5S +chr16 35747779 35747883 + rRNA_region_1450 5S +chr16 35748059 35748139 + rRNA_region_1451 5S +chr16 35748320 35748395 + rRNA_region_1452 5S +chr16 35748579 35748657 + rRNA_region_1453 5S +chr16 35748803 35748907 + rRNA_region_1454 5S +chr16 35749054 35749158 + rRNA_region_1455 5S +chr16 35749315 35749409 + rRNA_region_1456 5S +chr16 35749560 35749663 + rRNA_region_1457 5S +chr16 35749812 35749915 + rRNA_region_1458 5S +chr16 35750067 35750170 + rRNA_region_1459 5S +chr16 35750348 35750421 + rRNA_region_1460 5S +chr16 35750596 35750674 + rRNA_region_1461 5S +chr16 35750844 35750924 + rRNA_region_1462 5S +chr16 35751098 35751173 + rRNA_region_1463 5S +chr16 35751366 35751436 + rRNA_region_1464 5S +chr16 35751604 35751686 + rRNA_region_1465 5S +chr16 35751860 35751937 + rRNA_region_1466 5S +chr16 35752085 35752188 + rRNA_region_1467 5S +chr16 35752358 35752438 + rRNA_region_1468 5S +chr16 35752608 35752686 + rRNA_region_1469 5S +chr16 35752857 35752937 + rRNA_region_1470 5S +chr16 35753577 35753680 + rRNA_region_1471 5S +chr16 35753828 35753932 + rRNA_region_1472 5S +chr16 35754081 35754184 + rRNA_region_1473 5S +chr16 35754332 35754436 + rRNA_region_1474 5S +chr16 35754615 35754690 + rRNA_region_1475 5S +chr16 35754959 35755031 + rRNA_region_1476 5S +chr16 35755201 35755287 + rRNA_region_1477 5S +chr16 47450365 47450461 - rRNA_region_1478 5S +chr16 47485561 47485607 + rRNA_region_1479 LSU-rRNA_Hsa +chr16 47504727 47505386 + rRNA_region_1480 LSU-rRNA_Hsa +chr16 47505431 47505519 + rRNA_region_1481 5S +chr16 48900447 48900489 - rRNA_region_1482 5S +chr16 50125879 50125941 - rRNA_region_1483 LSU-rRNA_Hsa +chr16 50869453 50869567 - rRNA_region_1484 5S +chr16 53337452 53337572 + rRNA_region_1485 5S +chr16 55724723 55724921 + rRNA_region_1486 LSU-rRNA_Hsa +chr16 55755904 55756062 + rRNA_region_1487 LSU-rRNA_Hsa +chr16 55837553 55837738 - rRNA_region_1488 LSU-rRNA_Hsa +chr16 55841455 55841743 + rRNA_region_1489 LSU-rRNA_Hsa +chr16 57805631 57805673 - rRNA_region_1490 5S +chr16 58167377 58167418 - rRNA_region_1491 5S +chr16 59494249 59494291 + rRNA_region_1492 5S +chr16 59731354 59731443 + rRNA_region_1493 5S +chr16 66301808 66301898 + rRNA_region_1494 5S +chr16 68742478 68742573 + rRNA_region_1495 5S +chr16 68937825 68937864 - rRNA_region_1496 5S +chr16 69502914 69502953 + rRNA_region_1497 5S +chr16 69503243 69503310 + rRNA_region_1498 5S +chr16 73704088 73704130 - rRNA_region_1499 5S +chr16 75861045 75861157 - rRNA_region_1500 5S +chr16 76744990 76745026 - rRNA_region_1501 5S +chr16 79264453 79264545 + rRNA_region_1502 5S +chr16 80354823 80354865 + rRNA_region_1503 5S +chr16 81868387 81868711 - rRNA_region_1504 LSU-rRNA_Hsa +chr16 84039945 84040036 - rRNA_region_1505 5S +chr16 84262836 84262928 - rRNA_region_1506 5S +chr16 88022308 88022353 + rRNA_region_1507 5S +chr17 2188944 2188986 + rRNA_region_1508 5S +chr17 4056804 4056874 - rRNA_region_1509 5S +chr17 6600961 6601051 - rRNA_region_1510 5S +chr17 6987464 6987558 + rRNA_region_1511 5S +chr17 9941838 9941880 + rRNA_region_1512 5S +chr17 10886298 10886383 - rRNA_region_1513 5S +chr17 15708036 15708077 + rRNA_region_1514 LSU-rRNA_Hsa +chr17 15782341 15782415 + rRNA_region_1515 5S +chr17 19452225 19452783 + rRNA_region_1516 LSU-rRNA_Hsa +chr17 19453359 19453434 + rRNA_region_1517 LSU-rRNA_Hsa +chr17 19453439 19453537 + rRNA_region_1518 LSU-rRNA_Hsa +chr17 19453623 19453784 + rRNA_region_1519 LSU-rRNA_Hsa +chr17 19600859 19600958 + rRNA_region_1520 LSU-rRNA_Hsa +chr17 19601262 19601345 + rRNA_region_1521 LSU-rRNA_Hsa +chr17 19997693 19997776 + rRNA_region_1522 5S +chr17 22524018 22524174 + rRNA_region_1523 LSU-rRNA_Hsa +chr17 30582239 30582322 + rRNA_region_1524 5S +chr17 31279310 31279352 + rRNA_region_1525 5S +chr17 31963853 31963933 - rRNA_region_1526 5S +chr17 32592094 32592219 - rRNA_region_1527 LSU-rRNA_Hsa +chr17 34120080 34120168 - rRNA_region_1528 5S +chr17 34493380 34493513 + rRNA_region_1529 LSU-rRNA_Hsa +chr17 35151095 35151256 - rRNA_region_1530 LSU-rRNA_Hsa +chr17 35151255 35151353 - rRNA_region_1531 LSU-rRNA_Hsa +chr17 36340137 36340186 - rRNA_region_1532 5S +chr17 36491231 36491322 - rRNA_region_1533 5S +chr17 37940741 37940790 - rRNA_region_1534 5S +chr17 38020281 38020330 - rRNA_region_1535 5S +chr17 38144238 38144287 - rRNA_region_1536 5S +chr17 38731799 38731920 - rRNA_region_1537 5S +chr17 40227389 40227456 + rRNA_region_1538 LSU-rRNA_Hsa +chr17 40374089 40374157 + rRNA_region_1539 5S +chr17 41718153 41718243 + rRNA_region_1540 5S +chr17 44596240 44596279 + rRNA_region_1541 LSU-rRNA_Hsa +chr17 45327407 45327497 - rRNA_region_1542 5S +chr17 45557654 45557696 - rRNA_region_1543 5S +chr17 45940281 45940323 + rRNA_region_1544 5S +chr17 46505352 46505394 + rRNA_region_1545 5S +chr17 49616071 49616113 + rRNA_region_1546 5S +chr17 52902105 52902145 + rRNA_region_1547 5S +chr17 54979584 54979626 + rRNA_region_1548 5S +chr17 57291841 57291883 + rRNA_region_1549 5S +chr17 57791257 57791391 - rRNA_region_1550 LSU-rRNA_Hsa +chr17 58726740 58726781 - rRNA_region_1551 5S +chr17 58930028 58930070 + rRNA_region_1552 5S +chr17 60002711 60002760 + rRNA_region_1553 5S +chr17 60040029 60040114 + rRNA_region_1554 LSU-rRNA_Hsa +chr17 60040323 60040368 + rRNA_region_1555 LSU-rRNA_Hsa +chr17 60040380 60040468 - rRNA_region_1556 LSU-rRNA_Hsa +chr17 60380215 60380264 + rRNA_region_1557 5S +chr17 62425170 62425262 - rRNA_region_1558 LSU-rRNA_Hsa +chr17 63629507 63629563 + rRNA_region_1559 LSU-rRNA_Hsa +chr17 64029487 64029524 + rRNA_region_1560 5S +chr17 64904565 64904607 - rRNA_region_1561 5S +chr17 66267742 66267831 + rRNA_region_1562 5S +chr17 66639268 66639347 + rRNA_region_1563 5S +chr17 66895492 66895570 + rRNA_region_1564 5S +chr17 67268109 67268229 + rRNA_region_1565 5S +chr17 71007013 71007081 - rRNA_region_1566 5S +chr17 73187524 73187574 - rRNA_region_1567 LSU-rRNA_Hsa +chr17 74417613 74417704 - rRNA_region_1568 5S +chr17 77161949 77162307 - rRNA_region_1569 LSU-rRNA_Hsa +chr18 9844759 9844829 - rRNA_region_1570 5S +chr18 9923918 9924002 + rRNA_region_1571 5S +chr18 13407510 13407555 + rRNA_region_1572 5S +chr18 21928987 21929094 - rRNA_region_1573 5S +chr18 22276833 22276898 - rRNA_region_1574 LSU-rRNA_Hsa +chr18 22292285 22292327 - rRNA_region_1575 5S +chr18 22643498 22643541 + rRNA_region_1576 5S +chr18 23611709 23611863 + rRNA_region_1577 LSU-rRNA_Hsa +chr18 24170502 24170623 - rRNA_region_1578 5S +chr18 24288919 24288992 + rRNA_region_1579 5S +chr18 32176047 32176167 - rRNA_region_1580 5S +chr18 38950286 38950394 - rRNA_region_1581 LSU-rRNA_Hsa +chr18 42270588 42270678 + rRNA_region_1582 5S +chr18 44071582 44071702 + rRNA_region_1583 5S +chr18 45936403 45936445 + rRNA_region_1584 LSU-rRNA_Hsa +chr18 48475512 48475600 - rRNA_region_1585 5S +chr18 48732948 48732991 - rRNA_region_1586 5S +chr18 49946300 49946388 - rRNA_region_1587 5S +chr18 49953065 49953103 - rRNA_region_1588 5S +chr18 50319003 50319096 + rRNA_region_1589 5S +chr18 50761587 50761762 - rRNA_region_1590 LSU-rRNA_Hsa +chr18 55146564 55146645 - rRNA_region_1591 5S +chr18 56793148 56793190 + rRNA_region_1592 5S +chr18 59712721 59712762 - rRNA_region_1593 5S +chr18 61048702 61048788 - rRNA_region_1594 LSU-rRNA_Hsa +chr18 65475512 65475600 + rRNA_region_1595 5S +chr18 65544923 65544965 - rRNA_region_1596 5S +chr18 69671963 69672005 + rRNA_region_1597 5S +chr18 72751995 72752050 + rRNA_region_1598 5S +chr18 74494831 74494874 + rRNA_region_1599 5S +chr18 74577164 74577423 - rRNA_region_1600 LSU-rRNA_Hsa +chr18 74577841 74577882 + rRNA_region_1601 5S +chr18 77863487 77863567 - rRNA_region_1602 5S +chr18 80012846 80013065 + rRNA_region_1603 LSU-rRNA_Hsa +chr19 453135 453224 + rRNA_region_1604 5S +chr19 7886975 7887095 - rRNA_region_1605 5S +chr19 10667731 10667885 + rRNA_region_1606 LSU-rRNA_Hsa +chr19 11996814 11996918 + rRNA_region_1607 5S +chr19 12027911 12028021 - rRNA_region_1608 5S +chr19 12070169 12070272 + rRNA_region_1609 5S +chr19 12106499 12106616 + rRNA_region_1610 5S +chr19 12151105 12151187 - rRNA_region_1611 5S +chr19 17972025 17972072 + rRNA_region_1612 5S +chr19 19707883 19707958 + rRNA_region_1613 5S +chr19 21113125 21113235 - rRNA_region_1614 5S +chr19 22694812 22694856 - rRNA_region_1615 SSU-rRNA_Hsa +chr19 22694852 22694894 - rRNA_region_1616 SSU-rRNA_Hsa +chr19 23999596 23999763 - rRNA_region_1617 LSU-rRNA_Hsa +chr19 23999833 24000000 - rRNA_region_1618 LSU-rRNA_Hsa +chr19 24000004 24000666 - rRNA_region_1619 LSU-rRNA_Hsa +chr19 24000657 24001448 - rRNA_region_1620 LSU-rRNA_Hsa +chr19 24001439 24002381 - rRNA_region_1621 LSU-rRNA_Hsa +chr19 24002399 24003408 - rRNA_region_1622 LSU-rRNA_Hsa +chr19 29001666 29001756 + rRNA_region_1623 5S +chr19 31655393 31655461 - rRNA_region_1624 5S +chr19 32243962 32244073 - rRNA_region_1625 5S +chr19 33011026 33011067 + rRNA_region_1626 5S +chr19 34016877 34016919 - rRNA_region_1627 5S +chr19 34137300 34137342 - rRNA_region_1628 5S +chr19 34652543 34652585 - rRNA_region_1629 5S +chr19 35575603 35575773 + rRNA_region_1630 LSU-rRNA_Hsa +chr19 35575788 35575847 + rRNA_region_1631 LSU-rRNA_Hsa +chr19 41563619 41563820 - rRNA_region_1632 LSU-rRNA_Hsa +chr19 41563831 41564324 - rRNA_region_1633 LSU-rRNA_Hsa +chr19 41564372 41564466 - rRNA_region_1634 LSU-rRNA_Hsa +chr19 41564494 41564943 - rRNA_region_1635 LSU-rRNA_Hsa +chr19 41565364 41565537 - rRNA_region_1636 LSU-rRNA_Hsa +chr19 43406153 43406926 + rRNA_region_1637 LSU-rRNA_Hsa +chr19 43407096 43407202 + rRNA_region_1638 LSU-rRNA_Hsa +chr19 43407513 43408015 + rRNA_region_1639 LSU-rRNA_Hsa +chr19 43821895 43821936 + rRNA_region_1640 5S +chr19 46232354 46232857 - rRNA_region_1641 LSU-rRNA_Hsa +chr19 47008721 47008762 - rRNA_region_1642 5S +chr19 48656789 48656879 - rRNA_region_1643 5S +chr19 51150947 51150991 - rRNA_region_1644 5S +chr19 51783609 51783669 + rRNA_region_1645 LSU-rRNA_Hsa +chr19 51830520 51830573 + rRNA_region_1646 LSU-rRNA_Hsa +chr19 52068258 52068348 + rRNA_region_1647 5S +chr19 52117757 52117837 + rRNA_region_1648 5S +chr19 53624886 53624930 - rRNA_region_1649 5S +chr19 53654969 53655148 - rRNA_region_1650 LSU-rRNA_Hsa +chr19 57581764 57581897 - rRNA_region_1651 LSU-rRNA_Hsa +chr19 57867262 57867352 + rRNA_region_1652 5S +chr19 58363497 58363572 + rRNA_region_1653 5S +chr20 5098386 5098475 - rRNA_region_1654 5S +chr20 15280783 15280867 - rRNA_region_1655 5S +chr20 15952874 15952924 + rRNA_region_1656 5S +chr20 17489012 17489438 + rRNA_region_1657 LSU-rRNA_Hsa +chr20 18433841 18433929 + rRNA_region_1658 5S +chr20 18715492 18715535 - rRNA_region_1659 5S +chr20 21138950 21139072 - rRNA_region_1660 5S +chr20 21484587 21484678 - rRNA_region_1661 5S +chr20 22785198 22785240 - rRNA_region_1662 5S +chr20 23160855 23160964 - rRNA_region_1663 5S +chr20 23380894 23381012 - rRNA_region_1664 5S +chr20 23965697 23965748 - rRNA_region_1665 5S +chr20 29298297 29300157 - rRNA_region_1666 SSU-rRNA_Hsa +chr20 29874058 29874179 + rRNA_region_1667 5S +chr20 30486121 30487974 - rRNA_region_1668 SSU-rRNA_Hsa +chr20 30511698 30513100 - rRNA_region_1669 LSU-rRNA_Hsa +chr20 30513134 30513341 - rRNA_region_1670 LSU-rRNA_Hsa +chr20 30513415 30514664 - rRNA_region_1671 LSU-rRNA_Hsa +chr20 30816153 30816274 - rRNA_region_1672 5S +chr20 31356869 31356958 + rRNA_region_1673 5S +chr20 32008375 32008437 + rRNA_region_1674 5S +chr20 32050587 32050705 + rRNA_region_1675 5S +chr20 32365412 32365455 - rRNA_region_1676 5S +chr20 33842263 33842311 - rRNA_region_1677 5S +chr20 35195305 35195423 + rRNA_region_1678 5S +chr20 40854138 40854229 - rRNA_region_1679 5S +chr20 42539387 42539427 + rRNA_region_1680 5S +chr20 45559755 45559872 - rRNA_region_1681 5S +chr20 46484134 46484240 - rRNA_region_1682 LSU-rRNA_Hsa +chr20 47873196 47873253 + rRNA_region_1683 5S +chr20 50804614 50804656 - rRNA_region_1684 5S +chr20 56205081 56205173 - rRNA_region_1685 5S +chr21 8195671 8195714 + rRNA_region_1686 LSU-rRNA_Hsa +chr21 8196021 8196107 + rRNA_region_1687 LSU-rRNA_Hsa +chr21 8196105 8196636 + rRNA_region_1688 LSU-rRNA_Hsa +chr21 8199657 8199696 + rRNA_region_1689 LSU-rRNA_Hsa +chr21 8209630 8211499 + rRNA_region_1690 SSU-rRNA_Hsa +chr21 8213887 8214734 + rRNA_region_1691 LSU-rRNA_Hsa +chr21 8214772 8218941 + rRNA_region_1692 LSU-rRNA_Hsa +chr21 8253841 8255704 + rRNA_region_1693 SSU-rRNA_Hsa +chr21 8258108 8258957 + rRNA_region_1694 LSU-rRNA_Hsa +chr21 8259001 8260971 + rRNA_region_1695 LSU-rRNA_Hsa +chr21 8378716 8378759 + rRNA_region_1696 LSU-rRNA_Hsa +chr21 8379066 8379152 + rRNA_region_1697 LSU-rRNA_Hsa +chr21 8379150 8379681 + rRNA_region_1698 LSU-rRNA_Hsa +chr21 8382702 8382741 + rRNA_region_1699 LSU-rRNA_Hsa +chr21 8392665 8394534 + rRNA_region_1700 SSU-rRNA_Hsa +chr21 8396925 8397768 + rRNA_region_1701 LSU-rRNA_Hsa +chr21 8397806 8401980 + rRNA_region_1702 LSU-rRNA_Hsa +chr21 8436875 8438744 + rRNA_region_1703 SSU-rRNA_Hsa +chr21 8441145 8441992 + rRNA_region_1704 LSU-rRNA_Hsa +chr21 8442036 8446211 + rRNA_region_1705 LSU-rRNA_Hsa +chr21 8988171 8988748 + rRNA_region_1706 SSU-rRNA_Hsa +chr21 13315691 13315728 + rRNA_region_1707 5S +chr21 14070870 14070988 + rRNA_region_1708 5S +chr21 14084651 14085179 - rRNA_region_1709 LSU-rRNA_Hsa +chr21 14085177 14085264 - rRNA_region_1710 LSU-rRNA_Hsa +chr21 18002470 18002605 - rRNA_region_1711 LSU-rRNA_Hsa +chr21 19054268 19054309 + rRNA_region_1712 5S +chr21 25106740 25106781 + rRNA_region_1713 5S +chr21 25202206 25202296 + rRNA_region_1714 5S +chr21 25855747 25855836 + rRNA_region_1715 SSU-rRNA_Hsa +chr21 29208065 29208107 - rRNA_region_1716 5S +chr21 32483859 32483905 - rRNA_region_1717 5S +chr21 32563077 32563164 + rRNA_region_1718 5S +chr21 32907289 32907390 + rRNA_region_1719 LSU-rRNA_Hsa +chr21 35639938 35639979 + rRNA_region_1720 5S +chr21 36851910 36852029 + rRNA_region_1721 5S +chr21 37264043 37264111 + rRNA_region_1722 LSU-rRNA_Hsa +chr21 37629079 37629121 - rRNA_region_1723 5S +chr21 37822278 37822321 + rRNA_region_1724 5S +chr21 39928163 39928204 + rRNA_region_1725 5S +chr21 42221176 42221287 + rRNA_region_1726 5S +chr21 43708243 43708306 - rRNA_region_1727 LSU-rRNA_Hsa +chr22 11250999 11252848 - rRNA_region_1728 SSU-rRNA_Hsa +chr22 11629545 11631288 + rRNA_region_1729 SSU-rRNA_Hsa +chr22 17623078 17623138 - rRNA_region_1730 LSU-rRNA_Hsa +chr22 20911103 20911237 + rRNA_region_1731 LSU-rRNA_Hsa +chr22 21792439 21792521 + rRNA_region_1732 5S +chr22 21856255 21856362 + rRNA_region_1733 LSU-rRNA_Hsa +chr22 21856381 21856567 + rRNA_region_1734 LSU-rRNA_Hsa +chr22 23127689 23127731 - rRNA_region_1735 5S +chr22 23355779 23355954 + rRNA_region_1736 LSU-rRNA_Hsa +chr22 23415412 23415512 + rRNA_region_1737 5S +chr22 23911441 23911522 - rRNA_region_1738 5S +chr22 25119296 25119345 + rRNA_region_1739 5S +chr22 25715078 25715169 - rRNA_region_1740 5S +chr22 26390654 26390782 - rRNA_region_1741 5S +chr22 29939688 29939730 - rRNA_region_1742 5S +chr22 31305403 31305493 + rRNA_region_1743 5S +chr22 32635109 32635198 - rRNA_region_1744 5S +chr22 33420284 33420326 - rRNA_region_1745 5S +chr22 36316969 36317008 + rRNA_region_1746 5S +chr22 36317022 36317061 + rRNA_region_1747 5S +chr22 36317075 36317114 + rRNA_region_1748 5S +chr22 39248728 39248826 + rRNA_region_1749 5S +chr22 40647643 40647685 + rRNA_region_1750 5S +chr22 42134227 42134279 - rRNA_region_1751 5S +chrUn_GL000220v1 95180 95223 + rRNA_region_1752 LSU-rRNA_Hsa +chrUn_GL000220v1 95530 95616 + rRNA_region_1753 LSU-rRNA_Hsa +chrUn_GL000220v1 95614 96145 + rRNA_region_1754 LSU-rRNA_Hsa +chrUn_GL000220v1 99158 99197 + rRNA_region_1755 LSU-rRNA_Hsa +chrUn_GL000220v1 109077 110946 + rRNA_region_1756 SSU-rRNA_Hsa +chrUn_GL000220v1 113347 114194 + rRNA_region_1757 LSU-rRNA_Hsa +chrUn_GL000220v1 114238 118417 + rRNA_region_1758 LSU-rRNA_Hsa +chrUn_GL000220v1 153049 154918 + rRNA_region_1759 SSU-rRNA_Hsa +chrUn_GL000220v1 157319 158166 + rRNA_region_1760 LSU-rRNA_Hsa +chrUn_GL000220v1 158210 161802 + rRNA_region_1761 LSU-rRNA_Hsa +chrUn_KI270442v1 218459 220324 - rRNA_region_1762 SSU-rRNA_Hsa +chrUn_KI270442v1 380607 380728 + rRNA_region_1763 5S +chr3_KI270778v1_alt 212904 212966 - rRNA_region_1764 5S +chr4_GL383528v1_alt 344695 344748 - rRNA_region_1765 5S +chr4_KI270790v1_alt 204371 204407 + rRNA_region_1766 5S +chr4_KI270896v1_alt 352668 352788 + rRNA_region_1767 5S +chr4_KI270896v1_alt 355227 355348 + rRNA_region_1768 5S +chr5_GL339449v2_alt 1491487 1491571 - rRNA_region_1769 5S +chr5_KI270897v1_alt 1022974 1023058 - rRNA_region_1770 5S +chr6_GL000250v2_alt 1027966 1028035 - rRNA_region_1771 LSU-rRNA_Hsa +chr6_GL000250v2_alt 3411136 3411228 - rRNA_region_1772 5S +chr6_GL000251v2_alt 1245916 1245985 - rRNA_region_1773 LSU-rRNA_Hsa +chr6_GL000251v2_alt 2707710 2707749 + rRNA_region_1774 SSU-rRNA_Hsa +chr6_GL000251v2_alt 3516873 3516965 - rRNA_region_1775 5S +chr6_GL000252v2_alt 1025143 1025212 - rRNA_region_1776 LSU-rRNA_Hsa +chr6_GL000252v2_alt 2484598 2484637 + rRNA_region_1777 SSU-rRNA_Hsa +chr6_GL000252v2_alt 3319942 3320034 - rRNA_region_1778 5S +chr6_GL000253v2_alt 1024738 1024807 - rRNA_region_1779 LSU-rRNA_Hsa +chr6_GL000253v2_alt 2535828 2535867 + rRNA_region_1780 SSU-rRNA_Hsa +chr6_GL000253v2_alt 3383541 3383633 - rRNA_region_1781 5S +chr6_GL000254v2_alt 1024809 1024878 - rRNA_region_1782 LSU-rRNA_Hsa +chr6_GL000254v2_alt 2569513 2569552 + rRNA_region_1783 SSU-rRNA_Hsa +chr6_GL000254v2_alt 3420567 3420659 - rRNA_region_1784 5S +chr6_GL000255v2_alt 1025117 1025186 - rRNA_region_1785 LSU-rRNA_Hsa +chr6_GL000255v2_alt 2483370 2483409 + rRNA_region_1786 SSU-rRNA_Hsa +chr6_GL000255v2_alt 3301740 3301832 - rRNA_region_1787 5S +chr6_GL000256v2_alt 1068294 1068363 - rRNA_region_1788 LSU-rRNA_Hsa +chr6_GL000256v2_alt 2528711 2528750 + rRNA_region_1789 SSU-rRNA_Hsa +chr6_GL000256v2_alt 2774623 2774806 + rRNA_region_1790 LSU-rRNA_Hsa +chr6_KI270798v1_alt 136878 136957 + rRNA_region_1791 5S +chr8_KI270813v1_alt 75147 75237 + rRNA_region_1792 5S +chr8_KI270822v1_alt 161830 161870 + rRNA_region_1793 5S +chr14_KI270844v1_alt 271683 271767 - rRNA_region_1794 5S +chr14_KI270846v1_alt 1128350 1128440 + rRNA_region_1795 5S +chr15_KI270849v1_alt 39127 39170 + rRNA_region_1796 5S +chr15_KI270850v1_alt 379542 379584 - rRNA_region_1797 5S +chr16_GL383556v1_alt 61458 61643 - rRNA_region_1798 LSU-rRNA_Hsa +chr16_GL383556v1_alt 65352 65640 + rRNA_region_1799 LSU-rRNA_Hsa +chr16_KI270853v1_alt 951424 951454 + rRNA_region_1800 5S +chr16_KI270853v1_alt 1284462 1284537 + rRNA_region_1801 5S +chr16_KI270853v1_alt 1892200 1892230 - rRNA_region_1802 5S +chr17_GL000258v2_alt 17910 18000 - rRNA_region_1803 5S +chr17_GL000258v2_alt 245977 246019 - rRNA_region_1804 5S +chr17_GL000258v2_alt 463912 463954 - rRNA_region_1805 5S +chr17_GL000258v2_alt 1491449 1491491 + rRNA_region_1806 5S +chr17_KI270857v1_alt 575041 575090 - rRNA_region_1807 5S +chr17_KI270857v1_alt 726135 726226 - rRNA_region_1808 5S +chr17_KI270857v1_alt 2179351 2179400 - rRNA_region_1809 5S +chr17_KI270857v1_alt 2767118 2767239 - rRNA_region_1810 5S +chr17_KI270908v1_alt 17910 18000 - rRNA_region_1811 5S +chr17_KI270908v1_alt 259792 259834 - rRNA_region_1812 5S +chr17_KI270908v1_alt 642420 642462 + rRNA_region_1813 5S +chr17_KI270908v1_alt 1025046 1025088 + rRNA_region_1814 5S +chr18_GL383567v1_alt 26810 26903 + rRNA_region_1815 5S +chr19_KI270867v1_alt 116463 116636 + rRNA_region_1816 LSU-rRNA_Hsa +chr19_KI270867v1_alt 117057 117506 + rRNA_region_1817 LSU-rRNA_Hsa +chr19_KI270867v1_alt 117534 117628 + rRNA_region_1818 LSU-rRNA_Hsa +chr19_KI270867v1_alt 117676 118169 + rRNA_region_1819 LSU-rRNA_Hsa +chr19_KI270867v1_alt 118180 118381 + rRNA_region_1820 LSU-rRNA_Hsa +chr22_KB663609v1_alt 56556 56608 - rRNA_region_1821 5S +chr22_KB663609v1_alt 68712 68764 - rRNA_region_1822 5S +chr22_KI270878v1_alt 1737 1912 + rRNA_region_1823 LSU-rRNA_Hsa +chr22_KI270878v1_alt 61370 61470 + rRNA_region_1824 5S +chr22_KI270879v1_alt 147803 147884 - rRNA_region_1825 5S +chr22_KI270928v1_alt 56572 56624 - rRNA_region_1826 5S +chr16_KI270728v1_random 1438312 1438353 - rRNA_region_1827 5S +chr22_KI270733v1_random 111909 111952 + rRNA_region_1828 LSU-rRNA_Hsa +chr22_KI270733v1_random 112258 112344 + rRNA_region_1829 LSU-rRNA_Hsa +chr22_KI270733v1_random 112342 112873 + rRNA_region_1830 LSU-rRNA_Hsa +chr22_KI270733v1_random 115894 115933 + rRNA_region_1831 LSU-rRNA_Hsa +chr22_KI270733v1_random 125930 127799 + rRNA_region_1832 SSU-rRNA_Hsa +chr22_KI270733v1_random 130203 131050 + rRNA_region_1833 LSU-rRNA_Hsa +chr22_KI270733v1_random 131094 133689 + rRNA_region_1834 LSU-rRNA_Hsa +chr22_KI270733v1_random 133724 135280 + rRNA_region_1835 LSU-rRNA_Hsa +chr22_KI270733v1_random 171011 172880 + rRNA_region_1836 SSU-rRNA_Hsa +chr22_KI270733v1_random 175282 176129 + rRNA_region_1837 LSU-rRNA_Hsa +chr22_KI270733v1_random 176173 178768 + rRNA_region_1838 LSU-rRNA_Hsa +chr22_KI270733v1_random 178803 179772 + rRNA_region_1839 LSU-rRNA_Hsa +chr9 9442142 9442166 - s7426,s13418,s4841,s9761,s7409,s13418,s4841,s7409 +chr9 9442142 9442166 + s13754,s11762,s18754,s5930,s9585,s18017,s9585,s13418,s18020,s13422,s7239,s6411,s13297,s18031,s8982,s11366,s18022,s8612,s8652,s11762,s6727r1,s11364,s7314,s18022,s13422,s7314,s11357,s11397,s6730,s11365,s11751,s13311,s8828,s11397,s7247,s11751,s13416,s8984,s7248,s11324,s18020,s9575,s11357,s11360,s13302,s13426,s13749,s18758,s11366,s11377,s8965,s11324,s8984,s7250,s18020,s13422,s13304,s8977,s11361,s18749,s8614,s13623,s14432,s11338,s9063,s11386,s13633,s18748,s14461,s9473,s14435 +chr15 77618589 77618609 - s9064,s11326,s5938,s9066,s6720,s8828,s11326,s13761,s9473,s14441,s11326,s8984,s7431,s6046,s20342,s18017,s13749,s15679,s13749,s10014,s9064,s14447,s13418,s4970,s18031,s13761,s13761,s18037,s9585,s18259,s13418,s11750,s9064,s13761,s11397,s13771,s9066,s13761,s11324,s18020,s14441,s13299r1,s6016,s14455,s18037,s4958,s11368,s6719,s14437,s9065,s9761,s13625,s13754,s9585,s10014,s8984,s7310,s13770,s13428,s13622,s9473,s8982,s9473,s8620,s8977,s13418,s8620,s11361,s20342,s8984,s11326,s13297,s13358,s7250,s13626,s13632,s8828,s13622,s7427,s7427r2,s18020,s7241,s8828,s7454,s20342,s11326,s13298r1,s15679,s15680,s9066,s8982,s11326,s7428,s11326,s13761,s13296,s13418,s13754,s11324,s7428,s11326,s11324,s11324,s11326,s11326,s14441,s9571,s11324,s11324,s9004,s13418,s8982,s8965,s8828,s13749,s7428,s7239,s7454,s11326,s8616,s18024,s9473,s18259,s20345,s11751,s11751,s11326,s7314,s13428,s18031,s9571,s14435,s11751,s18259,s9004,s11326,s13418,s11326,s11324,s13749,s18259,s7239,s6046,s18259,s11326,s11324,s13770,s11745,s13428,s13749,s13622,s11751,s9473,s11751,s7239,s7314,s9473,s13633,s18037,s18259,s20343,s7239,s9575,s15680,s6046,s18259,s9473,s11751,s11354,s11751,s13296,s13297,s13311,s13633,s14441,s18020,s18259,s20343,s5947,s7239,s7314,s8615,s9568,s13766,s18259,s11324,s6046,s11324,s11326,s9758,s11326,s13428,s18022,s20342,s20343,s7239,s18024,s7428,s8828,s9064,s11326,s10014,s6046,s11326,s7454,s13298r2,s7314,s11354,s18017,s20343,s18259,s11326,s11324,s13418,s11751,s9571,s18031,s9571,s11751,s13770,s9568,s11324,s11383,s11324,s11326,s11324,s11326,s11324,s11326,s18259,s9473,s11326,s9571,s18022,s11326,s11326,s13749,s11326,s13298r2,s13299r2,s18022,s18024,s6720,s20342,s9064,s20345,s11751,s9758,s7431,s6046,s9004,s7239,s11368,s11751,s13622,s13770,s18017,s18022,s8652,s13749,s20345,s13749,s9004,s10014,s11324,s11751,s11326,s9004,s13761,s14432,s13749,s11326,s9775,s6731,s13754,s9758,s8616,s13633,s18022,s20342,s6720,s7314,s7454,s9473,s9571,s11326,s13749,s9473,s11354,s13311,s13622,s18022,s7239,s7314,s8616,s18017,s11751,s11326,s18024,s11326,s13296,s20343,s18031,s11326,s13770,s13428,s18259,s20345,s18022,s20343,s8982,s9473,s13299r2,s13622,s20345,s11326,s11326,s11324,s13761,s9596,s18031,s18037,s11324,s11326,s13761,s7239,s9473,s9758,s11326,s18024,s9571,s18022,s20342,s9585,s20345,s8984,s11324,s11325,s11751,s13749,s9571,s20343,s11326 +chr2 32916285 32916597 - s8832,s11397,s18007,s8982,s8614,s9844,s11751,s13424,s13311,s18022,s7433a2,s10014,s9585,s9579,s9064,s13298r1,s4975,s9589,s8832,s8611,s10014,s9571,s18017,s7248,s5945,s18017,s8614,s4845a2,s13752,s13752,s18020,s6046,s8828,s9575,s11326,s8977,s11377,s9584,s13633,s6722,s8622,s11817,s8977,s4954,s18022,s9568,s13298r1,s8828,s8982,s13296,s18151,s13421,s4836,s9847,s4845,s14435,s8615,s13424,s9608,s8828,s10014,s11368,s7409a2,s13761,s8616,s18022,s18022,s11394,s18022,s4841,s13296,s5947,s14435,s5960,s18151,s18037,s6727r1,s13297,s8618,s13311,s8828,s9758,s9755,s18754,s15679,s13420,s9579,s5960,s6722,s13420,s8828,s10014,s18022,s9571,s10011,s13298r2,s18037,s18024,s9541,s7428,s9606,s10014,s9064,s11751,s13311,s9606,s9571,s14460,s5961,s8616,s18037,s7426,s7241,s6018,s14455,s13426,s13298r1,s10011,s4845,s11380,s18022,s9755,s11762,s18022,s13298r1,s11326,s8618,s9571,s18022,s13418,s13424,s14447,s7427,s7427r2,s4955,s9064,s13296,s6727r1,s4836,s8984,s18017,s5938,s14432,s9063,s11385,s4975,s9571,s9568,s7426,s5933,s9568,s6046,s6018,s18022,s5934,s8615,s11817,s8828,s18020,s6016,s8830,s11326,s9064,s9845,s11819,s7409a2,s11365,s14435 +chr2 32916229 32916503 + s11338,s13619,s9064,s8616,s13749,s8623,s9575,s11383,s13766,s9758,s9589,s18022,s9755,s7247,s7248,s11340,s8616,s8615,s9064,s13768,s18020,s13298r1,s11819,s11751,s9473,s9001,s11762,s13311,s6418,s5933,s11360,s9770c,s11762,s7409a2,s13625,s11399,s18751,s11760,s9578,s11751,s8982,s13298r2,s7428,s8982,s9464,s10014,s18022,s13311,s8614,s18037,s11751,s9464,s10014,s18748,s8965,s13769,s11754,s6727r1,s9585,s9845,s11384 +chr12 66057580 66057683 - poly-A sequence +chr12 66057580 66057683 + poly-A sequence +chr4 1707224 1707301 - s6046,s6731,s11324,s11326,s11354,s11368,s11380,s11383,s11751,s13296,s13297,s13298,s13299,s13311,s13358,s13622,s13633,s13761,s13770,s14441,s14447,s15679,s15680,s18017,s18020,s18022,s18024,s18031,s18259,s20342,s20343,s20344,s20345,s5948,s6720,s6721,s7239,s7314,s7318,s7427,s7427,s7428,s7431,s7454,s8615,s8616,s8620,s8830,s8965,s9004,s9065,s9473,s9568,s9571,s9575,s9578,s9596,s9758,s9770 +chr4 1707224 1707301 + s6046,s6731,s11324,s11326,s11354,s11368,s11380,s11383,s11751,s13296,s13297,s13298,s13299,s13311,s13358,s13622,s13633,s13761,s13770,s14441,s14447,s15679,s15680,s18017,s18020,s18022,s18024,s18031,s18259,s20342,s20343,s20344,s20345,s5948,s6720,s6721,s7239,s7314,s7318,s7427,s7427,s7428,s7431,s7454,s8615,s8616,s8620,s8830,s8965,s9004,s9065,s9473,s9568,s9571,s9575,s9578,s9596,s9758,s9770 +chr6 160100708 160100822 - poly-T +chr6 160100708 160100822 + poly-T +chr7 107769944 107770310 + poly-T +chr7 107769944 107770310 - poly-T s10014,s11324,s11325,s11326,s11354,s11359,s11365,s11750,s11751,s13296,s13297,s13299r1,s13311,s13358,s13418,s13428,s13622,s13633,s13749,s13761,s15679,s18017,s18022,s18024,s18037,s18259,s20342,s20344,s20345,s4970,s6727r1,s7239,s7250,s7314,s7318,s7428,s7431,s7454,s8616,s8828,s8830,s8832,s8965,s8984,s9066,s9067,s9473,s9571,s9575,s9578,s9596 +chr14 20343071 20343409 - prtcl/001,003,005,007,008,011,013,015,016,019,020,021,024,025,026,032,033,035,036,037,038,039,040,125,140,141,143,147,149,151 +chr14 20343071 20343409 + prtcl/001,003,005,007,008,011,013,015,016,019,020,021,024,025,026,032,033,035,036,037,038,039,040,125,140,141,143,147,149,151 +chr14 49862551 49862844 - prtcl/001,004,005,006,007,008,011,013,014,015,016,019,020,021,022,024,025,026,031,032,033,035,036,037,039,040,125,140,141,143,145,147,149,151 +chr14 49862551 49862844 + prtcl/001,004,005,006,007,008,011,013,014,015,016,019,020,021,022,024,025,026,031,032,033,035,036,037,039,040,125,140,141,143,145,147,149,151 +chr14 49586579 49586876 - prtcl/001,003,004,005,006,007,008,011,013,014,015,016,019,020,021,022,024,025,026,031,032,033,035,036,037,038,039,040,125,140,143,145,147,149,151 +chr14 49586579 49586876 + prtcl/001,003,004,005,006,007,008,011,013,014,015,016,019,020,021,022,024,025,026,031,032,033,035,036,037,038,039,040,125,140,143,145,147,149,151 +chr6 52995642 52995925 - prtcl/001,005,006,007,008,011,013,014,015,016,019,020,021,022,024,025,026,035,036,037,038,039,040,125,126,140,143,144,149,151 +chr6 52995642 52995925 + prtcl/001,005,006,007,008,011,013,014,015,016,019,020,021,022,024,025,026,035,036,037,038,039,040,125,126,140,143,144,149,151 +chr9 9442046 9442312 + prtcl/015,032,011,022,015,008,151,145,036,151,038,144,006,040,039,022,039,001,015,011,025,025,035,016,039,152,141,016,001,126,143 +chr9 9442046 9442312 - prtcl/015,032,011,022,015,008,151,145,036,151,038,144,006,040,039,022,039,001,015,011,025,025,035,016,039,152,141,016,001,126,143 +chr9 35657860 35658010 - prtcl/025,036,026,033,149,126,020,014,024,126,125 +chr10 20072337 20072587 - low entropy +chr10 20072337 20072587 + low entropy +chr10 20162004 20162265 - low entropy +chr10 20162004 20162265 + low entropy +chr10 2178559 2178996 - low entropy +chr10 2178559 2178996 + low entropy +chr10 29724369 29724405 - poly-AC +chr10 29724369 29724405 + poly-AC +chr10 37305715 37305867 - low entropy +chr10 37305715 37305867 + low entropy +chr10 37428317 37428541 - low entropy +chr10 37428317 37428541 + low entropy +chr10 72805070 72805275 - low entropy +chr10 72805070 72805275 + low entropy +chr10 82398479 82398559 - low entropy +chr10 82398479 82398559 + low entropy +chr11 108573045 108573248 - low entropy +chr11 108573045 108573248 + low entropy +chr1 117804123 117804287 - low entropy +chr1 117804123 117804287 + low entropy +chr11 21337666 21337939 - low entropy +chr11 21337666 21337939 + low entropy +chr11 3216774 3217087 - low entropy +chr11 3216774 3217087 + low entropy +chr11 58178852 58179061 - low entropy +chr11 58178852 58179061 + low entropy +chr11 81487516 81487721 - low entropy +chr11 81487516 81487721 + low entropy +chr1 19048366 19048502 - low entropy +chr1 19048366 19048502 + low entropy +chr1 197544654 197545083 - low entropy +chr1 197544654 197545083 + low entropy +chr1 201734402 201734541 - low entropy +chr1 201734402 201734541 + low entropy +chr1 204012533 204012747 - low entropy +chr1 204012533 204012747 + low entropy +chr12 120553001 120553138 - poly-T +chr12 120553001 120553138 + poly-T +chr12 62629278 62629420 - low entropy +chr12 62629278 62629420 + low entropy +chr12 6769910 6770023 - low entropy +chr12 6769910 6770023 + low entropy +chr12 68941143 68941222 - low entropy +chr12 68941143 68941222 + low entropy +chr13 106281901 106281966 - low entropy +chr13 106281901 106281966 + low entropy +chr13 29659839 29660031 - low entropy +chr13 29659839 29660031 + low entropy +chr13 42026354 42026496 - poly-GA +chr13 42026354 42026496 + poly-GA +chr13 95225082 95225221 - low entropy +chr13 95225082 95225221 + low entropy +chr14 36033358 36033442 - low entropy +chr14 36033358 36033442 + low entropy +chr1 48769524 48769572 - poly-AC +chr1 48769524 48769572 + poly-AC +chr14 90125564 90125660 - poly-AC +chr14 90125564 90125660 + poly-AC +chr14 94449377 94449646 - low entropy +chr14 94449377 94449646 + low entropy +chr15 36521423 36521745 - low entropy +chr15 36521423 36521745 + low entropy +chr15 64951229 64955078 - low entropy +chr15 64951229 64955078 + low entropy +chr15 77618497 77618627 - poly-T +chr15 77618497 77618627 + poly-T +chr15 97539674 97539934 - low entropy +chr15 97539674 97539934 + low entropy +chr1 61925154 61925296 - poly-A +chr1 61925154 61925296 + poly-A +chr16 19666864 19667013 - low entropy +chr16 19666864 19667013 + low entropy +chr16 20345319 20345620 - low entropy +chr16 20345319 20345620 + low entropy +chr16 26557200 26557405 - low entropy +chr16 26557200 26557405 + low entropy +chr16 62041635 62041691 - low entropy +chr16 62041635 62041691 + low entropy +chr16 6350397 6350543 - poly-A +chr16 6350397 6350543 + poly-A +chr16 9193171 9193369 - low entropy +chr16 9193171 9193369 + low entropy +chr18 14822920 14823041 - poly-T +chr18 14822920 14823041 + poly-T +chr18 63063590 63063766 - poly-T +chr18 63063590 63063766 + poly-T +chr18 63169224 63169548 - low entropy +chr18 63169224 63169548 + low entropy +chr18 68096260 68096545 - low entropy +chr18 68096260 68096545 + low entropy +chr18 79969169 79969422 - low entropy +chr18 79969169 79969422 + low entropy +chr19 2308137 2308224 - low entropy +chr19 2308137 2308224 + low entropy +chr19 31085760 31085995 - low entropy +chr19 31085760 31085995 + low entropy +chr19 3465391 3465470 - poly-A +chr19 3465391 3465470 + poly-A +chr20 2248960 2249148 - low entropy +chr20 2248960 2249148 + low entropy +chr20 34228111 34228237 - low entropy +chr20 34228111 34228237 + low entropy +chr20 52192689 52192892 - low entropy +chr20 52192689 52192892 + low entropy +chr20 62767362 62767727 - low entropy +chr20 62767362 62767727 + low entropy +chr2 103585550 103585834 - low entropy +chr2 103585550 103585834 + low entropy +chr21 31804334 31804521 - low entropy +chr21 31804334 31804521 + low entropy +chr2 141047043 141047111 - low entropy +chr2 141047043 141047111 + low entropy +chr2 141331470 141331563 - low entropy +chr2 141331470 141331563 + low entropy +chr2 141544281 141544486 - low entropy +chr2 141544281 141544486 + low entropy +chr2 141691414 141691495 - low entropy +chr2 141691414 141691495 + low entropy +chr2 141910126 141910216 - poly A +chr2 141910126 141910216 + poly A +chr2 169299023 169299225 - low entropy +chr2 169299023 169299225 + low entropy +chr2 201165216 201165304 - low entropy +chr2 201165216 201165304 + low entropy +chr2 206071238 206071339 - poly-T +chr2 206071238 206071339 + poly-T +chr22 32814101 32814398 - low entropy +chr22 32814101 32814398 + low entropy +chr2 234263709 234263852 - low entropy +chr2 234263709 234263852 + low entropy +chr22 37255495 37256005 - low entropy +chr22 37255495 37256005 + low entropy +chr22_KI270733v1_random 127986 128025 - poly-GA +chr22_KI270733v1_random 127986 128025 + poly-GA +chr2 32866665 32867138 - low entropy +chr2 32866665 32867138 + low entropy +chr2 32916159 32916658 - poly-G +chr2 32916159 32916658 + poly-G +chr2 88856757 89219622 - IGK +chr2 88856757 89219622 + IGK +chr3 130634202 130634266 - poly-A/T prtcl +chr3 130634202 130634266 + poly-A/T prtcl +chr3 132325578 132325631 - low entropy +chr3 132325578 132325631 + low entropy +chr3 132358019 132358110 - low entropy +chr3 132358019 132358110 + low entropy +chr3 171562436 171562858 - low entropy +chr3 171562436 171562858 + low entropy +chr3 175232179 175232290 - low entropy +chr3 175232179 175232290 + low entropy +chr3 175667052 175667279 - low entropy +chr3 175667052 175667279 + low entropy +chr3 181231822 181231850 - SOX-OT/SNOR./RNA duplicates +chr3 191699475 191699857 - low entropy +chr3 191699475 191699857 + low entropy +chr3 39197811 39198015 - low entropy +chr3 39197811 39198015 + low entropy +chr3 69714445 69714481 - poly-AC +chr3 69714445 69714481 + poly-AC +chr4 140069317 140069737 - low entropy +chr4 140069317 140069737 + low entropy +chr4 146133497 146133594 - low entropy +chr4 146133497 146133594 + low entropy +chr4 21528664 21528881 - low entropy +chr4 21528664 21528881 + low entropy +chr4 37605722 37606255 - low entropy +chr4 37605722 37606255 + low entropy +chr5 161839495 161840043 - low entropy +chr5 161839495 161840043 + low entropy +chr5 50621634 50622070 - low entropy +chr5 50621634 50622070 + low entropy +chr5 67532980 67533076 - low entropy +chr5 67532980 67533076 + low entropy +chr6 149042949 149043118 - low entropy +chr6 149042949 149043118 + low entropy +chr6 46807500 46807869 - low entropy +chr6 46807500 46807869 + low entropy +chr6 57833141 57833279 - low entropy +chr6 57833141 57833279 + low entropy +chr6 84233090 84233140 - poly-CT +chr6 84233090 84233140 + poly-CT +chr6 90037964 90037990 - low entropy +chr6 90037964 90037990 + low entropy +chr6 90377599 90377875 - low entropy +chr6 90377599 90377875 + low entropy +chr6 9795135 9795402 - low entropy +chr6 9795135 9795402 + low entropy +chr7 111539104 111539279 - low entropy +chr7 111539104 111539279 + low entropy +chr7 126477532 126477715 - low entropy +chr7 126477532 126477715 + low entropy +chr7 131828658 131829106 - low entropy +chr7 131828658 131829106 + low entropy +chr7 31599553 31599730 - low entropy +chr7 31599553 31599730 + low entropy +chr7 88419744 88420045 - low entropy +chr7 88419744 88420045 + low entropy +chr7 905292 906668 - low entropy +chr7 905292 906668 + low entropy +chr8 115498354 115498461 - low entropy +chr8 115498354 115498461 + low entropy +chr8 30913946 30914055 - low entropy +chr8 30913946 30914055 + low entropy +chrX 119711699 119711899 - low entropy +chrX 119711699 119711899 + low entropy +chrX 119801608 119802269 - low entropy +chrX 119801608 119802269 + low entropy +chrX 17050103 17050214 - low entropy +chrX 17050103 17050214 + low entropy +chrX 40110630 40110744 - poly-T +chrX 40110630 40110744 + poly-T +chrX 64287970 64289700 - poly-A +chrX 64287970 64289700 + poly-A +chrX 71094169 71094398 - low entropy +chrX 71094169 71094398 + low entropy +chrX 79200325 79200485 - poly-A +chrX 79200325 79200485 + poly-A +chrX 82680111 82680434 - low entropy +chrX 82680111 82680434 + low entropy
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.in.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,37 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 unclassified linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 unclassified linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 unclassified circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 unclassified circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 unclassified circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 unclassified circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 unclassified circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 unclassified circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 unclassified circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 unclassified circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 unclassified circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 unclassified circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 unclassified circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 unclassified circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 unclassified circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 unclassified circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 unclassified circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 unclassified circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 unclassified circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 unclassified linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 unclassified circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 unclassified circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 unclassified linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 unclassified linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 unclassified circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.test-01.out.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,37 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.test-02.out.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,3 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.test-03.out.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,37 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.test-04.out.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,37 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.test-05.out.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,37 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.test-06.out.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,37 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.test-07.out.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,37 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/classify_test_16.test-08.out.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,37 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39817544 - 140 0 chr21 42880007 + 0 140 3062463 valid linear exonic 253 170 85 6 5 2 4 1 0 0.8111 0.8497 0.0000 0.9535 0.7247 63.7843 0.8440 0.0000 0.0559 0.3651 17.3030 0.8378 0.0000 0.0289 0.0706 0.3360 1.2000 chr21:39817544/39817545(-)->chr21:42880007/42880008(+):(spanning_paired_1:65,spanning_paired_2:65,spanning_singleton_1:2,spanning_singleton_1_r:3,spanning_singleton_2:2,spanning_singleton_2_r:3)&chr21:39817544/39817545(-)->chr21:42879876/42879877(+):(discordant_mates:10,spanning_paired_1:6,spanning_paired_1_t:1,spanning_paired_2:6,spanning_paired_2_t:1,spanning_singleton_1_r:2,spanning_singleton_2_r:2)&chr21:39817544/39817545(-)->chr21:42878371/42878372(+):(discordant_mates:2,spanning_paired_1:1,spanning_paired_1_t:1,spanning_paired_2:1,spanning_paired_2_t:1,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39846044/39846045(-)->chr21:42879876/42879877(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:39817544/39817545(-)->chr21:42876293/42876294(+):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39877811 - 98 0 chr21 42873374 + 0 98 2995563 valid linear intronic 91 42 21 28 1 1 1 0 0 0.9528 0.9528 0.0000 0.8200 2.9207 17.3314 0.9125 0.0000 0.1910 1.5880 68.1747 0.8769 0.0000 0.1269 1.3333 0.2308 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(discordant_mates:56,spanning_paired_1:12,spanning_paired_1_t:9,spanning_paired_2:12,spanning_paired_2_t:9) +chr21 42861433 + 6 18 chr21 42866505 - 18 6 5072 n_discordant_reads=2<3 circular exonic 41 30 14 2 7 5 6 1 2 1.0000 0.9375 18.7474 0.7500 26.9000 3.0000 0.9425 0.0164 5.5097 20.1000 42.8000 0.8833 0.0470 6.1587 0.1429 0.3659 1.5714 chr21:42861433/42861434(+)->chr21:42866505/42866506(-):(discordant_mates:2,spanning_paired_1:2,spanning_paired_1_t:1,spanning_paired_2:2,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42861433/42861434(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3,spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:42860568/42860569(+)->chr21:42867210/42867211(-):(spanning_paired_1_t:2,spanning_paired_2_t:2)&chr21:42860320/42860321(+)->chr21:42861520/42861521(-):(spanning_paired_1:1,spanning_paired_2:1,spanning_singleton_1:1,spanning_singleton_2:1)&chr21:42859986/42859987(+)->chr21:42863878/42863879(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:42860320/42860321(+)->chr21:42866505/42866506(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:42866446/42866447(+)->chr21:42870110/42870111(-):(discordant_mates:2) +chr21 39836011 + 0 8 chr21 39836545 - 8 0 534 n_support=6<8,bp_pos_stddev=25.3065>15.0,log_ratio_slope=9.62>1.8,log_ratio_rvalue=8.96>0.4 circular intronic 17 12 6 0 2 2 2 0 0 0.4056 0.6934 25.3065 0.0000 1.5000 29.5000 0.7746 0.2254 0.8660 0.0000 93.0000 0.0000 1.0000 0.0000 0.0000 0.3529 2.0000 chr21:39836011/39836012(+)->chr21:39836545/39836546(-):(spanning_paired_1_t:4,spanning_paired_2_t:4)&chr21:39835707/39835708(+)->chr21:39839850/39839851(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39875880 + 0 6 chr21 39876476 - 6 0 596 entropy=0.0<0.6839,n_support=4<8 circular intronic 12 8 4 0 2 2 2 0 0 0.0000 0.4056 0.0000 0.0000 0.0000 68.0000 0.0000 1.0000 0.0000 0.0000 58.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39875880/39875881(+)->chr21:39876476/39876477(-):(spanning_paired_1:3,spanning_paired_2:3)&chr21:39874280/39874281(+)->chr21:39876277/39876278(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39851814 + 0 6 chr21 39852667 - 6 0 853 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39851814/39851815(+)->chr21:39852667/39852668(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39859611 + 0 6 chr21 39860278 - 6 0 667 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 40.0000 0.0000 1.0000 0.0000 0.0000 86.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39859611/39859612(+)->chr21:39860278/39860279(-):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr21 39883871 + 0 6 chr21 39885212 - 6 0 1341 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 6 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 94.0000 0.0000 1.0000 0.0000 0.0000 32.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39883871/39883872(+)->chr21:39885212/39885213(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 42843732 + 0 6 chr21 42870116 - 6 0 26384 entropy=0.0<0.6835,n_support=3<7 circular intronic 9 11 3 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 0.0000 72.0000 0.0000 1.0000 0.0000 0.0000 0.6111 2.0000 chr21:42843732/42843733(+)->chr21:42870116/42870117(-):(spanning_paired_1:3,spanning_paired_2:3) +chr21 39755685 + 0 6 chr21 39775541 - 6 0 19856 entropy=0.5794<0.6833,n_support=3<7,log_ratio_slope=2.54>1.8 circular intronic 7 4 2 1 1 1 1 0 0 0.5794 0.5794 0.0000 1.0000 19.0000 81.6667 0.8660 0.3333 10.9697 1.5000 34.5000 0.8660 0.3333 0.8660 0.5000 0.2857 2.0000 chr21:39755685/39755686(+)->chr21:39775541/39775542(-):(discordant_mates:2,spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39834195 + 0 4 chr21 39840659 - 4 0 6464 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 2.0000 54.0000 1.0000 0.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39834195/39834196(+)->chr21:39840659/39840660(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39842038 + 0 4 chr21 39843053 - 4 0 1015 n_support=2<7,log_ratio_slope=11.29>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 80.0000 0.0000 1.0000 0.0000 8.0000 38.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39842038/39842039(+)->chr21:39843053/39843054(-):(spanning_paired_1:2,spanning_paired_2:2) +chr21 39850667 + 0 4 chr21 39854268 - 4 0 3601 n_support=2<7,log_ratio_slope=9.21>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 46.0000 0.0000 1.0000 0.0000 1.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:39850667/39850668(+)->chr21:39854268/39854269(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 42877474 + 0 4 chr21 42878062 - 4 0 588 n_support=2<7,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 6 4 2 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 0.0000 97.0000 0.0000 1.0000 0.0000 2.0000 27.0000 1.0000 0.0000 0.0000 0.0000 0.3333 2.0000 chr21:42877474/42877475(+)->chr21:42878062/42878063(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39766042 + 0 4 chr21 39766803 - 4 0 761 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 70.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39766042/39766043(+)->chr21:39766803/39766804(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39797816 + 0 4 chr21 39803772 - 4 0 5956 entropy=0.0<0.6832,n_support=2<7 circular intronic 6 4 2 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 28.0000 0.0000 1.0000 0.0000 0.0000 98.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39797816/39797817(+)->chr21:39803772/39803773(-):(spanning_paired_1_t:2,spanning_paired_2_t:2) +chr21 39874520 + 2 2 chr21 39875907 - 2 2 1387 n_support=2<7,bp_pos_stddev=45.4588>15.0,log_ratio_slope=9.9>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 5 4 2 0 1 1 1 0 0 1.0000 1.0000 45.4588 0.0000 0.0000 45.0000 0.0000 1.0000 0.0000 2.0000 79.0000 1.0000 0.0000 0.0000 0.0000 0.4000 2.0000 chr21:39874520/39874521(+)->chr21:39875907/39875908(-):(spanning_paired_1_t:1,spanning_paired_2_t:1,spanning_singleton_1:1,spanning_singleton_2:1) +chr21 39844342 + 2 0 chr21 39845160 - 0 2 818 n_support=2<8 circular intronic 3 3 1 1 2 2 2 0 0 0.0000 1.0000 0.0000 0.0000 0.0000 73.0000 0.0000 1.0000 0.0000 0.0000 53.0000 0.0000 1.0000 0.0000 1.0000 0.5000 2.0000 chr21:39844342/39844343(+)->chr21:39845160/39845161(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1)&chr21:39843961/39843962(+)->chr21:39845291/39845292(-):(discordant_mates:2) +chr21 39768473 + 0 2 chr21 39768936 - 2 0 463 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 77.0000 0.0000 1.0000 0.0000 0.0000 49.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39768473/39768474(+)->chr21:39768936/39768937(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39838727 + 0 2 chr21 39863701 - 2 0 24974 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 56.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39838727/39838728(+)->chr21:39863701/39863702(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39849621 + 0 2 chr21 39850505 - 2 0 884 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 52.0000 0.0000 1.0000 0.0000 0.0000 74.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39849621/39849622(+)->chr21:39850505/39850506(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39858845 + 0 2 chr21 39859592 - 2 0 747 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 41.0000 0.0000 1.0000 0.0000 0.0000 84.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39858845/39858846(+)->chr21:39859592/39859593(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 39863020 + 0 2 chr21 39863629 - 2 0 609 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 101.0000 0.0000 1.0000 0.0000 0.0000 25.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39863020/39863021(+)->chr21:39863629/39863630(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 39871034 + 0 2 chr21 39877568 - 2 0 6534 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 66.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:39871034/39871035(+)->chr21:39877568/39877569(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42836581 + 0 2 chr21 42839672 - 2 0 3091 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 19.0000 0.0000 1.0000 0.0000 0.0000 107.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42836581/42836582(+)->chr21:42839672/42839673(-):(spanning_paired_1_t:1,spanning_paired_2_t:1) +chr21 42853701 + 0 2 chr21 42860029 - 2 0 6328 entropy=0.0<0.6828,n_support=1<7 circular intronic 3 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 22.0000 0.0000 1.0000 0.0000 0.0000 31.0000 0.0000 1.0000 0.0000 0.0000 0.3333 2.0000 chr21:42853701/42853702(+)->chr21:42860029/42860030(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42866483 - 0 2 chr21 42870116 - 2 0 3633 entropy=0.0<0.6828,n_support=1<7 linear intronic 3 9 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 38.0000 0.0000 1.0000 0.0000 0.0000 88.0000 0.0000 1.0000 0.0000 0.0000 1.5000 2.0000 chr21:42866483/42866484(-)->chr21:42870116/42870117(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 42839824 + 0 4 chr21 42840323 - 4 0 499 n_support=2<7,log_ratio_slope=12.99>1.8,log_ratio_rvalue=9.21>0.4 circular intronic 2 2 0 2 1 1 1 0 0 1.0000 1.0000 0.0000 0.4056 44.0000 82.0000 1.0000 0.0000 0.0000 0.0000 120.0000 0.0000 1.0000 0.0000 40.0000 0.5000 2.0000 chr21:42839824/42839825(+)->chr21:42840323/42840324(-):(discordant_mates:4) +chr21 39770910 + 2 0 chr21 39771416 - 0 2 506 entropy=0.0<0.6827,n_support=1<7 circular intronic 2 2 1 0 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 75.0000 0.0000 1.0000 0.0000 0.0000 48.0000 0.0000 1.0000 0.0000 0.0000 0.5000 2.0000 chr21:39770910/39770911(+)->chr21:39771416/39771417(-):(spanning_singleton_1_r:1,spanning_singleton_2_r:1) +chr21 39860702 - 4 0 chr21 42843890 + 0 4 2983188 entropy=0.0<0.6827,n_support=2<7 linear intronic 2 0 0 2 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 40.0000 0.0000 2.0000 chr21:39860702/39860703(-)->chr21:42843890/42843891(+):(discordant_mates:4) +chr21 39781087 + 0 2 chr21 39782101 - 2 0 1014 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39781087/39781088(+)->chr21:39782101/39782102(-):(discordant_mates:2) +chr21 39846131 + 0 2 chr21 39846834 - 2 0 703 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 39.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39846131/39846132(+)->chr21:39846834/39846835(-):(discordant_mates:2) +chr21 39853321 - 2 0 chr21 42851610 + 0 2 2998289 entropy=0.0<0.6826,n_support=1<7 linear intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:39853321/39853322(-)->chr21:42851610/42851611(+):(discordant_mates:2) +chr21 42840341 + 0 2 chr21 42842586 - 2 0 2245 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 0.0000 124.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42840341/42840342(+)->chr21:42842586/42842587(-):(discordant_mates:2) +chr21 42843861 + 2 0 chr21 42845272 - 0 2 1411 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 65.0000 0.0000 1.0000 0.0000 0.0000 60.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42843861/42843862(+)->chr21:42845272/42845273(-):(discordant_mates:2) +chr21 42863757 + 0 2 chr21 42864220 - 2 0 463 entropy=0.0<0.6826,n_support=1<7 circular intronic 1 0 0 1 1 1 1 0 0 0.0000 0.0000 0.0000 0.0000 0.0000 126.0000 0.0000 1.0000 0.0000 0.0000 123.0000 0.0000 1.0000 0.0000 20.0000 0.0000 2.0000 chr21:42863757/42863758(+)->chr21:42864220/42864221(-):(discordant_mates:2)
--- a/test-data/detect.txt Fri Apr 28 03:56:08 2017 -0400 +++ b/test-data/detect.txt Thu Aug 10 05:38:27 2017 -0400 @@ -1,2 +1,2 @@ -chr-A pos-A direction-A chr-B pos-B direction-B genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps data-structure -chr21 39877811 - chr21 42873374 + 2995563 n_discordant_reads=0<1,n_support=3<8 linear intronic 9 6 3 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(spanning_paired_1_t:3,spanning_paired_2_t:3) +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-B-acceptor pos-B-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 39877811 - 6 0 chr21 42873374 + 0 6 2995563 unclassified linear intronic 9 6 3 0 1 1 1 0 0 1.0000 1.0000 0.0000 0.0000 17.0000 37.3333 0.9994 0.0216 0.5774 24.0000 42.3333 0.9954 0.0611 2.3094 0.0000 0.3333 2.0000 chr21:39877811/39877812(-)->chr21:42873374/42873375(+):(spanning_paired_1_t:3,spanning_paired_2_t:3)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/integrate_test_terg_s041.in.dbed Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,6 @@ +chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge data-structure +chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) +chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) +chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) +chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) +chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/integrate_test_terg_s041.out.no-gtf.txt Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,6 @@ +shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge frameshift=0 frameshift=+1 frameshift=+2 data-structure +1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) +1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) +2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) +3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) +4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/integrate_test_terg_s041.out.txt Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,6 @@ +shared-id fusion chr-A pos-A direction-A pos-A-acceptor pos-A-donor chr-B pos-B direction-B pos-A-acceptor pos-A-donor genomic-distance filter-status circRNA intronic/exonic score soft+hardclips n-split-reads n-discordant-reads n-edges n-nodes-A n-nodes-B n-splice-junc-A n-splice-junc-B entropy-bp-edge entropy-all-edges bp-pos-stddev entropy-disco-bps lr-A-slope lr-A-intercept lr-A-rvalue lr-A-pvalue lr-A-stderr lr-B-slope lr-B-intercept lr-B-rvalue lr-B-pvalue lr-B-stderr disco/split clips/score nodes/edge frameshift=0 frameshift=+1 frameshift=+2 data-structure +1 TMPRSS2->ERG chr21 38487350 - 200 0 chr21 41479719 + 0 200 2992369 valid linear intronic 151 96 48 7 1 1 1 0 0 0.869 0.869 0.2887 0.8124 2.1465 5.6435 0.9817 0 0.0571 1.9162 26.2818 0.99 0 0.0376 0.1458 0.3179 2 chr21:38487350/38487351(-)->chr21:41479719/41479720(+):(discordant_mates:14,spanning_paired_1:41,spanning_paired_1_t:7,spanning_paired_2:41,spanning_paired_2_t:7) +1 TMPRSS2->ERG chr21 38445621 - 200 0 chr21 41498118 + 0 200 3052497 valid linear exonic 588 378 189 21 14 7 9 2 4 0.7421 0.8197 0 0.7162 0.7344 19.9882 0.9657 0 0.0178 0.7194 21.976 0.9648 0 0.0177 0.1111 0.3214 1.1429 TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000332149.9)-ensembl_havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000398585.7)-ensembl->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000424093.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000454499.5)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000455813.1)-havana->ERG(ENST00000442448.5)-ensembl,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000288319.11)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398905.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398907.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398910.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398911.5)-havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000398919.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000417133.6)-ensembl_havana,TMPRSS2(ENST00000458356.5)-havana->ERG(ENST00000442448.5)-ensembl chr21:38445621/38445622(-)->chr21:41498118/41498119(+):(discordant_mates:14,spanning_paired_1:114,spanning_paired_1_t:4,spanning_paired_2:114,spanning_paired_2_t:4)&chr21:38445621/38445622(-)->chr21:41508080/41508081(+):(spanning_paired_1:33,spanning_paired_2:33)&chr21:38445621/38445622(-)->chr21:41507949/41507950(+):(discordant_mates:8,spanning_paired_1:15,spanning_paired_2:15)&chr21:38474121/38474122(-)->chr21:41498118/41498119(+):(spanning_paired_1:14,spanning_paired_2:14)&chr21:38445621/38445622(-)->chr21:41480475/41480476(+):(discordant_mates:6,spanning_paired_1:2,spanning_paired_2:2)&chr21:38423561/38423562(-)->chr21:41498118/41498119(+):(spanning_paired_1:2,spanning_paired_2:2)&chr21:38445621/38445622(-)->chr21:41506444/41506445(+):(discordant_mates:6,spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:38445621/38445622(-)->chr21:41504366/41504367(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38446208/38446209(-)->chr21:41498118/41498119(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41480475/41480476(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38474121/38474122(-)->chr21:41508080/41508081(+):(spanning_paired_1:1,spanning_paired_2:1)&chr21:38423567/38423568(-)->chr21:41485824/41485825(+):(discordant_mates:4)&chr21:38445482/38445483(-)->chr21:41500346/41500347(+):(discordant_mates:2)&chr21:38474093/38474094(-)->chr21:41507966/41507967(+):(discordant_mates:2) +2 chr21:36338771->chr21:36344707 chr21 36338771 + 0 10 chr21 36344707 - 10 0 5936 valid circular exonic 117 58 38 3 2 2 2 0 0 0.8536 0.8591 2.436 0.871 2.1714 19.1829 0.9605 0 0.1021 2.0941 32.6902 0.9725 0 0.0814 0.0789 0.2479 2 chr21:36338771/36338772(+)->chr21:36344707/36344708(-):(discordant_mates:6,spanning_paired_1:14,spanning_paired_1_t:23,spanning_paired_2:14,spanning_paired_2_t:23)&chr21:36338841/36338842(+)->chr21:36341534/36341535(-):(spanning_paired_1:1,spanning_paired_2:1) +3 chr21:29329693->chr21:29321220 chr21 29321220 + 10 0 chr21 29329693 - 0 10 8473 valid circular exonic 49 35 15 4 4 4 3 0 0 0.8605 0.8018 0 0.6667 8.3531 34.3077 0.9863 0 0.4412 9.4685 14.5897 0.9701 0 0.749 0.2667 0.3571 1.75 chr21:29321220/29321221(+)->chr21:29329693/29329694(-):(discordant_mates:4,spanning_paired_1:9,spanning_paired_1_t:1,spanning_paired_2:9,spanning_paired_2_t:1)&chr21:29326058/29326059(+)->chr21:29329693/29329694(-):(spanning_paired_1:4,spanning_paired_2:4)&chr21:29327324/29327325(+)->chr21:29329704/29329705(-):(spanning_paired_1_t:1,spanning_paired_2_t:1)&chr21:29321216/29321217(+)->chr21:29329647/29329648(-):(discordant_mates:4) +4 chr21:33432871<->chr21:33414887 chr21 33414887 + 5 5 chr21 33432871 - 5 5 17984 valid circular exonic 20 12 6 2 3 3 2 1 0 0.8277 0.9167 0 0.75 12.6 50.8 0.7995 0.1045 5.4663 12.8 24.2 0.8072 0.0987 5.4049 0.3333 0.3 1.6667 chr21:33414887/33414888(+)->chr21:33432871/33432872(-):(spanning_paired_1:2,spanning_paired_1_t:3,spanning_paired_2:2,spanning_paired_2_t:3)&chr21:33426883/33426884(+)->chr21:33432871/33432872(-):(spanning_paired_1:1,spanning_paired_2:1)&chr21:33414915/33414916(+)->chr21:33421509/33421510(-):(discordant_mates:4)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/integrate_tmprss-erg.hg38.gtf Thu Aug 10 05:38:27 2017 -0400 @@ -0,0 +1,159 @@ +chr21 ensembl_havana gene 38380027 38661780 . - . gene_id "ENSG00000157554"; gene_version "18"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +chr21 havana CDS 38498363 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38445404 38445621 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38423410 38423561 . - 1 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "3"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38403506 38403709 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38402557 38402637 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38392376 38392444 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38391659 38391715 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38390995 38391042 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38383406 38383923 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398905"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-203"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS82674"; protein_id "ENSP00000381877"; protein_version "1"; tag "basic"; transcript_support_level "1"; +chr21 havana CDS 38498363 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana CDS 38445404 38445621 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana CDS 38423410 38423561 . - 1 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "3"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana CDS 38403506 38403709 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana CDS 38402557 38402637 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana CDS 38400574 38400645 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana CDS 38391659 38391715 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana CDS 38390995 38391042 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 havana CDS 38383406 38383923 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398907"; transcript_version "5"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000381879"; protein_version "1"; tag "basic"; transcript_support_level "5"; +chr21 ensembl_havana CDS 38498363 38498380 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "1"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38445404 38445621 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "2"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38423410 38423561 . - 1 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "3"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38403506 38403709 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "4"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38402557 38402637 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "5"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38400574 38400645 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "6"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38392376 38392444 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "7"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38391659 38391715 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "8"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38390995 38391042 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "9"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38383406 38383923 . - 2 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000288319"; transcript_version "11"; exon_number "10"; gene_name "ERG"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "ERG-201"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13658"; protein_id "ENSP00000288319"; protein_version "7"; tag "basic"; transcript_support_level "1"; +chr21 ensembl_havana CDS 38423410 38423521 . - 0 gene_id "ENSG00000157554"; gene_version "18"; transcript_id "ENST00000398897"; 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+chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41466145 41466153 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000458356"; transcript_version "5"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-206"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33564"; protein_id "ENSP00000391216"; protein_version "1"; tag "basic"; transcript_support_level "2"; +chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "9"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "10"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "11"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "12"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "13"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000454499"; transcript_version "5"; exon_number "14"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000389006"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "1"; +chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "4"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "5"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "6"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "7"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41473446 41473496 . - 2 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000424093"; transcript_version "5"; exon_number "8"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-203"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000397846"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "5"; +chr21 havana CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "2"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000391784"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2"; +chr21 havana CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012"; gene_version "11"; transcript_id "ENST00000455813"; transcript_version "1"; exon_number "3"; gene_name "TMPRSS2"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "TMPRSS2-205"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000391784"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "2";